Literature DB >> 22259535

4-[(Hy-droxy)(4-methyl-phen-yl)methyl-idene]isochroman-1,3-dione.

Akoun Abou, Abdoulaye Djandé, Adama Saba, Thierry Chiavassa, Rita Kakou-Yao.   

Abstract

In the title compound, C(17)H(12)O(4), the six-membered heterocyclic ring adopts a distorted screw-boat conformation. The mol-ecular structure exhibits an S(6) ring motif, owing to an intra-molecular O-H⋯O hydrogen bond. In the crystal, weak C-H⋯O contacts generate an infinite chain along the c axis. There are also π-π stacking inter-actions between neighbouring isochromanedione benzene rings, with a centroid-centroid distance of 3.755 (1) Å, and C-O⋯π inter-actions with an O⋯centroid distance of 3.964 (2) Å.

Entities:  

Year:  2011        PMID: 22259535      PMCID: PMC3254283          DOI: 10.1107/S1600536811050975

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of isochromanones, see: Bianchi et al., (2004 ▶); Buntin et al. (2008 ▶). For π–π stacking inter­actions, see: Janiak (2000 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C17H12O4 M = 280.27 Monoclinic, a = 15.6767 (6) Å b = 5.9655 (2) Å c = 14.4589 (4) Å β = 102.961 (1)° V = 1317.74 (8) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.40 × 0.34 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer 12419 measured reflections 3304 independent reflections 2684 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.150 S = 1.08 3304 reflections 193 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.16 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97, publCIF (Westrip, 2010 ▶) and WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811050975/fj2488sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050975/fj2488Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811050975/fj2488Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H12O4F(000) = 584
Mr = 280.27Dx = 1.413 Mg m3
Monoclinic, P21/cMelting point = 387–388 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 15.6767 (6) ÅCell parameters from 12419 reflections
b = 5.9655 (2) Åθ = 2.9–29.0°
c = 14.4589 (4) ŵ = 0.10 mm1
β = 102.961 (1)°T = 298 K
V = 1317.74 (8) Å3Prism, yellow
Z = 40.40 × 0.34 × 0.10 mm
Nonius KappaCCD diffractometer2684 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.053
graphiteθmax = 29.0°, θmin = 2.9°
φ and ω scansh = −21→20
12419 measured reflectionsk = −7→7
3304 independent reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.150w = 1/[σ2(Fo2) + (0.0625P)2 + 0.424P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
3304 reflectionsΔρmax = 0.20 e Å3
193 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
48 constraintsExtinction coefficient: 0.11 (2)
Primary atom site location: structure-invariant direct methods
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. The 2 reflections [(-5 2 1), (2 0 0)] whith (Iobs-Icalc)/Sigma(I) superior to 10, are not used in the refinement. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.85227 (9)0.2252 (2)0.70711 (8)0.0608 (4)
C50.83327 (9)0.3569 (2)0.51682 (9)0.0361 (3)
C40.88171 (10)0.4900 (3)0.59015 (10)0.0420 (4)
O30.77485 (10)−0.0788 (3)0.66859 (10)0.0690 (4)
O40.69333 (9)−0.1556 (2)0.50349 (10)0.0632 (4)
H40.7147−0.18020.55970.095*
C150.59439 (11)0.3609 (3)0.27099 (12)0.0484 (4)
H150.56560.49790.25990.058*
C10.78494 (10)0.1628 (3)0.54105 (10)0.0405 (4)
C60.83808 (10)0.4128 (3)0.42383 (10)0.0401 (4)
H60.81100.32110.37380.048*
C90.92667 (11)0.6800 (3)0.57079 (12)0.0514 (4)
H90.95790.76700.62040.062*
C160.63851 (10)0.3071 (3)0.36170 (12)0.0454 (4)
H160.64030.40890.41080.054*
C110.68042 (10)0.1011 (3)0.38016 (11)0.0412 (4)
C100.72372 (10)0.0383 (3)0.47841 (12)0.0441 (4)
C120.67731 (11)−0.0477 (3)0.30589 (13)0.0515 (4)
H120.7043−0.18700.31730.062*
C80.92474 (12)0.7385 (3)0.47832 (13)0.0530 (4)
H80.95190.86930.46480.064*
C30.89085 (12)0.4261 (3)0.68931 (11)0.0532 (5)
O20.93083 (11)0.5246 (3)0.75773 (9)0.0782 (5)
C140.59194 (10)0.2147 (3)0.19552 (12)0.0487 (4)
C130.63411 (12)0.0107 (3)0.21485 (13)0.0567 (5)
H130.6334−0.08960.16540.068*
C70.88200 (11)0.6007 (3)0.40553 (11)0.0461 (4)
H70.88310.63600.34320.055*
C20.80260 (12)0.0934 (3)0.63907 (12)0.0504 (4)
C170.54283 (14)0.2771 (4)0.09711 (14)0.0719 (6)
H17A0.48140.25110.09130.108*
H17B0.56340.18740.05140.108*
H17C0.55240.43270.08590.108*
U11U22U33U12U13U23
O10.0781 (9)0.0731 (9)0.0303 (6)0.0141 (7)0.0104 (5)0.0079 (5)
C50.0390 (7)0.0374 (8)0.0311 (7)0.0060 (5)0.0063 (5)−0.0008 (5)
C40.0461 (8)0.0458 (9)0.0313 (7)0.0105 (6)0.0029 (6)−0.0061 (6)
O30.0837 (10)0.0700 (9)0.0572 (8)0.0078 (7)0.0242 (7)0.0287 (7)
O40.0656 (8)0.0478 (7)0.0736 (9)−0.0084 (6)0.0102 (7)0.0191 (6)
C150.0448 (8)0.0428 (9)0.0566 (10)0.0044 (7)0.0092 (7)0.0052 (7)
C10.0452 (8)0.0419 (8)0.0357 (7)0.0064 (6)0.0116 (6)0.0047 (6)
C60.0435 (8)0.0450 (8)0.0306 (7)−0.0051 (6)0.0056 (6)−0.0029 (6)
C90.0527 (9)0.0473 (9)0.0474 (9)−0.0001 (7)−0.0031 (7)−0.0147 (7)
C160.0481 (8)0.0383 (8)0.0491 (9)0.0034 (6)0.0094 (7)−0.0026 (6)
C110.0382 (7)0.0355 (8)0.0482 (8)−0.0021 (6)0.0064 (6)0.0002 (6)
C100.0463 (8)0.0371 (8)0.0509 (9)0.0039 (6)0.0149 (7)0.0069 (6)
C120.0520 (9)0.0383 (9)0.0606 (10)0.0032 (7)0.0048 (8)−0.0059 (7)
C80.0551 (10)0.0438 (9)0.0567 (10)−0.0094 (7)0.0053 (8)−0.0031 (7)
C30.0648 (11)0.0583 (11)0.0328 (8)0.0203 (8)0.0030 (7)−0.0057 (7)
O20.1091 (12)0.0797 (10)0.0345 (6)0.0199 (9)−0.0081 (7)−0.0154 (6)
C140.0380 (8)0.0586 (10)0.0478 (9)−0.0055 (7)0.0060 (6)0.0021 (7)
C130.0563 (10)0.0564 (11)0.0544 (10)−0.0008 (8)0.0059 (8)−0.0161 (8)
C70.0487 (9)0.0504 (9)0.0380 (8)−0.0070 (7)0.0069 (6)0.0024 (6)
C20.0563 (10)0.0564 (10)0.0414 (8)0.0153 (8)0.0169 (7)0.0108 (7)
C170.0641 (12)0.0963 (17)0.0503 (11)−0.0034 (11)0.0024 (9)0.0090 (10)
O1—C21.360 (2)C9—H90.9300
O1—C31.392 (2)C16—C111.391 (2)
C5—C41.404 (2)C16—H160.9300
C5—C61.404 (2)C11—C121.386 (2)
C5—C11.469 (2)C11—C101.479 (2)
C4—C91.396 (2)C12—C131.383 (3)
C4—C31.459 (2)C12—H120.9300
O3—C21.229 (2)C8—C71.384 (2)
O4—C101.3316 (19)C8—H80.9300
O4—H40.8200C3—O21.199 (2)
C15—C161.376 (2)C14—C131.383 (3)
C15—C141.391 (2)C14—C171.505 (2)
C15—H150.9300C13—H130.9300
C1—C101.380 (2)C7—H70.9300
C1—C21.443 (2)C17—H17A0.9600
C6—C71.372 (2)C17—H17B0.9600
C6—H60.9300C17—H17C0.9600
C9—C81.376 (3)
C2—O1—C3124.49 (13)C1—C10—C11126.59 (14)
C4—C5—C6116.93 (14)C13—C12—C11120.05 (16)
C4—C5—C1119.11 (13)C13—C12—H12120.0
C6—C5—C1123.87 (13)C11—C12—H12120.0
C9—C4—C5121.33 (14)C9—C8—C7119.32 (16)
C9—C4—C3117.80 (15)C9—C8—H8120.3
C5—C4—C3120.78 (16)C7—C8—H8120.3
C10—O4—H4109.5O2—C3—O1115.94 (16)
C16—C15—C14121.40 (16)O2—C3—C4126.9 (2)
C16—C15—H15119.3O1—C3—C4117.10 (15)
C14—C15—H15119.3C13—C14—C15117.73 (15)
C10—C1—C2116.26 (15)C13—C14—C17121.93 (18)
C10—C1—C5126.02 (13)C15—C14—C17120.32 (17)
C2—C1—C5117.72 (14)C12—C13—C14121.58 (16)
C7—C6—C5121.07 (14)C12—C13—H13119.2
C7—C6—H6119.5C14—C13—H13119.2
C5—C6—H6119.5C6—C7—C8121.13 (15)
C8—C9—C4119.92 (15)C6—C7—H7119.4
C8—C9—H9120.0C8—C7—H7119.4
C4—C9—H9120.0O3—C2—O1114.97 (15)
C15—C16—C11120.24 (16)O3—C2—C1125.20 (18)
C15—C16—H16119.9O1—C2—C1119.82 (16)
C11—C16—H16119.9C14—C17—H17A109.5
C12—C11—C16118.97 (15)C14—C17—H17B109.5
C12—C11—C10120.72 (14)H17A—C17—H17B109.5
C16—C11—C10120.24 (15)C14—C17—H17C109.5
O4—C10—C1121.84 (15)H17A—C17—H17C109.5
O4—C10—C11111.50 (14)H17B—C17—H17C109.5
C6—C5—C4—C95.1 (2)C16—C11—C12—C130.9 (3)
C1—C5—C4—C9−178.11 (14)C10—C11—C12—C13177.89 (16)
C6—C5—C4—C3−171.19 (14)C4—C9—C8—C7−3.5 (3)
C1—C5—C4—C35.6 (2)C2—O1—C3—O2178.20 (16)
C4—C5—C1—C10168.82 (15)C2—O1—C3—C4−4.3 (2)
C6—C5—C1—C10−14.7 (2)C9—C4—C3—O23.0 (3)
C4—C5—C1—C2−11.4 (2)C5—C4—C3—O2179.43 (17)
C6—C5—C1—C2165.14 (14)C9—C4—C3—O1−174.25 (14)
C4—C5—C6—C7−5.5 (2)C5—C4—C3—O12.2 (2)
C1—C5—C6—C7177.88 (14)C16—C15—C14—C131.2 (2)
C5—C4—C9—C8−0.7 (2)C16—C15—C14—C17179.69 (16)
C3—C4—C9—C8175.73 (16)C11—C12—C13—C14−1.1 (3)
C14—C15—C16—C11−1.4 (3)C15—C14—C13—C120.1 (3)
C15—C16—C11—C120.3 (2)C17—C14—C13—C12−178.41 (18)
C15—C16—C11—C10−176.67 (15)C5—C6—C7—C81.5 (3)
C2—C1—C10—O4−10.7 (2)C9—C8—C7—C63.2 (3)
C5—C1—C10—O4169.10 (15)C3—O1—C2—O3179.33 (15)
C2—C1—C10—C11165.94 (15)C3—O1—C2—C1−1.8 (2)
C5—C1—C10—C11−14.3 (3)C10—C1—C2—O38.2 (2)
C12—C11—C10—O4−52.7 (2)C5—C1—C2—O3−171.65 (16)
C16—C11—C10—O4124.25 (16)C10—C1—C2—O1−170.55 (14)
C12—C11—C10—C1130.41 (18)C5—C1—C2—O19.6 (2)
C16—C11—C10—C1−52.7 (2)
D—H···AD—HH···AD···AD—H···A
O4—H4···O30.821.752.485 (2)148
C7—H7···O2i0.932.573.299 (2)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O30.821.752.485 (2)148
C7—H7⋯O2i0.932.573.299 (2)136

Symmetry code: (i) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Darío A Bianchi; Nicolás E Blanco; Néstor Carrillo; Teodoro S Kaufman
Journal:  J Agric Food Chem       Date:  2004-04-07       Impact factor: 5.279

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Authors:  Kathrin Buntin; Shwan Rachid; Maren Scharfe; Helmut Blöcker; Kira J Weissman; Rolf Müller
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4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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