Literature DB >> 22280840

Towards understanding how molecular networks evolve in plants.

Lee Chae1, Insuk Lee, Junha Shin, Seung Yon Rhee.   

Abstract

Residing beneath the phenotypic landscape of a plant are intricate and dynamic networks of genes and proteins. As evolution operates on phenotypes, we expect its forces to shape somehow these underlying molecular networks. In this review, we discuss progress being made to elucidate the nature of these forces and their impact on the composition and structure of molecular networks. We also outline current limitations and open questions facing the broader field of plant network analysis.
Copyright © 2012 Elsevier Ltd. All rights reserved.

Mesh：

Year:  2012        PMID： 22280840     DOI： 10.1016/j.pbi.2012.01.006

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN： 1369-5266            Impact factor:   7.834


  28 in total

1.  Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms.

Authors:  Zhen Li; Jonas Defoort; Setareh Tasdighian; Steven Maere; Yves Van de Peer; Riet De Smet
Journal:  Plant Cell       Date:  2016-01-07       Impact factor: 11.277

2.  In silico enzymatic synthesis of a 400,000 compound biochemical database for nontargeted metabolomics.

Authors:  Lochana C Menikarachchi; Dennis W Hill; Mai A Hamdalla; Ion I Mandoiu; David F Grant
Journal:  J Chem Inf Model       Date:  2013-09-12       Impact factor: 4.956

3.  Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses.

Authors:  Pankaj Barah; Mahantesha Naika B N; Naresh Doni Jayavelu; Ramanathan Sowdhamini; Khader Shameer; Atle M Bones
Journal:  Nucleic Acids Res       Date:  2015-12-17       Impact factor: 16.971

4.  Cladodes, leaf-like organs in Asparagus, show the significance of co-option of pre-existing genetic regulatory circuit for morphological diversity of plants.

Authors:  Hokuto Nakayama; Takahiro Yamaguchi; Hirokazu Tsukaya
Journal:  Plant Signal Behav       Date:  2012-07-27

5.  MiRNAting control of DNA methylation.

Authors:  Ashwani Jha; Ravi Shankar
Journal:  J Biosci       Date:  2014-06       Impact factor: 1.826

6.  Analysis of bHLH coding genes using gene co-expression network approach.

Authors:  Swati Srivastava; Garima Singh; Noopur Singh; Gaurava Srivastava; Ashok Sharma
Journal:  Mol Biol Rep       Date:  2016-05-13       Impact factor: 2.316

7.  Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones.

Authors:  Mami Yamazaki; Keiichi Mochida; Takashi Asano; Ryo Nakabayashi; Motoaki Chiba; Nirin Udomson; Yasuyo Yamazaki; Dayan B Goodenowe; Ushio Sankawa; Takuhiro Yoshida; Atsushi Toyoda; Yasushi Totoki; Yoshiyuki Sakaki; Elsa Góngora-Castillo; C Robin Buell; Tetsuya Sakurai; Kazuki Saito
Journal:  Plant Cell Physiol       Date:  2013-03-15       Impact factor: 4.927

8.  Network Modeling Unravels Mechanisms of Crosstalk between Ethylene and Salicylate Signaling in Potato.

Authors:  Živa Ramšak; Anna Coll; Tjaša Stare; Oren Tzfadia; Špela Baebler; Yves Van de Peer; Kristina Gruden
Journal:  Plant Physiol       Date:  2018-06-22       Impact factor: 8.340

9.  The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.

Authors:  Petra Stamm; Alexander T Topham; Nur Karimah Mukhtar; Matthew D B Jackson; Daniel F A Tomé; Jim L Beynon; George W Bassel
Journal:  Plant Physiol       Date:  2016-11-21       Impact factor: 8.340

10.  Effect of thermospermine on expression profiling of different gene using massive analysis of cDNA ends (MACE) and vascular maintenance in Arabidopsis.

Authors:  G H M Sagor; Stefan Simm; Dong Wook Kim; Masaru Niitsu; Tomonobu Kusano; Thomas Berberich
Journal:  Physiol Mol Biol Plants       Date:  2021-03-14
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