Literature DB >> 22280839

In silico archeogenomics unveils modern plant genome organisation, regulation and evolution.

Jérôme Salse1.   

Abstract

Increasing access to plant genome sequences as well as high resolution gene-based genetic maps have recently offered the opportunity to compare modern genomes and model their evolutionary history from their reconstructed founder ancestors on an unprecedented scale. In silico paleogenomic data have revealed the evolutionary forces that have shaped present-day genomes and allowed us to gain insight into how they are organised and regulated today.
Copyright © 2012 Elsevier Ltd. All rights reserved.

Mesh：

Year:  2012        PMID： 22280839     DOI： 10.1016/j.pbi.2012.01.001

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN： 1369-5266            Impact factor:   7.834


  31 in total

1.  Grass microRNA gene paleohistory unveils new insights into gene dosage balance in subgenome partitioning after whole-genome duplication.

Authors:  Michael Abrouk; Rongzhi Zhang; Florent Murat; Aili Li; Caroline Pont; Long Mao; Jérôme Salse
Journal:  Plant Cell       Date:  2012-05-15       Impact factor: 11.277

2.  Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes.

Authors:  Steven B Cannon; Michael R McKain; Alex Harkess; Matthew N Nelson; Sudhansu Dash; Michael K Deyholos; Yanhui Peng; Blake Joyce; Charles N Stewart; Megan Rolf; Toni Kutchan; Xuemei Tan; Cui Chen; Yong Zhang; Eric Carpenter; Gane Ka-Shu Wong; Jeff J Doyle; Jim Leebens-Mack
Journal:  Mol Biol Evol       Date:  2014-10-27       Impact factor: 16.240

3.  Genome-wide characterization of phenylalanine ammonia-lyase gene family in watermelon (Citrullus lanatus).

Authors:  Chun-Juan Dong; Qing-Mao Shang
Journal:  Planta       Date:  2013-04-02       Impact factor: 4.116

4.  A genealogy of the citrus family.

Authors:  Riccardo Velasco; Concetta Licciardello
Journal:  Nat Biotechnol       Date:  2014-07       Impact factor: 54.908

Review 5.  Genetic and molecular bases of yield-associated traits: a translational biology approach between rice and wheat.

Authors:  Ravi Valluru; Matthew P Reynolds; Jerome Salse
Journal:  Theor Appl Genet       Date:  2014-06-10       Impact factor: 5.699

6.  The genome of Eucalyptus grandis.

Authors:  Alexander A Myburg; Dario Grattapaglia; Gerald A Tuskan; Uffe Hellsten; Richard D Hayes; Jane Grimwood; Jerry Jenkins; Erika Lindquist; Hope Tice; Diane Bauer; David M Goodstein; Inna Dubchak; Alexandre Poliakov; Eshchar Mizrachi; Anand R K Kullan; Steven G Hussey; Desre Pinard; Karen van der Merwe; Pooja Singh; Ida van Jaarsveld; Orzenil B Silva-Junior; Roberto C Togawa; Marilia R Pappas; Danielle A Faria; Carolina P Sansaloni; Cesar D Petroli; Xiaohan Yang; Priya Ranjan; Timothy J Tschaplinski; Chu-Yu Ye; Ting Li; Lieven Sterck; Kevin Vanneste; Florent Murat; Marçal Soler; Hélène San Clemente; Naijib Saidi; Hua Cassan-Wang; Christophe Dunand; Charles A Hefer; Erich Bornberg-Bauer; Anna R Kersting; Kelly Vining; Vindhya Amarasinghe; Martin Ranik; Sushma Naithani; Justin Elser; Alexander E Boyd; Aaron Liston; Joseph W Spatafora; Palitha Dharmwardhana; Rajani Raja; Christopher Sullivan; Elisson Romanel; Marcio Alves-Ferreira; Carsten Külheim; William Foley; Victor Carocha; Jorge Paiva; David Kudrna; Sergio H Brommonschenkel; Giancarlo Pasquali; Margaret Byrne; Philippe Rigault; Josquin Tibbits; Antanas Spokevicius; Rebecca C Jones; Dorothy A Steane; René E Vaillancourt; Brad M Potts; Fourie Joubert; Kerrie Barry; Georgios J Pappas; Steven H Strauss; Pankaj Jaiswal; Jacqueline Grima-Pettenati; Jérôme Salse; Yves Van de Peer; Daniel S Rokhsar; Jeremy Schmutz
Journal:  Nature       Date:  2014-06-11       Impact factor: 49.962

7.  The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions.

Authors:  Shaogui Guo; Jianguo Zhang; Honghe Sun; Jerome Salse; William J Lucas; Haiying Zhang; Yi Zheng; Linyong Mao; Yi Ren; Zhiwen Wang; Jiumeng Min; Xiaosen Guo; Florent Murat; Byung-Kook Ham; Zhaoliang Zhang; Shan Gao; Mingyun Huang; Yimin Xu; Silin Zhong; Aureliano Bombarely; Lukas A Mueller; Hong Zhao; Hongju He; Yan Zhang; Zhonghua Zhang; Sanwen Huang; Tao Tan; Erli Pang; Kui Lin; Qun Hu; Hanhui Kuang; Peixiang Ni; Bo Wang; Jingan Liu; Qinghe Kou; Wenju Hou; Xiaohua Zou; Jiao Jiang; Guoyi Gong; Kathrin Klee; Heiko Schoof; Ying Huang; Xuesong Hu; Shanshan Dong; Dequan Liang; Juan Wang; Kui Wu; Yang Xia; Xiang Zhao; Zequn Zheng; Miao Xing; Xinming Liang; Bangqing Huang; Tian Lv; Junyi Wang; Ye Yin; Hongping Yi; Ruiqiang Li; Mingzhu Wu; Amnon Levi; Xingping Zhang; James J Giovannoni; Jun Wang; Yunfu Li; Zhangjun Fei; Yong Xu
Journal:  Nat Genet       Date:  2012-11-25       Impact factor: 38.330

8.  Comparative mapping in the Fagaceae and beyond with EST-SSRs.

Authors:  Catherine Bodénès; Emilie Chancerel; Oliver Gailing; Giovanni G Vendramin; Francesca Bagnoli; Jerome Durand; Pablo G Goicoechea; Carolina Soliani; Fiorella Villani; Claudia Mattioni; Hans Peter Koelewijn; Florent Murat; Jerome Salse; Guy Roussel; Christophe Boury; Florian Alberto; Antoine Kremer; Christophe Plomion
Journal:  BMC Plant Biol       Date:  2012-08-29       Impact factor: 4.215

9.  Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes.

Authors:  Florent Murat; Yves Van de Peer; Jérôme Salse
Journal:  Genome Biol Evol       Date:  2012-07-24       Impact factor: 3.416

10.  Chromosome fragile sites in Arabidopsis harbor matrix attachment regions that may be associated with ancestral chromosome rearrangement events.

Authors:  Joelle S dela Paz; Patti E Stronghill; Scott J Douglas; Sandy Saravia; Clare A Hasenkampf; C Daniel Riggs
Journal:  PLoS Genet       Date:  2012-12-20       Impact factor: 5.917
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.