Literature DB >> 22264128

A simple method for correction of circular dichroism spectra obtained from membrane-containing samples.

Hirak Chakraborty1, Barry R Lentz.   

Abstract

Circular dichroism (CD) spectroscopy is an important technique in structural biology for examining folding and conformational changes of proteins in solution. However, the use of CD spectroscopy in a membrane medium (and also in a nonhomogeneous medium) is limited by (i) high light scattering and (ii) differential scattering of incident left and right circularly polarized light, especially at shorter wavelengths (<200 nm). We report a novel methodology for estimating the distortion of CD spectra caused by light scattering for membrane-bound peptides and proteins. The method is applied to three proteins with very different secondary structures to illustrate the limits of its capabilities when calibrated with a simple soluble peptide ([Ac]ANLKALEAQKQKEQRQAAEELANAK[OH], standard peptide) with a balanced secondary structure. The method with this calibration standard was quite successful in estimating α-helix but more limited when it comes to proteins with very high β-sheet or β-turn content.

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Year:  2012        PMID: 22264128      PMCID: PMC3282530          DOI: 10.1021/bi300025c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

1.  Analyses of circular dichroism spectra of membrane proteins.

Authors:  B A Wallace; J G Lees; A J W Orry; A Lobley; Robert W Janes
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

2.  DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data.

Authors:  Lee Whitmore; B A Wallace
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

3.  The differential scattering of circularly polarized light by chloroplasts and evaluation of their true circular dichroism.

Authors:  R P Gregory; S Raps
Journal:  Biochem J       Date:  1974-08       Impact factor: 3.857

4.  Experimental differential light-scattering correction to the circular dichroism of bacteriophage T2.

Authors:  B P Dorman; M F Maestre
Journal:  Proc Natl Acad Sci U S A       Date:  1973-01       Impact factor: 11.205

5.  Circular differential scattering can be an important part of the circular dichroism of macromolecules.

Authors:  C Bustamante; I Tinoco; M F Maestre
Journal:  Proc Natl Acad Sci U S A       Date:  1983-06       Impact factor: 11.205

6.  Spontaneous fusion of phosphatidylcholine small unilamellar vesicles in the fluid phase.

Authors:  B R Lentz; T J Carpenter; D R Alford
Journal:  Biochemistry       Date:  1987-08-25       Impact factor: 3.162

Review 7.  Protein secondary structure analyses from circular dichroism spectroscopy: methods and reference databases.

Authors:  Lee Whitmore; B A Wallace
Journal:  Biopolymers       Date:  2008-05       Impact factor: 2.505

  7 in total
  5 in total

1.  The N-terminal domain allosterically regulates cleavage and activation of the epithelial sodium channel.

Authors:  Pradeep Kota; Ginka Buchner; Hirak Chakraborty; Yan L Dang; Hong He; Guilherme J M Garcia; Jan Kubelka; Martina Gentzsch; M Jackson Stutts; Nikolay V Dokholyan
Journal:  J Biol Chem       Date:  2014-06-28       Impact factor: 5.157

2.  Novel Kinetic Intermediates Populated along the Folding Pathway of the Transmembrane β-Barrel OmpA.

Authors:  Emily J Danoff; Karen G Fleming
Journal:  Biochemistry       Date:  2016-12-21       Impact factor: 3.162

3.  Folding of the β-Barrel Membrane Protein OmpA into Nanodiscs.

Authors:  DeeAnn K Asamoto; Guipeun Kang; Judy E Kim
Journal:  Biophys J       Date:  2019-11-28       Impact factor: 4.033

4.  Wild-type and mutant hemagglutinin fusion peptides alter bilayer structure as well as kinetics and activation thermodynamics of stalk and pore formation differently: mechanistic implications.

Authors:  Hirak Chakraborty; Pradip K Tarafdar; David G Klapper; Barry R Lentz
Journal:  Biophys J       Date:  2013-12-03       Impact factor: 4.033

5.  Strong inhibition of peptide amyloid formation by a fatty acid.

Authors:  Jon Pallbo; Ulf Olsson; Emma Sparr
Journal:  Biophys J       Date:  2021-09-01       Impact factor: 3.699

  5 in total

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