Literature DB >> 22259582

3-Benzyl-sulfanyl-1H-1,2,4-triazol-5-amine.

Shuai Zhang1, Pei-Jiang Liu, Dong-Sheng Ma, Guang-Feng Hou.   

Abstract

In the title mol-ecule, C(9)H(10)N(4)S, the dihedral angle between the benzene and triazole rings is 81.05 (5)°. In the crystal, N-H⋯N hydrogen bonds link the mol-ecules into infinite zigzag chains along [010].

Entities:  

Year:  2011        PMID: 22259582      PMCID: PMC3254435          DOI: 10.1107/S1600536811052159

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of 1,2,4-triazoles derivatives, see: Paulvannan et al. (2001 ▶); El-Sagheer & Brown (2011 ▶).

Experimental

Crystal data

C9H10N4S M = 206.27 Monoclinic, a = 9.870 (2) Å b = 9.6370 (19) Å c = 10.398 (2) Å β = 90.18 (3)° V = 989.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 293 K 0.38 × 0.26 × 0.11 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.897, T max = 0.970 9367 measured reflections 2267 independent reflections 1372 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.111 S = 1.04 2267 reflections 136 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.25 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811052159/cv5211sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052159/cv5211Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811052159/cv5211Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10N4SF(000) = 432
Mr = 206.27Dx = 1.385 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6282 reflections
a = 9.870 (2) Åθ = 3.5–27.5°
b = 9.6370 (19) ŵ = 0.29 mm1
c = 10.398 (2) ÅT = 293 K
β = 90.18 (3)°Block, colorless
V = 989.0 (3) Å30.38 × 0.26 × 0.11 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer2267 independent reflections
Radiation source: fine-focus sealed tube1372 reflections with I > 2σ(I)
graphiteRint = 0.059
ω scanθmax = 27.5°, θmin = 3.5°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −12→12
Tmin = 0.897, Tmax = 0.970k = −12→12
9367 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0455P)2 + 0.1013P] where P = (Fo2 + 2Fc2)/3
2267 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.26 e Å3
3 restraintsΔρmin = −0.25 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.9298 (2)0.2955 (2)0.45864 (19)0.0424 (5)
C21.0473 (2)0.2171 (2)0.4593 (2)0.0510 (6)
H21.05360.14020.51310.061*
C31.1549 (3)0.2511 (3)0.3816 (2)0.0598 (7)
H31.23290.19690.38230.072*
C41.1468 (3)0.3657 (3)0.3029 (2)0.0606 (7)
H41.21980.38960.25100.073*
C51.0312 (3)0.4446 (3)0.3008 (2)0.0564 (6)
H51.02560.52140.24690.068*
C60.9232 (2)0.4102 (2)0.3784 (2)0.0501 (6)
H60.84530.46440.37690.060*
C70.8148 (2)0.2577 (3)0.5473 (2)0.0541 (6)
H7A0.75100.33410.54950.065*
H7B0.85060.24560.63350.065*
C80.6212 (2)0.1615 (2)0.3776 (2)0.0442 (5)
C90.4869 (2)0.1511 (2)0.2191 (2)0.0462 (6)
N10.5965 (2)0.29303 (18)0.3524 (2)0.0541 (5)
N20.5088 (2)0.28358 (17)0.2498 (2)0.0539 (5)
H210.473 (3)0.3613 (18)0.216 (2)0.081*
N30.55663 (18)0.06938 (16)0.29881 (19)0.0460 (5)
N40.4055 (2)0.1079 (2)0.1236 (2)0.0665 (6)
H410.404 (3)0.0173 (12)0.107 (3)0.100*
H420.368 (3)0.167 (3)0.068 (2)0.100*
S10.72492 (7)0.10082 (6)0.50093 (7)0.0582 (2)
U11U22U33U12U13U23
C10.0478 (13)0.0408 (11)0.0385 (11)−0.0047 (9)−0.0002 (10)−0.0064 (10)
C20.0548 (15)0.0433 (13)0.0548 (14)0.0000 (10)−0.0025 (12)0.0058 (11)
C30.0481 (15)0.0580 (15)0.0735 (16)0.0027 (12)0.0074 (13)0.0032 (13)
C40.0516 (16)0.0676 (17)0.0625 (15)−0.0123 (13)0.0078 (12)0.0057 (14)
C50.0657 (18)0.0511 (14)0.0522 (14)−0.0083 (12)−0.0014 (13)0.0119 (12)
C60.0508 (14)0.0453 (12)0.0543 (13)0.0016 (10)−0.0055 (11)0.0007 (11)
C70.0587 (16)0.0511 (13)0.0525 (13)−0.0024 (11)0.0059 (12)−0.0027 (11)
C80.0382 (12)0.0273 (10)0.0672 (14)0.0003 (9)0.0137 (11)0.0022 (10)
C90.0393 (12)0.0266 (10)0.0728 (15)−0.0016 (9)0.0111 (11)0.0016 (11)
N10.0525 (13)0.0264 (9)0.0834 (14)0.0016 (8)−0.0020 (11)−0.0027 (9)
N20.0495 (12)0.0245 (9)0.0876 (15)0.0002 (8)−0.0015 (11)0.0035 (9)
N30.0400 (10)0.0226 (8)0.0753 (13)−0.0012 (7)0.0092 (9)0.0002 (9)
N40.0709 (16)0.0374 (11)0.0912 (17)−0.0030 (10)−0.0166 (13)0.0004 (12)
S10.0576 (4)0.0398 (3)0.0774 (5)−0.0023 (3)0.0053 (3)0.0130 (3)
C1—C21.384 (3)C7—H7A0.9700
C1—C61.386 (3)C7—H7B0.9700
C1—C71.509 (3)C8—N11.317 (3)
C2—C31.377 (3)C8—N31.365 (3)
C2—H20.9300C8—S11.740 (2)
C3—C41.376 (3)C9—N31.333 (3)
C3—H30.9300C9—N21.334 (3)
C4—C51.371 (4)C9—N41.342 (3)
C4—H40.9300N1—N21.375 (3)
C5—C61.380 (3)N2—H210.900 (10)
C5—H50.9300N4—H420.892 (10)
C6—H60.9300N4—H410.889 (10)
C7—S11.817 (2)N4—H420.892 (10)
C2—C1—C6118.5 (2)C1—C7—H7B108.8
C2—C1—C7119.8 (2)S1—C7—H7B108.8
C6—C1—C7121.7 (2)H7A—C7—H7B107.6
C3—C2—C1121.0 (2)N1—C8—N3114.9 (2)
C3—C2—H2119.5N1—C8—S1125.35 (18)
C1—C2—H2119.5N3—C8—S1119.75 (15)
C4—C3—C2119.8 (2)N3—C9—N2109.5 (2)
C4—C3—H3120.1N3—C9—N4125.7 (2)
C2—C3—H3120.1N2—C9—N4124.8 (2)
C5—C4—C3120.0 (2)C8—N1—N2101.91 (18)
C5—C4—H4120.0C9—N2—N1110.48 (19)
C3—C4—H4120.0C9—N2—H21129.8 (18)
C4—C5—C6120.1 (2)N1—N2—H21119.7 (17)
C4—C5—H5119.9C9—N3—C8103.18 (17)
C6—C5—H5119.9H42—N4—C9122 (2)
C5—C6—C1120.6 (2)H42—N4—H41120 (3)
C5—C6—H6119.7C9—N4—H41117 (2)
C1—C6—H6119.7H42—N4—H420(2)
C1—C7—S1113.99 (16)C9—N4—H42122 (2)
C1—C7—H7A108.8H41—N4—H42120 (3)
S1—C7—H7A108.8C8—S1—C7101.62 (11)
D—H···AD—HH···AD···AD—H···A
N4—H41···N1i0.89 (1)2.20 (2)3.044 (3)158 (3)
N2—H21···N3ii0.90 (1)2.03 (2)2.873 (2)155 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H41⋯N1i0.89 (1)2.20 (2)3.044 (3)158 (3)
N2—H21⋯N3ii0.90 (1)2.03 (2)2.873 (2)155 (2)

Symmetry codes: (i) ; (ii) .

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1.  Efficient RNA synthesis by in vitro transcription of a triazole-modified DNA template.

Authors:  Afaf H el-Sagheer; Tom Brown
Journal:  Chem Commun (Camb)       Date:  2011-09-30       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  Synthesis of 3-(5-amino-1H-1,2,4-triazol-3-yl)propanamides and their tautomerism.

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