Literature DB >> 22260610

Stretching semiflexible polymer chains: evidence for the importance of excluded volume effects from Monte Carlo simulation.

Hsiao-Ping Hsu1, Kurt Binder.   

Abstract

Semiflexible macromolecules in dilute solution under very good solvent conditions are modeled by self-avoiding walks on the simple cubic lattice (d = 3 dimensions) and square lattice (d = 2 dimensions), varying chain stiffness by an energy penalty ε(b) for chain bending. In the absence of excluded volume interactions, the persistence length l(p) of the polymers would then simply be l(p) = l(b)(2d - 2)(-1)q(b) (-1) with q(b) = exp(-ε(b)/k(B)T), the bond length l(b) being the lattice spacing, and k(B)T is the thermal energy. Using Monte Carlo simulations applying the pruned-enriched Rosenbluth method (PERM), both q(b) and the chain length N are varied over a wide range (0.005 ≤ q(b) ≤ 1, N ≤ 50,000), and also a stretching force f is applied to one chain end (fixing the other end at the origin). In the absence of this force, in d = 2 a single crossover from rod-like behavior (for contour lengths less than l(p)) to swollen coils occurs, invalidating the Kratky-Porod model, while in d = 3 a double crossover occurs, from rods to Gaussian coils (as implied by the Kratky-Porod model) and then to coils that are swollen due to the excluded volume interaction. If the stretching force is applied, excluded volume interactions matter for the force versus extension relation irrespective of chain stiffness in d = 2, while theories based on the Kratky-Porod model are found to work in d = 3 for stiff chains in an intermediate regime of chain extensions. While for q(b) ≪ 1 in this model a persistence length can be estimated from the initial decay of bond-orientational correlations, it is argued that this is not possible for more complex wormlike chains (e.g., bottle-brush polymers). Consequences for the proper interpretation of experiments are briefly discussed.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22260610     DOI: 10.1063/1.3674303

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Force spectroscopy of complex biopolymers with heterogeneous elasticity.

Authors:  David Valdman; Benjamin J Lopez; Megan T Valentine; Paul J Atzberger
Journal:  Soft Matter       Date:  2013-01-21       Impact factor: 3.679

2.  Is DNA a Good Model Polymer?

Authors:  Douglas R Tree; Abhiram Muralidhar; Patrick S Doyle; Kevin D Dorfman
Journal:  Macromolecules       Date:  2013-10-22       Impact factor: 5.985

3.  Knot formation of dsDNA pushed inside a nanochannel.

Authors:  Jan Rothörl; Sarah Wettermann; Peter Virnau; Aniket Bhattacharya
Journal:  Sci Rep       Date:  2022-03-29       Impact factor: 4.996

4.  Generating Chromosome Geometries in a Minimal Cell From Cryo-Electron Tomograms and Chromosome Conformation Capture Maps.

Authors:  Benjamin R Gilbert; Zane R Thornburg; Vinson Lam; Fatema-Zahra M Rashid; John I Glass; Elizabeth Villa; Remus T Dame; Zaida Luthey-Schulten
Journal:  Front Mol Biosci       Date:  2021-07-22
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.