| Literature DB >> 22259537 |
Iván Brito, Jorge Bórquez, Mario Simirgiotis, Alejandro Cárdenas, Matías López-Rodríguez.
Abstract
The title compound, C(16)H(14)O(5)·2H(2)O [systematic name: 5-hy-droxy-2-(4-hy-droxy-phen-yl)-7-meth-oxy-chroman-4-one dihydrate], is a natural phytoalexin flavone isolated from the native chilean species Heliotropium taltalense and crystallizes with an organic mol-ecule and two water mol-ecules in the asymmetric unit. The 5-hy-droxy group forms a strong intra-molecular hydrogen bond with the carbonyl group, resulting in a six-membered ring. In the crystal, the components are linked by O-H⋯O hydrogen bonds, forming a three-dimensional network. The 4-hy-droxy-phenyl benzene ring is bonded equatorially to the pyrone ring, which adopts a slightly distorted sofa conformation. The title compound is the hydrated form of a previously reported structure [Shoja (1990 ▶). Acta Cryst. C46, 1969-1971]. There are only slight variations in the mol-ecular geometry between the two compounds.Entities:
Year: 2011 PMID: 22259537 PMCID: PMC3254395 DOI: 10.1107/S1600536811051221
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H14O5·2H2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 2419 reflections |
| θ = 3.3–28.4° | |
| µ = 0.11 mm−1 | |
| Block, yellow | |
| 0.20 × 0.15 × 0.03 mm |
| Nonius KappaCCD area-detector diffractometer | 1623 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 28.4°, θmin = 3.3° |
| φ and ω scans with κ offsets | |
| 9743 measured reflections | |
| 2021 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2021 reflections | (Δ/σ)max < 0.001 |
| 224 parameters | Δρmax = 0.38 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.1698 (7) | 0.3272 (3) | 0.39766 (8) | 0.0317 (8) | |
| O2 | −0.3650 (7) | 0.5120 (4) | 0.31855 (10) | 0.0370 (9) | |
| O3 | −0.1585 (7) | 0.3656 (4) | 0.25747 (9) | 0.0350 (8) | |
| H3 | −0.2576 | 0.4224 | 0.2686 | 0.053* | |
| O4 | 0.5380 (7) | 0.0576 (4) | 0.28692 (9) | 0.0341 (8) | |
| O5 | 0.1305 (11) | 0.5341 (6) | 0.58135 (12) | 0.0610 (15) | |
| H5 | 0.247 (18) | 0.564 (8) | 0.593 (2) | 0.07 (3)* | |
| C2 | 0.0708 (9) | 0.4690 (5) | 0.40716 (13) | 0.0266 (10) | |
| H2 | 0.1893 | 0.5381 | 0.3945 | 0.032* | |
| C3 | −0.2023 (9) | 0.4877 (6) | 0.38806 (13) | 0.0345 (12) | |
| H3A | −0.3254 | 0.4250 | 0.4018 | 0.041* | |
| H3B | −0.2613 | 0.5840 | 0.3924 | 0.041* | |
| C4 | −0.2002 (9) | 0.4562 (5) | 0.34223 (13) | 0.0265 (10) | |
| C10 | −0.0071 (9) | 0.3561 (5) | 0.32828 (12) | 0.0247 (9) | |
| C5 | 0.0125 (9) | 0.3128 (5) | 0.28607 (12) | 0.0248 (10) | |
| C6 | 0.1952 (10) | 0.2153 (5) | 0.27344 (13) | 0.0278 (10) | |
| H6 | 0.2063 | 0.1899 | 0.2457 | 0.033* | |
| C7 | 0.3658 (9) | 0.1537 (5) | 0.30263 (13) | 0.0251 (9) | |
| C8 | 0.3505 (9) | 0.1902 (5) | 0.34455 (13) | 0.0267 (9) | |
| H8 | 0.4586 | 0.1465 | 0.3639 | 0.032* | |
| C9 | 0.1720 (8) | 0.2925 (5) | 0.35667 (12) | 0.0221 (9) | |
| C1' | 0.0839 (9) | 0.4870 (5) | 0.45324 (13) | 0.0265 (10) | |
| C2' | −0.0739 (11) | 0.4059 (6) | 0.48002 (14) | 0.0379 (12) | |
| H2' | −0.1923 | 0.3410 | 0.4691 | 0.046* | |
| C3' | −0.0542 (12) | 0.4220 (6) | 0.52256 (15) | 0.0439 (14) | |
| H3' | −0.1581 | 0.3673 | 0.5400 | 0.053* | |
| C4' | 0.1203 (10) | 0.5197 (6) | 0.53925 (13) | 0.0367 (12) | |
| C5' | 0.2769 (12) | 0.6004 (6) | 0.51347 (15) | 0.0441 (14) | |
| H5' | 0.3940 | 0.6656 | 0.5246 | 0.053* | |
| C6' | 0.2585 (11) | 0.5837 (6) | 0.47061 (14) | 0.0361 (12) | |
| H6' | 0.3645 | 0.6381 | 0.4534 | 0.043* | |
| C11 | 0.7076 (11) | −0.0153 (6) | 0.31527 (15) | 0.0364 (12) | |
| H11A | 0.6039 | −0.0734 | 0.3334 | 0.055* | |
| H11B | 0.8043 | 0.0523 | 0.3314 | 0.055* | |
| H11C | 0.8280 | −0.0737 | 0.3001 | 0.055* | |
| O6 | 0.2193 (9) | 0.7134 (5) | 0.32036 (13) | 0.0500 (11) | |
| H6A | 0.354 (18) | 0.659 (8) | 0.316 (2) | 0.07 (2)* | |
| H6B | 0.209 (15) | 0.761 (6) | 0.2996 (19) | 0.06 (2)* | |
| O7 | 0.5931 (9) | 0.6486 (6) | 0.60698 (12) | 0.0586 (13) | |
| H7A | 0.7450 | 0.6441 | 0.5961 | 0.088* | |
| H7B | 0.6306 | 0.6736 | 0.6315 | 0.088* |
| O1 | 0.0332 (19) | 0.0370 (19) | 0.0248 (15) | 0.0105 (18) | −0.0035 (13) | −0.0066 (13) |
| O2 | 0.0244 (17) | 0.046 (2) | 0.0406 (18) | 0.0133 (18) | −0.0064 (14) | 0.0006 (16) |
| O3 | 0.0334 (19) | 0.039 (2) | 0.0324 (16) | 0.0081 (19) | −0.0069 (14) | 0.0014 (14) |
| O4 | 0.0292 (18) | 0.041 (2) | 0.0324 (16) | 0.0126 (17) | −0.0009 (14) | −0.0085 (14) |
| O5 | 0.061 (3) | 0.096 (4) | 0.0258 (18) | −0.028 (3) | 0.0028 (19) | −0.006 (2) |
| C2 | 0.018 (2) | 0.032 (2) | 0.030 (2) | 0.001 (2) | 0.0035 (17) | −0.0057 (18) |
| C3 | 0.022 (2) | 0.044 (3) | 0.038 (2) | 0.012 (3) | 0.0049 (19) | −0.006 (2) |
| C4 | 0.018 (2) | 0.029 (2) | 0.032 (2) | 0.000 (2) | −0.0033 (18) | 0.0001 (18) |
| C10 | 0.018 (2) | 0.028 (2) | 0.028 (2) | −0.001 (2) | 0.0005 (17) | −0.0006 (17) |
| C5 | 0.023 (2) | 0.027 (2) | 0.025 (2) | −0.005 (2) | −0.0066 (17) | 0.0041 (17) |
| C6 | 0.032 (2) | 0.031 (2) | 0.0204 (19) | 0.002 (2) | 0.0008 (18) | −0.0029 (17) |
| C7 | 0.017 (2) | 0.026 (2) | 0.032 (2) | 0.002 (2) | 0.0021 (17) | −0.0008 (18) |
| C8 | 0.023 (2) | 0.031 (2) | 0.026 (2) | 0.002 (2) | −0.0012 (17) | 0.0009 (18) |
| C9 | 0.0115 (18) | 0.029 (2) | 0.0259 (19) | −0.0042 (19) | −0.0017 (15) | −0.0002 (17) |
| C1' | 0.022 (2) | 0.029 (2) | 0.028 (2) | −0.001 (2) | −0.0004 (17) | −0.0030 (18) |
| C2' | 0.032 (3) | 0.048 (3) | 0.033 (2) | −0.008 (3) | −0.002 (2) | −0.006 (2) |
| C3' | 0.039 (3) | 0.054 (4) | 0.039 (3) | −0.012 (3) | 0.012 (2) | 0.003 (2) |
| C4' | 0.034 (3) | 0.050 (3) | 0.027 (2) | −0.001 (3) | 0.005 (2) | 0.000 (2) |
| C5' | 0.039 (3) | 0.057 (4) | 0.036 (3) | −0.008 (3) | −0.003 (2) | −0.009 (2) |
| C6' | 0.029 (3) | 0.047 (3) | 0.031 (2) | −0.012 (2) | 0.0050 (19) | −0.001 (2) |
| C11 | 0.027 (3) | 0.040 (3) | 0.042 (3) | 0.014 (3) | 0.000 (2) | −0.001 (2) |
| O6 | 0.048 (3) | 0.058 (3) | 0.044 (2) | 0.020 (2) | 0.007 (2) | 0.001 (2) |
| O7 | 0.049 (3) | 0.084 (3) | 0.042 (2) | −0.008 (3) | −0.0053 (19) | −0.007 (2) |
| O1—C9 | 1.365 (5) | C7—C8 | 1.400 (6) |
| O1—C2 | 1.465 (5) | C8—C9 | 1.383 (6) |
| O2—C4 | 1.252 (5) | C8—H8 | 0.9300 |
| O3—C5 | 1.364 (5) | C1'—C6' | 1.393 (6) |
| O3—H3 | 0.8200 | C1'—C2' | 1.408 (7) |
| O4—C7 | 1.361 (5) | C2'—C3' | 1.387 (7) |
| O4—C11 | 1.435 (6) | C2'—H2' | 0.9300 |
| O5—C4' | 1.369 (6) | C3'—C4' | 1.391 (7) |
| O5—H5 | 0.75 (8) | C3'—H3' | 0.9300 |
| C2—C1' | 1.501 (6) | C4'—C5' | 1.382 (7) |
| C2—C3 | 1.530 (6) | C5'—C6' | 1.397 (6) |
| C2—H2 | 0.9800 | C5'—H5' | 0.9300 |
| C3—C4 | 1.511 (6) | C6'—H6' | 0.9300 |
| C3—H3A | 0.9700 | C11—H11A | 0.9600 |
| C3—H3B | 0.9700 | C11—H11B | 0.9600 |
| C4—C10 | 1.437 (6) | C11—H11C | 0.9600 |
| C10—C9 | 1.426 (6) | O6—H6A | 0.87 (9) |
| C10—C5 | 1.427 (6) | O6—H6B | 0.81 (6) |
| C5—C6 | 1.372 (6) | O7—H7A | 0.8500 |
| C6—C7 | 1.408 (6) | O7—H7B | 0.8501 |
| C6—H6 | 0.9300 | ||
| C9—O1—C2 | 115.3 (3) | C9—C8—H8 | 120.6 |
| C5—O3—H3 | 109.5 | C7—C8—H8 | 120.6 |
| C7—O4—C11 | 118.0 (4) | O1—C9—C8 | 116.7 (4) |
| C4'—O5—H5 | 123 (6) | O1—C9—C10 | 121.2 (4) |
| O1—C2—C1' | 107.3 (4) | C8—C9—C10 | 122.2 (4) |
| O1—C2—C3 | 109.5 (4) | C6'—C1'—C2' | 118.3 (4) |
| C1'—C2—C3 | 115.3 (4) | C6'—C1'—C2 | 120.2 (4) |
| O1—C2—H2 | 108.2 | C2'—C1'—C2 | 121.5 (4) |
| C1'—C2—H2 | 108.2 | C3'—C2'—C1' | 120.6 (5) |
| C3—C2—H2 | 108.2 | C3'—C2'—H2' | 119.7 |
| C4—C3—C2 | 111.5 (4) | C1'—C2'—H2' | 119.7 |
| C4—C3—H3A | 109.3 | C2'—C3'—C4' | 120.2 (5) |
| C2—C3—H3A | 109.3 | C2'—C3'—H3' | 119.9 |
| C4—C3—H3B | 109.3 | C4'—C3'—H3' | 119.9 |
| C2—C3—H3B | 109.3 | O5—C4'—C5' | 121.5 (5) |
| H3A—C3—H3B | 108.0 | O5—C4'—C3' | 118.4 (5) |
| O2—C4—C10 | 123.0 (4) | C5'—C4'—C3' | 120.1 (5) |
| O2—C4—C3 | 120.7 (4) | C4'—C5'—C6' | 119.8 (5) |
| C10—C4—C3 | 116.3 (4) | C4'—C5'—H5' | 120.1 |
| C9—C10—C5 | 116.7 (4) | C6'—C5'—H5' | 120.1 |
| C9—C10—C4 | 120.9 (4) | C1'—C6'—C5' | 121.1 (4) |
| C5—C10—C4 | 122.4 (4) | C1'—C6'—H6' | 119.5 |
| O3—C5—C6 | 118.5 (4) | C5'—C6'—H6' | 119.5 |
| O3—C5—C10 | 119.9 (4) | O4—C11—H11A | 109.5 |
| C6—C5—C10 | 121.6 (4) | O4—C11—H11B | 109.5 |
| C5—C6—C7 | 119.8 (4) | H11A—C11—H11B | 109.5 |
| C5—C6—H6 | 120.1 | O4—C11—H11C | 109.5 |
| C7—C6—H6 | 120.1 | H11A—C11—H11C | 109.5 |
| O4—C7—C8 | 124.2 (4) | H11B—C11—H11C | 109.5 |
| O4—C7—C6 | 115.0 (4) | H6A—O6—H6B | 105 (6) |
| C8—C7—C6 | 120.8 (4) | H7A—O7—H7B | 101.2 |
| C9—C8—C7 | 118.9 (4) | ||
| C9—O1—C2—C1' | −180.0 (4) | C2—O1—C9—C8 | 155.2 (4) |
| C9—O1—C2—C3 | 54.2 (5) | C2—O1—C9—C10 | −26.6 (6) |
| O1—C2—C3—C4 | −54.4 (5) | C7—C8—C9—O1 | −178.2 (4) |
| C1'—C2—C3—C4 | −175.4 (4) | C7—C8—C9—C10 | 3.6 (6) |
| C2—C3—C4—O2 | −153.5 (5) | C5—C10—C9—O1 | 179.7 (4) |
| C2—C3—C4—C10 | 28.6 (6) | C4—C10—C9—O1 | −1.7 (6) |
| O2—C4—C10—C9 | −178.3 (4) | C5—C10—C9—C8 | −2.2 (6) |
| C3—C4—C10—C9 | −0.5 (6) | C4—C10—C9—C8 | 176.4 (4) |
| O2—C4—C10—C5 | 0.3 (7) | O1—C2—C1'—C6' | 112.6 (5) |
| C3—C4—C10—C5 | 178.0 (4) | C3—C2—C1'—C6' | −125.2 (5) |
| C9—C10—C5—O3 | 177.7 (4) | O1—C2—C1'—C2' | −66.1 (6) |
| C4—C10—C5—O3 | −0.9 (7) | C3—C2—C1'—C2' | 56.1 (6) |
| C9—C10—C5—C6 | −0.2 (6) | C6'—C1'—C2'—C3' | −0.3 (8) |
| C4—C10—C5—C6 | −178.8 (4) | C2—C1'—C2'—C3' | 178.5 (5) |
| O3—C5—C6—C7 | −176.9 (4) | C1'—C2'—C3'—C4' | 0.6 (8) |
| C10—C5—C6—C7 | 1.1 (7) | C2'—C3'—C4'—O5 | 178.9 (5) |
| C11—O4—C7—C8 | 2.6 (7) | C2'—C3'—C4'—C5' | −0.6 (9) |
| C11—O4—C7—C6 | −176.5 (4) | O5—C4'—C5'—C6' | −179.3 (5) |
| C5—C6—C7—O4 | 179.5 (4) | C3'—C4'—C5'—C6' | 0.2 (9) |
| C5—C6—C7—C8 | 0.4 (7) | C2'—C1'—C6'—C5' | −0.1 (8) |
| O4—C7—C8—C9 | 178.2 (4) | C2—C1'—C6'—C5' | −178.9 (5) |
| C6—C7—C8—C9 | −2.7 (7) | C4'—C5'—C6'—C1' | 0.2 (9) |
| H··· | ||||
| O3—H3···O2 | 0.82 | 1.90 | 2.630 (5) | 147 |
| O5—H5···O7 | 0.76 (9) | 1.99 (9) | 2.720 (7) | 163 (7) |
| O6—H6A···O2i | 0.87 (9) | 2.00 (8) | 2.847 (6) | 166 (7) |
| O6—H6B···O3ii | 0.81 (6) | 2.11 (6) | 2.915 (5) | 174 (8) |
| O7—H7A···O5i | 0.85 | 2.27 | 3.055 (7) | 153 |
| O7—H7B···O6iii | 0.85 | 1.94 | 2.763 (6) | 163 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯O2 | 0.82 | 1.90 | 2.630 (5) | 147 |
| O5—H5⋯O7 | 0.76 (9) | 1.99 (9) | 2.720 (7) | 163 (7) |
| O6—H6 | 0.87 (9) | 2.00 (8) | 2.847 (6) | 166 (7) |
| O6—H6 | 0.81 (6) | 2.11 (6) | 2.915 (5) | 174 (8) |
| O7—H7 | 0.85 | 2.27 | 3.055 (7) | 153 |
| O7—H7 | 0.85 | 1.94 | 2.763 (6) | 163 |
Symmetry codes: (i) ; (ii) ; (iii) .