Literature DB >> 22265378

Conformational analysis of cellobiose by electronic structure theories.

Alfred D French1, Glenn P Johnson, Christopher J Cramer, Gábor I Csonka.   

Abstract

Adiabatic Φ/ψ maps for cellobiose were prepared with B3LYP density functional theory. A mixed basis set was used for minimization, followed with 6-31+G(d) single-point calculations, with and without SMD continuum solvation. Different arrangements of the exocyclic groups (38 starting geometries) were considered for each Φ/ψ point. The vacuum calculations agreed with earlier computational and experimental results on the preferred gas phase conformation (anti-Φ(H), syn-ψ(H)), and the results from the solvated calculations were consistent with the (syn Φ(H)/ψ(H) conformations from condensed phases (crystals or solutions). Results from related studies were compared, and there is substantial dependence on the solvation model as well as arrangements of exocyclic groups. New stabilizing interactions were revealed by Atoms-In-Molecules theory. Published by Elsevier Ltd.

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Year:  2012        PMID: 22265378     DOI: 10.1016/j.carres.2011.12.023

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  4 in total

1.  Importance of ligand conformational energies in carbohydrate docking: Sorting the wheat from the chaff.

Authors:  Anita K Nivedha; Spandana Makeneni; Bethany Lachele Foley; Matthew B Tessier; Robert J Woods
Journal:  J Comput Chem       Date:  2013-12-29       Impact factor: 3.376

2.  Structural evidence for inter-residue hydrogen bonding observed for cellobiose in aqueous solution.

Authors:  William B O'Dell; David C Baker; Sylvia E McLain
Journal:  PLoS One       Date:  2012-10-02       Impact factor: 3.240

Review 3.  Three-Dimensional Structures of Carbohydrates and Where to Find Them.

Authors:  Sofya I Scherbinina; Philip V Toukach
Journal:  Int J Mol Sci       Date:  2020-10-18       Impact factor: 5.923

4.  Detection of Human Neutrophil Elastase by Fluorescent Peptide Sensors Conjugated to TEMPO-Oxidized Nanofibrillated Cellulose.

Authors:  Robert T Mackin; Krystal R Fontenot; Judson Vincent Edwards; Nicolette T Prevost; Jacobs H Jordan; Michael W Easson; Brian D Condon; Alfred D French
Journal:  Int J Mol Sci       Date:  2022-03-13       Impact factor: 5.923

  4 in total

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