Literature DB >> 22279044

A zipcode unzipped.

Michael Doyle1, Michael A Kiebler.   

Abstract

RNA-binding proteins (RBPs) exert many roles in the post-transcriptional regulation of gene expression in eukaryotic cells. However, our understanding of how they recognize their target RNAs in vivo remains limited. In the January 1, 2012, issue of Genes & Development, Patel and colleagues (p. 43-53) provide detailed mechanistic insights into how one of the best-studied RBPs, zipcode-binding protein 1 (ZBP1), recognizes a bipartite RNA sequence element within the β-actin mRNA.

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Year:  2012        PMID: 22279044      PMCID: PMC3273834          DOI: 10.1101/gad.184945.111

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  22 in total

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Authors:  Jon R Lorsch
Journal:  Cell       Date:  2002-06-28       Impact factor: 41.582

2.  Multi-domain conformational selection underlies pre-mRNA splicing regulation by U2AF.

Authors:  Cameron D Mackereth; Tobias Madl; Sophie Bonnal; Bernd Simon; Katia Zanier; Alexander Gasch; Vladimir Rybin; Juan Valcárcel; Michael Sattler
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

Review 3.  Mechanisms of dendritic mRNA transport and its role in synaptic tagging.

Authors:  Michael Doyle; Michael A Kiebler
Journal:  EMBO J       Date:  2011-08-31       Impact factor: 11.598

4.  Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control.

Authors:  Vivek L Patel; Somdeb Mitra; Richard Harris; Adina R Buxbaum; Timothée Lionnet; Michael Brenowitz; Mark Girvin; Matthew Levy; Steven C Almo; Robert H Singer; Jeffrey A Chao
Journal:  Genes Dev       Date:  2012-01-01       Impact factor: 11.361

5.  ZBP1 recognition of beta-actin zipcode induces RNA looping.

Authors:  Jeffrey A Chao; Yury Patskovsky; Vivek Patel; Matthew Levy; Steven C Almo; Robert H Singer
Journal:  Genes Dev       Date:  2010-01-15       Impact factor: 11.361

6.  Evidence for auto-inhibition by the N terminus of hADAR2 and activation by dsRNA binding.

Authors:  Mark R Macbeth; Arunth T Lingam; Brenda L Bass
Journal:  RNA       Date:  2004-10       Impact factor: 4.942

7.  Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.

Authors:  Markus Hafner; Markus Landthaler; Lukas Burger; Mohsen Khorshid; Jean Hausser; Philipp Berninger; Andrea Rothballer; Manuel Ascano; Anna-Carina Jungkamp; Mathias Munschauer; Alexander Ulrich; Greg S Wardle; Scott Dewell; Mihaela Zavolan; Thomas Tuschl
Journal:  Cell       Date:  2010-04-02       Impact factor: 41.582

8.  A cytoplasmic complex mediates specific mRNA recognition and localization in yeast.

Authors:  Marisa Müller; Roland Gerhard Heym; Andreas Mayer; Katharina Kramer; Maria Schmid; Patrick Cramer; Henning Urlaub; Ralf-Peter Jansen; Dierk Niessing
Journal:  PLoS Biol       Date:  2011-04-19       Impact factor: 8.029

9.  Distinct in vivo roles for double-stranded RNA-binding domains of the Xenopus RNA-editing enzyme ADAR1 in chromosomal targeting.

Authors:  Michael Doyle; Michael F Jantsch
Journal:  J Cell Biol       Date:  2003-04-28       Impact factor: 10.539

10.  Two ZBP1 KH domains facilitate beta-actin mRNA localization, granule formation, and cytoskeletal attachment.

Authors:  Kim L Farina; Stefan Huttelmaier; Kiran Musunuru; Robert Darnell; Robert H Singer
Journal:  J Cell Biol       Date:  2002-12-30       Impact factor: 10.539

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  7 in total

1.  Isolation and Characterization of Endogenous RNPs from Brain Tissues.

Authors:  Rico Schieweck; Foong Yee Ang; Renate Fritzsche; Michael A Kiebler
Journal:  Methods Mol Biol       Date:  2018

2.  Molecular determinants of cytochrome C oxidase IV mRNA axonal trafficking.

Authors:  Amar N Kar; Jose Norberto S Vargas; Cai-Yun Chen; Jeffrey A Kowalak; Anthony E Gioio; Barry B Kaplan
Journal:  Mol Cell Neurosci       Date:  2017-02-01       Impact factor: 4.314

3.  A HuD-ZBP1 ribonucleoprotein complex localizes GAP-43 mRNA into axons through its 3' untranslated region AU-rich regulatory element.

Authors:  Soonmoon Yoo; Hak H Kim; Paul Kim; Christopher J Donnelly; Ashley L Kalinski; Deepika Vuppalanchi; Michael Park; Seung J Lee; Tanuja T Merianda; Nora I Perrone-Bizzozero; Jeffery L Twiss
Journal:  J Neurochem       Date:  2013-04-30       Impact factor: 5.372

Review 4.  RNA-binding proteins, neural development and the addictions.

Authors:  C D Bryant; N Yazdani
Journal:  Genes Brain Behav       Date:  2016-01       Impact factor: 3.449

5.  Actin and myosin-dependent localization of mRNA to dendrites.

Authors:  Varuzhan Balasanyan; Don B Arnold
Journal:  PLoS One       Date:  2014-03-17       Impact factor: 3.240

Review 6.  Regulation of mRNA transport, localization and translation in the nervous system of mammals (Review).

Authors:  Carlo Maria Di Liegro; Gabriella Schiera; Italia Di Liegro
Journal:  Int J Mol Med       Date:  2014-01-21       Impact factor: 4.101

7.  mLoc-mRNA: predicting multiple sub-cellular localization of mRNAs using random forest algorithm coupled with feature selection via elastic net.

Authors:  Prabina Kumar Meher; Anil Rai; Atmakuri Ramakrishna Rao
Journal:  BMC Bioinformatics       Date:  2021-06-24       Impact factor: 3.169

  7 in total

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