Literature DB >> 22275059

Structural thermal adaptation of β-tubulins from the Antarctic psychrophilic protozoan Euplotes focardii.

Federica Chiappori1, Sandra Pucciarelli, Ivan Merelli, Patrizia Ballarini, Cristina Miceli, Luciano Milanesi.   

Abstract

Tubulin dimers of psychrophilic eukaryotes can polymerize into microtubules at 4°C, a temperature at which microtubules from mesophiles disassemble. This unique capability requires changes in the primary structure and/or in post-translational modifications of the tubulin subunits. To contribute to the understanding of mechanisms responsible for microtubule cold stability, here we present a computational structural analysis based on molecular dynamics (MD) and experimental data of three β-tubulin isotypes, named EFBT2, EFBT3, and EFBT4, from the Antarctic protozoon Euplotes focardii that optimal temperature for growth and reproduction is 4°C. In comparison to the β-tubulin from E. crassus, a mesophilic Euplotes species, EFBT2, EFBT3, and EFBT4 possess unique amino acid substitutions that confer different flexible properties of the polypeptide, as well as an increased hydrophobicity of the regions involved in microtubule interdimeric contacts that may overcome the microtubule destabilizing effect of cold temperatures. The structural analysis based on MD indicated that all isotypes display different flexibility properties in the regions involved in the formation of longitudinal and lateral contacts during microtubule polymerization. We also investigated the role of E. focardii β-tubulin isotypes during the process of cilia formation. The unique characteristics of the primary and tertiary structures of psychrophilic β-tubulin isotypes seem responsible for the formation of microtubules with distinct dynamic and functional properties.
Copyright © 2011 Wiley Periodicals, Inc.

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Year:  2012        PMID: 22275059     DOI: 10.1002/prot.24016

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  7 in total

1.  Exploring the Cold-Adaptation Mechanism of Serine Hydroxymethyltransferase by Comparative Molecular Dynamics Simulations.

Authors:  Zhi-Bi Zhang; Yuan-Ling Xia; Guang-Heng Dong; Yun-Xin Fu; Shu-Qun Liu
Journal:  Int J Mol Sci       Date:  2021-02-11       Impact factor: 5.923

2.  Microbial Consortium Associated with the Antarctic Marine Ciliate Euplotes focardii: An Investigation from Genomic Sequences.

Authors:  Sandra Pucciarelli; Raghul Rajan Devaraj; Alessio Mancini; Patrizia Ballarini; Michele Castelli; Martina Schrallhammer; Giulio Petroni; Cristina Miceli
Journal:  Microb Ecol       Date:  2015-02-24       Impact factor: 4.552

3.  Rational Engineering of a Cold-Adapted α-Amylase from the Antarctic Ciliate Euplotes focardii for Simultaneous Improvement of Thermostability and Catalytic Activity.

Authors:  Guang Yang; Hua Yao; Matteo Mozzicafreddo; Patrizia Ballarini; Sandra Pucciarelli; Cristina Miceli
Journal:  Appl Environ Microbiol       Date:  2017-06-16       Impact factor: 4.792

4.  Horizontal gene transfer and silver nanoparticles production in a new Marinomonas strain isolated from the Antarctic psychrophilic ciliate Euplotes focardii.

Authors:  Maria Sindhura John; Joseph Amruthraj Nagoth; Kesava Priyan Ramasamy; Patrizia Ballarini; Matteo Mozzicafreddo; Alessio Mancini; Andrea Telatin; Pietro Liò; Gabriele Giuli; Antonino Natalello; Cristina Miceli; Sandra Pucciarelli
Journal:  Sci Rep       Date:  2020-06-23       Impact factor: 4.379

5.  An In-Silico Comparative Study of Lipases from the Antarctic Psychrophilic Ciliate Euplotes focardii and the Mesophilic Congeneric Species Euplotes crassus: Insight into Molecular Cold-Adaptation.

Authors:  Guang Yang; Matteo Mozzicafreddo; Patrizia Ballarini; Sandra Pucciarelli; Cristina Miceli
Journal:  Mar Drugs       Date:  2021-01-27       Impact factor: 5.118

6.  The macronuclear genome of the Antarctic psychrophilic marine ciliate Euplotes focardii reveals new insights on molecular cold adaptation.

Authors:  Matteo Mozzicafreddo; Sandra Pucciarelli; Estienne C Swart; Angela Piersanti; Christiane Emmerich; Giovanna Migliorelli; Patrizia Ballarini; Cristina Miceli
Journal:  Sci Rep       Date:  2021-09-21       Impact factor: 4.379

7.  Distinct functional roles of β-tubulin isotypes in microtubule arrays of Tetrahymena thermophila, a model single-celled organism.

Authors:  Sandra Pucciarelli; Patrizia Ballarini; Daniela Sparvoli; Sabrina Barchetta; Ting Yu; H William Detrich; Cristina Miceli
Journal:  PLoS One       Date:  2012-06-22       Impact factor: 3.240

  7 in total

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