Literature DB >> 22285423

Understanding genetic variation and function- the applications of next generation sequencing.

Richard J Harrison1.   

Abstract

Next generation sequencing (NGS) technology has had a transformatory effect upon population-level studies linking genetic variation to gene function. In this review, I briefly describe recent studies that have used top-down genome scanning and population genetic approaches to identify loci under recent selection, as well as some examples of how large NGS datasets can be deployed to detect the total level of deleterious, neutral and advantageous variation present in standing genetic variation. I then explore studies that have used some of these approaches to study gene function along with advances in sequencing populations under selection, QTL mapping techniques and emerging methodologies utilising targeted capture and NGS.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22285423     DOI: 10.1016/j.semcdb.2012.01.006

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  6 in total

Review 1.  Alu elements: at the crossroads between disease and evolution.

Authors:  Jernej Ule
Journal:  Biochem Soc Trans       Date:  2013-12       Impact factor: 5.407

2.  Association of FAAH p.Pro129Thr and COMT p.Ala72Ser with schizophrenia and comorbid substance use through next-generation sequencing: an exploratory analysis.

Authors:  José J Martínez-Magaña; Alma D Genis-Mendoza; Vanessa González-Covarrubias; Isela E Juárez-Rojop; Carlos A Tovilla-Zárate; Xavier Soberón; Nuria Lanzagorta; Humberto Nicolini
Journal:  Braz J Psychiatry       Date:  2022 Mar-Abr

3.  PopGenome: an efficient Swiss army knife for population genomic analyses in R.

Authors:  Bastian Pfeifer; Ulrich Wittelsbürger; Sebastian E Ramos-Onsins; Martin J Lercher
Journal:  Mol Biol Evol       Date:  2014-04-16       Impact factor: 16.240

4.  Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing.

Authors:  Xin Ma; Yongcai Fu; Xinhui Zhao; Liyun Jiang; Zuofeng Zhu; Ping Gu; Wenying Xu; Zhen Su; Chuanqing Sun; Lubin Tan
Journal:  Sci Rep       Date:  2016-06-02       Impact factor: 4.379

5.  Genome characterization of the selected long- and short-sleep mouse lines.

Authors:  Robin Dowell; Aaron Odell; Phillip Richmond; Daniel Malmer; Eitan Halper-Stromberg; Beth Bennett; Colin Larson; Sonia Leach; Richard A Radcliffe
Journal:  Mamm Genome       Date:  2016-09-20       Impact factor: 2.957

6.  Influence of Temperature on the Bacterial Community in Substrate and Extracellular Enzyme Activity of Auricularia cornea.

Authors:  Xiaoping Zhang; Bo Zhang; Renyun Miao; Jie Zhou; Lei Ye; Dinghong Jia; Weihong Peng; Lijuan Yan; Xiaoping Zhang; Wei Tan; Xiaolin Li
Journal:  Mycobiology       Date:  2018-08-13       Impact factor: 1.858

  6 in total

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