Literature DB >> 22284350

How chemoproteomics can enable drug discovery and development.

Raymond E Moellering1, Benjamin F Cravatt.   

Abstract

Creating first-in-class medications to treat human disease is an extremely challenging endeavor. While genome sequencing and genetics are making direct connections between mutations and human disorders at an unprecedented rate, matching molecular targets with a suitable therapeutic indication must ultimately be achieved by pharmacology. Here, we discuss how the integration of chemical proteomic platforms (such as activity-based protein profiling) into the earliest stages of the drug discovery process has the potential to greatly expand the scope of proteins that can be pharmacologically evaluated in living systems, and, through doing so, promote the identification and prioritization of new therapeutic targets.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22284350      PMCID: PMC3312051          DOI: 10.1016/j.chembiol.2012.01.001

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  95 in total

1.  Activity-based protein profiling: the serine hydrolases.

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

2.  Affinity-based proteomics reveal cancer-specific networks coordinated by Hsp90.

Authors:  Kamalika Moulick; James H Ahn; Hongliang Zong; Anna Rodina; Leandro Cerchietti; Erica M Gomes DaGama; Eloisi Caldas-Lopes; Kristin Beebe; Fabiana Perna; Katerina Hatzi; Ly P Vu; Xinyang Zhao; Danuta Zatorska; Tony Taldone; Peter Smith-Jones; Mary Alpaugh; Steven S Gross; Nagavarakishore Pillarsetty; Thomas Ku; Jason S Lewis; Steven M Larson; Ross Levine; Hediye Erdjument-Bromage; Monica L Guzman; Stephen D Nimer; Ari Melnick; Len Neckers; Gabriela Chiosis
Journal:  Nat Chem Biol       Date:  2011-09-25       Impact factor: 15.040

3.  Target discovery in small-molecule cell-based screens by in situ proteome reactivity profiling.

Authors:  Michael J Evans; Alan Saghatelian; Erik J Sorensen; Benjamin F Cravatt
Journal:  Nat Biotechnol       Date:  2005-10-02       Impact factor: 54.908

4.  Identifying the proteins to which small-molecule probes and drugs bind in cells.

Authors:  Shao-En Ong; Monica Schenone; Adam A Margolin; Xiaoyu Li; Kathy Do; Mary K Doud; D R Mani; Letian Kuai; Xiang Wang; John L Wood; Nicola J Tolliday; Angela N Koehler; Lisa A Marcaurelle; Todd R Golub; Robert J Gould; Stuart L Schreiber; Steven A Carr
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-02       Impact factor: 11.205

5.  Too many roads not taken.

Authors:  Aled M Edwards; Ruth Isserlin; Gary D Bader; Stephen V Frye; Timothy M Willson; Frank H Yu
Journal:  Nature       Date:  2011-02-10       Impact factor: 49.962

6.  Discovery of PF-04457845: A Highly Potent, Orally Bioavailable, and Selective Urea FAAH Inhibitor.

Authors:  Douglas S Johnson; Cory Stiff; Scott E Lazerwith; Suzanne R Kesten; Lorraine K Fay; Mark Morris; David Beidler; Marya B Liimatta; Sarah E Smith; David T Dudley; Nalini Sadagopan; Shobha N Bhattachar; Stephen J Kesten; Tyzoon K Nomanbhoy; Benjamin F Cravatt; Kay Ahn
Journal:  ACS Med Chem Lett       Date:  2011-02-10       Impact factor: 4.345

7.  Evidence for an alternative glycolytic pathway in rapidly proliferating cells.

Authors:  Matthew G Vander Heiden; Jason W Locasale; Kenneth D Swanson; Hadar Sharfi; Greg J Heffron; Daniel Amador-Noguez; Heather R Christofk; Gerhard Wagner; Joshua D Rabinowitz; John M Asara; Lewis C Cantley
Journal:  Science       Date:  2010-09-17       Impact factor: 47.728

8.  A small molecule inhibitor of beta-catenin/CREB-binding protein transcription [corrected].

Authors:  Katayoon H Emami; Cu Nguyen; Hong Ma; Dae Hoon Kim; Kwang Won Jeong; Masakatsu Eguchi; Randall T Moon; Jia-Ling Teo; Se Woong Oh; Hak Yeop Kim; Sung Hwan Moon; Jong Ryul Ha; Michael Kahn
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

9.  Characterization of a selective inhibitor of the Parkinson's disease kinase LRRK2.

Authors:  Xianming Deng; Nicolas Dzamko; Alan Prescott; Paul Davies; Qingsong Liu; Qingkai Yang; Jiing-Dwan Lee; Matthew P Patricelli; Tyzoon K Nomanbhoy; Dario R Alessi; Nathanael S Gray
Journal:  Nat Chem Biol       Date:  2011-03-06       Impact factor: 15.040

Review 10.  Targeting the cancer kinome through polypharmacology.

Authors:  Zachary A Knight; Henry Lin; Kevan M Shokat
Journal:  Nat Rev Cancer       Date:  2010-02       Impact factor: 60.716

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  48 in total

Review 1.  Targeting protein kinases with selective and semipromiscuous covalent inhibitors.

Authors:  Rand M Miller; Jack Taunton
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  Multidimensional profiling platforms reveal metabolic dysregulation caused by organophosphorus pesticides.

Authors:  Daniel Medina-Cleghorn; Ann Heslin; Patrick J Morris; Melinda M Mulvihill; Daniel K Nomura
Journal:  ACS Chem Biol       Date:  2013-11-20       Impact factor: 5.100

Review 3.  Chemical approaches to study metabolic networks.

Authors:  Daniel Medina-Cleghorn; Daniel K Nomura
Journal:  Pflugers Arch       Date:  2013-01-08       Impact factor: 3.657

Review 4.  Exploring metabolic pathways and regulation through functional chemoproteomic and metabolomic platforms.

Authors:  Daniel Medina-Cleghorn; Daniel K Nomura
Journal:  Chem Biol       Date:  2014-09-18

5.  Isotopically Labeled Clickable Glutathione to Quantify Protein S-Glutathionylation.

Authors:  Garrett C VanHecke; Maheeshi Yapa Abeywardana; Bo Huang; Young-Hoon Ahn
Journal:  Chembiochem       Date:  2019-10-29       Impact factor: 3.164

6.  Detection of endogenous matrix metalloprotease-12 active form with a novel broad spectrum activity-based probe.

Authors:  Catherine Nury; Sarah Bregant; Bertrand Czarny; Fannely Berthon; Evelyne Cassar-Lajeunesse; Vincent Dive
Journal:  J Biol Chem       Date:  2012-12-27       Impact factor: 5.157

7.  Fluorescence linked enzyme chemoproteomic strategy for discovery of a potent and selective DAPK1 and ZIPK inhibitor.

Authors:  David A Carlson; Aaron S Franke; Douglas H Weitzel; Brittany L Speer; Philip F Hughes; Laura Hagerty; Christopher N Fortner; James M Veal; Thomas E Barta; Bartosz J Zieba; Avril V Somlyo; Cindy Sutherland; Jing Ti Deng; Michael P Walsh; Justin A MacDonald; Timothy A J Haystead
Journal:  ACS Chem Biol       Date:  2013-10-17       Impact factor: 5.100

8.  cat-ELCCA: catalyzing drug discovery through click chemistry.

Authors:  Amanda L Garner
Journal:  Chem Commun (Camb)       Date:  2018-06-19       Impact factor: 6.222

Review 9.  Activity-based protein profiling for mapping and pharmacologically interrogating proteome-wide ligandable hotspots.

Authors:  Allison M Roberts; Carl C Ward; Daniel K Nomura
Journal:  Curr Opin Biotechnol       Date:  2016-08-26       Impact factor: 9.740

10.  Proteome-wide reactivity profiling identifies diverse carbamate chemotypes tuned for serine hydrolase inhibition.

Authors:  Jae Won Chang; Armand B Cognetta; Micah J Niphakis; Benjamin F Cravatt
Journal:  ACS Chem Biol       Date:  2013-05-23       Impact factor: 5.100

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