Literature DB >> 22275104

Genome sequence of benzo(a)pyrene-degrading bacterium Novosphingobium pentaromativorans US6-1.

Yuan Rong Luo1, Sung Gyun Kang, Sang-Jin Kim, Mi-Ree Kim, Nan Li, Jung-Hyun Lee, Kae Kyoung Kwon.   

Abstract

Novosphingobium pentaromativorans US6-1 showed a good ability to degrade high-molecular-weight polycyclic aromatic hydrocarbons. We report the draft genome sequence of strain US6-1, which contains a main chromosome (5,096,413 bp, G+C content of 63.1%) and two plasmids (188,476 and 60,085 bp). The majority of the aromatic-hydrocarbon-degrading genes are encoded in the larger plasmid.

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Year:  2012        PMID： 22275104      PMCID： PMC3272951          DOI： 10.1128/JB.06476-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

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2.  Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199.

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Journal:  J Bacteriol       Date:  1999-03       Impact factor: 3.490

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5.  Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment.

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  8 in total
  13 in total

1.  Proteomic characterization of the outer membrane vesicle of the halophilic marine bacterium Novosphingobium pentaromativorans US6-1.

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2.  Identifying bioaugmentation candidates for bioremediation of polycyclic aromatic hydrocarbons in contaminated estuarine sediment of the Elizabeth River, VA, USA.

Authors:  Savannah J Volkoff; Daniel L Rodriguez; David R Singleton; Alexander W McCumber; Michael D Aitken; Jill R Stewart; Claudia K Gunsch
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3.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

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4.  Insights into Ongoing Evolution of the Hexachlorocyclohexane Catabolic Pathway from Comparative Genomics of Ten Sphingomonadaceae Strains.

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5.  Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation.

Authors:  Han Ming Gan; André O Hudson; Ahmad Yamin Abdul Rahman; Kok Gan Chan; Michael A Savka
Journal:  BMC Genomics       Date:  2013-06-28       Impact factor: 3.969

6.  Proteomic characterization of plasmid pLA1 for biodegradation of polycyclic aromatic hydrocarbons in the marine bacterium, Novosphingobium pentaromativorans US6-1.

Authors:  Sung Ho Yun; Chi-Won Choi; Sang-Yeop Lee; Yeol Gyun Lee; Joseph Kwon; Sun Hee Leem; Young Ho Chung; Hyung-Yeel Kahng; Sang Jin Kim; Kae Kyoung Kwon; Seung Il Kim
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Review 7.  Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy.

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8.  Biodegradation of polycyclic aromatic hydrocarbons by Novosphingobium pentaromativorans US6-1.

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Journal:  PLoS One       Date:  2014-07-09       Impact factor: 3.240

9.  Complete genome sequence of Novosphingobium pentaromativorans US6-1(T).

Authors:  Dong Hee Choi; Yong Min Kwon; Kae Kyoung Kwon; Sang-Jin Kim
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10.  Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin β-Aryl Ether Cleavage Pathway from Sphingobium sp. SYK-6.

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Journal:  J Biol Chem       Date:  2016-03-03       Impact factor: 5.157
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