| Literature DB >> 22264128 |
Hirak Chakraborty1, Barry R Lentz.
Abstract
Circular dichroism (CD) spectroscopy is an important technique in structural biology for examining folding and conformational changes of proteins in solution. However, the use of CD spectroscopy in a membrane medium (and also in a nonhomogeneous medium) is limited by (i) high light scattering and (ii) differential scattering of incident left and right circularly polarized light, especially at shorter wavelengths (<200 nm). We report a novel methodology for estimating the distortion of CD spectra caused by light scattering for membrane-bound peptides and proteins. The method is applied to three proteins with very different secondary structures to illustrate the limits of its capabilities when calibrated with a simple soluble peptide ([Ac]ANLKALEAQKQKEQRQAAEELANAK[OH], standard peptide) with a balanced secondary structure. The method with this calibration standard was quite successful in estimating α-helix but more limited when it comes to proteins with very high β-sheet or β-turn content.Entities:
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Year: 2012 PMID: 22264128 PMCID: PMC3282530 DOI: 10.1021/bi300025c
Source DB: PubMed Journal: Biochemistry ISSN: 0006-2960 Impact factor: 3.162