Literature DB >> 22259569

Dihydro-allocryptopine.

Wenwen Sun1, Yuyan Qin, Zhe Hou, Yao Yao, Le Zhou.   

Abstract

IN THE TITLE COMPOUND [SYSTEMATIC NAME: 7,8-dimeth-oxy-11-methyl-17,19-dioxa-11-aza-tetra-cyclo-[12.7.0.0(4,9).0(16,20)]henicosa-1(21),4,6,8,14,16 (20)-hexaen-2-ol], C(21)H(25)NO(5), the benzene rings are inclined at a dihedral angle of 23.16 (5)°. One of the meth-oxy C atoms is close to coplanar with its attached ring [deviation = 0.129 (3) Å], whereas the other is orientated away from the ring [deviation = -1.124 (2) Å]. The 10-membered ring is highly puckered, and the OH and CH(3) substituents project to the same side of the ring. In the crystal, O-H⋯O hydrogen bonds link the mol-ecules into [010] chains and C-H⋯O and C-H⋯π inter-actions consolidate the packing.

Entities:  

Year:  2011        PMID: 22259569      PMCID: PMC3254424          DOI: 10.1107/S1600536811052172

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Wada et al. (2007 ▶). For the biological activity of allocryptopine derivatives, see: Morteza et al. (2003 ▶); Yan et al. (2009 ▶); Capasso et al. (1997 ▶); Jeong et al. (2009 ▶); Zhao et al. (2008 ▶). For a related structure, see: Valpuesta et al. (2006 ▶).

Experimental

Crystal data

C21H25NO5 M = 371.42 Monoclinic, a = 14.2557 (19) Å b = 9.3705 (13) Å c = 15.278 (2) Å β = 106.601 (2)° V = 1955.8 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.45 × 0.24 × 0.21 mm

Data collection

Bruker SMART APEX II CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.961, T max = 0.981 14189 measured reflections 3646 independent reflections 2766 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.110 S = 1.02 3646 reflections 248 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811052172/hb6507sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052172/hb6507Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811052172/hb6507Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H25NO5F(000) = 792
Mr = 371.42Dx = 1.261 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 14.2557 (19) ÅCell parameters from 3665 reflections
b = 9.3705 (13) Åθ = 2.6–22.6°
c = 15.278 (2) ŵ = 0.09 mm1
β = 106.601 (2)°T = 296 K
V = 1955.8 (5) Å3Block, colourless
Z = 40.45 × 0.24 × 0.21 mm
Bruker SMART APEX II CCD diffractometer3646 independent reflections
Radiation source: fine-focus sealed tube2766 reflections with I > 2σ(I)
graphiteRint = 0.026
phi and ω scansθmax = 25.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −17→17
Tmin = 0.961, Tmax = 0.981k = −11→11
14189 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0526P)2 + 0.4075P] where P = (Fo2 + 2Fc2)/3
3646 reflections(Δ/σ)max = 0.001
248 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.27622 (11)0.13752 (17)0.24521 (10)0.0402 (4)
C20.32459 (11)0.17612 (18)0.18061 (11)0.0460 (4)
H20.29540.16120.11860.055*
C30.41532 (12)0.2359 (2)0.21064 (13)0.0528 (4)
C40.46009 (13)0.2568 (2)0.30202 (14)0.0592 (5)
C50.41615 (12)0.2188 (2)0.36684 (13)0.0588 (5)
H50.44780.23290.42850.071*
C60.32187 (11)0.15767 (19)0.33900 (11)0.0464 (4)
C70.55723 (15)0.3447 (3)0.22467 (16)0.0776 (6)
H7A0.61860.31060.21680.093*
H7B0.55390.44710.21510.093*
C80.17251 (11)0.08232 (16)0.20842 (9)0.0375 (3)
H80.15450.02800.25600.045*
C90.10207 (11)0.20855 (17)0.17812 (11)0.0410 (4)
H9A0.12340.28500.22210.049*
H9B0.10790.24290.12000.049*
C10−0.00464 (11)0.17974 (16)0.16778 (10)0.0381 (3)
C11−0.04578 (11)0.20517 (16)0.23982 (10)0.0381 (3)
C120.01951 (11)0.25595 (18)0.33146 (11)0.0444 (4)
H12A0.04770.34790.32430.053*
H12B−0.01890.26700.37420.053*
C130.19042 (11)0.2073 (2)0.42234 (11)0.0507 (4)
H13A0.19020.20990.48570.061*
H13B0.19880.30420.40350.061*
C140.27663 (12)0.1155 (2)0.41377 (11)0.0530 (5)
H14A0.32740.11830.47170.064*
H14B0.25440.01740.40340.064*
C150.06335 (14)0.0326 (2)0.40923 (13)0.0650 (5)
H15A0.1137−0.03880.42550.098*
H15B0.0059−0.00730.36720.098*
H15C0.04780.06460.46310.098*
C16−0.14540 (11)0.18373 (17)0.22552 (10)0.0410 (4)
C17−0.20575 (11)0.13956 (18)0.14017 (11)0.0452 (4)
C18−0.16472 (12)0.11260 (18)0.07058 (11)0.0463 (4)
H18−0.20360.08090.01420.056*
C19−0.06541 (12)0.13279 (17)0.08482 (10)0.0430 (4)
H19−0.03850.11430.03720.052*
C20−0.22408 (15)0.0958 (2)0.33403 (14)0.0674 (5)
H20A−0.26900.04190.28680.101*
H20B−0.25690.12930.37690.101*
H20C−0.17000.03610.36500.101*
C21−0.36808 (14)0.0889 (3)0.04815 (15)0.0854 (7)
H21A−0.36460.15870.00320.128*
H21B−0.43370.08460.05290.128*
H21C−0.3498−0.00280.03030.128*
N10.09746 (9)0.15187 (14)0.36674 (8)0.0403 (3)
O10.55278 (10)0.3128 (2)0.31403 (11)0.0870 (5)
O20.47711 (10)0.27719 (17)0.16005 (10)0.0764 (4)
O30.16204 (8)−0.00602 (12)0.12969 (7)0.0458 (3)
H30.1735−0.08920.14580.069*
O4−0.30345 (8)0.12764 (16)0.13363 (8)0.0642 (4)
O5−0.18857 (8)0.21548 (12)0.29420 (7)0.0497 (3)
U11U22U33U12U13U23
C10.0378 (8)0.0418 (9)0.0418 (9)0.0010 (7)0.0127 (7)−0.0015 (7)
C20.0419 (9)0.0530 (10)0.0431 (9)0.0002 (7)0.0121 (7)0.0017 (7)
C30.0446 (10)0.0587 (11)0.0594 (11)−0.0037 (8)0.0216 (8)0.0003 (9)
C40.0407 (9)0.0668 (12)0.0694 (12)−0.0113 (9)0.0147 (9)−0.0111 (10)
C50.0432 (10)0.0793 (14)0.0511 (10)−0.0077 (9)0.0089 (8)−0.0145 (9)
C60.0395 (9)0.0553 (10)0.0428 (9)0.0013 (7)0.0091 (7)−0.0051 (8)
C70.0530 (12)0.0853 (16)0.0995 (17)−0.0185 (11)0.0298 (12)−0.0081 (13)
C80.0417 (8)0.0422 (9)0.0301 (7)−0.0026 (7)0.0125 (6)−0.0025 (6)
C90.0429 (9)0.0425 (9)0.0389 (8)−0.0011 (7)0.0140 (7)0.0029 (7)
C100.0408 (8)0.0357 (8)0.0375 (8)0.0027 (6)0.0111 (6)0.0027 (6)
C110.0407 (8)0.0346 (8)0.0381 (8)0.0007 (6)0.0095 (7)−0.0015 (6)
C120.0430 (9)0.0473 (9)0.0436 (9)−0.0029 (7)0.0136 (7)−0.0117 (7)
C130.0456 (9)0.0690 (12)0.0369 (8)−0.0084 (8)0.0108 (7)−0.0137 (8)
C140.0440 (9)0.0768 (13)0.0347 (8)−0.0011 (9)0.0057 (7)−0.0011 (8)
C150.0613 (11)0.0714 (13)0.0612 (12)−0.0116 (10)0.0156 (9)0.0148 (10)
C160.0408 (8)0.0424 (9)0.0413 (9)0.0025 (7)0.0142 (7)−0.0021 (7)
C170.0376 (9)0.0493 (10)0.0456 (9)0.0016 (7)0.0069 (7)−0.0019 (7)
C180.0458 (9)0.0531 (10)0.0350 (8)0.0012 (8)0.0036 (7)−0.0040 (7)
C190.0478 (9)0.0462 (9)0.0357 (8)0.0048 (7)0.0130 (7)0.0005 (7)
C200.0694 (13)0.0749 (14)0.0672 (12)−0.0005 (11)0.0347 (10)0.0095 (10)
C210.0436 (11)0.128 (2)0.0719 (14)−0.0027 (12)−0.0039 (10)−0.0165 (14)
N10.0398 (7)0.0478 (8)0.0326 (6)−0.0057 (6)0.0095 (5)−0.0040 (6)
O10.0522 (8)0.1244 (14)0.0852 (11)−0.0369 (9)0.0208 (7)−0.0178 (10)
O20.0563 (8)0.1040 (12)0.0760 (9)−0.0229 (8)0.0303 (7)0.0018 (8)
O30.0541 (7)0.0482 (7)0.0363 (6)−0.0031 (6)0.0150 (5)−0.0074 (5)
O40.0363 (6)0.0958 (10)0.0561 (7)−0.0040 (6)0.0062 (5)−0.0098 (7)
O50.0496 (7)0.0551 (7)0.0499 (7)−0.0007 (5)0.0229 (5)−0.0060 (5)
C1—C21.403 (2)C12—H12B0.9700
C1—C61.407 (2)C13—N11.4506 (19)
C1—C81.515 (2)C13—C141.536 (2)
C2—C31.363 (2)C13—H13A0.9700
C2—H20.9300C13—H13B0.9700
C3—C41.373 (3)C14—H14A0.9700
C3—O21.383 (2)C14—H14B0.9700
C4—C51.362 (3)C15—N11.445 (2)
C4—O11.384 (2)C15—H15A0.9600
C5—C61.410 (2)C15—H15B0.9600
C5—H50.9300C15—H15C0.9600
C6—C141.516 (2)C16—O51.3920 (18)
C7—O11.417 (3)C16—C171.404 (2)
C7—O21.427 (2)C17—O41.3720 (19)
C7—H7A0.9700C17—C181.375 (2)
C7—H7B0.9700C18—C191.383 (2)
C8—O31.4323 (17)C18—H180.9300
C8—C91.535 (2)C19—H190.9300
C8—H80.9800C20—O51.435 (2)
C9—C101.508 (2)C20—H20A0.9600
C9—H9A0.9700C20—H20B0.9600
C9—H9B0.9700C20—H20C0.9600
C10—C191.387 (2)C21—O41.414 (2)
C10—C111.407 (2)C21—H21A0.9600
C11—C161.388 (2)C21—H21B0.9600
C11—C121.519 (2)C21—H21C0.9600
C12—N11.461 (2)O3—H30.8200
C12—H12A0.9700
C2—C1—C6120.30 (14)N1—C13—H13A109.3
C2—C1—C8116.79 (13)C14—C13—H13A109.3
C6—C1—C8122.82 (13)N1—C13—H13B109.3
C3—C2—C1118.61 (15)C14—C13—H13B109.3
C3—C2—H2120.7H13A—C13—H13B108.0
C1—C2—H2120.7C6—C14—C13116.17 (15)
C2—C3—C4121.44 (16)C6—C14—H14A108.2
C2—C3—O2128.43 (17)C13—C14—H14A108.2
C4—C3—O2110.06 (15)C6—C14—H14B108.2
C5—C4—C3121.68 (16)C13—C14—H14B108.2
C5—C4—O1128.52 (18)H14A—C14—H14B107.4
C3—C4—O1109.74 (17)N1—C15—H15A109.5
C4—C5—C6118.93 (16)N1—C15—H15B109.5
C4—C5—H5120.5H15A—C15—H15B109.5
C6—C5—H5120.5N1—C15—H15C109.5
C1—C6—C5119.03 (15)H15A—C15—H15C109.5
C1—C6—C14124.04 (14)H15B—C15—H15C109.5
C5—C6—C14116.92 (14)C11—C16—O5120.21 (13)
O1—C7—O2109.03 (15)C11—C16—C17121.11 (14)
O1—C7—H7A109.9O5—C16—C17118.53 (13)
O2—C7—H7A109.9O4—C17—C18125.15 (14)
O1—C7—H7B109.9O4—C17—C16115.57 (14)
O2—C7—H7B109.9C18—C17—C16119.28 (14)
H7A—C7—H7B108.3C17—C18—C19119.72 (14)
O3—C8—C1111.43 (12)C17—C18—H18120.1
O3—C8—C9106.85 (12)C19—C18—H18120.1
C1—C8—C9109.50 (13)C18—C19—C10122.10 (14)
O3—C8—H8109.7C18—C19—H19118.9
C1—C8—H8109.7C10—C19—H19118.9
C9—C8—H8109.7O5—C20—H20A109.5
C10—C9—C8116.55 (13)O5—C20—H20B109.5
C10—C9—H9A108.2H20A—C20—H20B109.5
C8—C9—H9A108.2O5—C20—H20C109.5
C10—C9—H9B108.2H20A—C20—H20C109.5
C8—C9—H9B108.2H20B—C20—H20C109.5
H9A—C9—H9B107.3O4—C21—H21A109.5
C19—C10—C11118.51 (14)O4—C21—H21B109.5
C19—C10—C9120.04 (13)H21A—C21—H21B109.5
C11—C10—C9121.40 (13)O4—C21—H21C109.5
C16—C11—C10119.24 (13)H21A—C21—H21C109.5
C16—C11—C12121.34 (13)H21B—C21—H21C109.5
C10—C11—C12119.42 (13)C15—N1—C13112.48 (14)
N1—C12—C11109.40 (12)C15—N1—C12111.35 (14)
N1—C12—H12A109.8C13—N1—C12116.64 (13)
C11—C12—H12A109.8C4—O1—C7104.83 (15)
N1—C12—H12B109.8C3—O2—C7104.43 (15)
C11—C12—H12B109.8C8—O3—H3109.5
H12A—C12—H12B108.2C17—O4—C21117.92 (14)
N1—C13—C14111.64 (14)C16—O5—C20115.97 (13)
C6—C1—C2—C3−1.3 (2)C1—C6—C14—C13−71.7 (2)
C8—C1—C2—C3175.33 (15)C5—C6—C14—C13109.25 (18)
C1—C2—C3—C40.9 (3)N1—C13—C14—C690.26 (18)
C1—C2—C3—O2177.59 (17)C10—C11—C16—O5−176.56 (13)
C2—C3—C4—C50.1 (3)C12—C11—C16—O53.2 (2)
O2—C3—C4—C5−177.16 (18)C10—C11—C16—C17−1.1 (2)
C2—C3—C4—O1177.33 (17)C12—C11—C16—C17178.70 (15)
O2—C3—C4—O10.1 (2)C11—C16—C17—O4−177.48 (14)
C3—C4—C5—C6−0.6 (3)O5—C16—C17—O4−1.9 (2)
O1—C4—C5—C6−177.3 (2)C11—C16—C17—C182.2 (2)
C2—C1—C6—C50.8 (3)O5—C16—C17—C18177.73 (14)
C8—C1—C6—C5−175.64 (15)O4—C17—C18—C19177.98 (16)
C2—C1—C6—C14−178.21 (16)C16—C17—C18—C19−1.7 (2)
C8—C1—C6—C145.3 (3)C17—C18—C19—C100.1 (3)
C4—C5—C6—C10.2 (3)C11—C10—C19—C181.0 (2)
C4—C5—C6—C14179.25 (17)C9—C10—C19—C18−176.33 (15)
C2—C1—C8—O338.31 (19)C14—C13—N1—C1579.54 (18)
C6—C1—C8—O3−145.11 (15)C14—C13—N1—C12−150.04 (14)
C2—C1—C8—C9−79.68 (17)C11—C12—N1—C15−80.48 (17)
C6—C1—C8—C996.90 (17)C11—C12—N1—C13148.58 (13)
O3—C8—C9—C1077.80 (16)C5—C4—O1—C7−174.7 (2)
C1—C8—C9—C10−161.39 (13)C3—C4—O1—C78.3 (2)
C8—C9—C10—C19−89.37 (18)O2—C7—O1—C4−13.5 (2)
C8—C9—C10—C1193.35 (17)C2—C3—O2—C7174.7 (2)
C19—C10—C11—C16−0.5 (2)C4—C3—O2—C7−8.3 (2)
C9—C10—C11—C16176.82 (14)O1—C7—O2—C313.6 (2)
C19—C10—C11—C12179.70 (14)C18—C17—O4—C21−2.1 (3)
C9—C10—C11—C12−3.0 (2)C16—C17—O4—C21177.58 (18)
C16—C11—C12—N1121.81 (15)C11—C16—O5—C20−112.30 (17)
C10—C11—C12—N1−58.39 (19)C17—C16—O5—C2072.12 (19)
Cg2 is the centroid of the C1–C6 benzene ring.
D—H···AD—HH···AD···AD—H···A
O3—H3···O5i0.822.032.8380 (16)168
C7—H7A···O4ii0.972.573.405 (3)144
C18—H18···O3iii0.932.533.229 (2)132
C7—H7B···Cg2iv0.972.573.464 (3)153
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C1–C6 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O5i0.822.032.8380 (16)168
C7—H7A⋯O4ii0.972.573.405 (3)144
C18—H18⋯O3iii0.932.533.229 (2)132
C7—H7BCg2iv0.972.573.464 (3)153

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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6.  Dopamine transporter inhibitory and antiparkinsonian effect of common flowering quince extract.

Authors:  Gang Zhao; Zhi-Hua Jiang; Xiang-Wei Zheng; Shao-Yun Zang; Li-He Guo
Journal:  Pharmacol Biochem Behav       Date:  2008-03-30       Impact factor: 3.533

7.  On the synthesis of protopine alkaloids.

Authors:  Yasuhiro Wada; Harumi Kaga; Shiho Uchiito; Eri Kumazawa; Miho Tomiki; Yu Onozaki; Nobuhito Kurono; Masao Tokuda; Takeshi Ohkuma; Kazuhiko Orito
Journal:  J Org Chem       Date:  2007-08-17       Impact factor: 4.354

  7 in total

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