Literature DB >> 22259521

2-[(3S)-5-Oxooxolan-3-yl]isoindoline-1,3-dione.

Hui Wang1, Changlu Liu, Feihua Luo.   

Abstract

The oxolan-2-one ring in the title compound, C(12)H(9)NO(4), has an envelope conformation with the atom linking the two five-membered rings being the flap atom.

Entities:  

Year:  2011        PMID: 22259521      PMCID: PMC3254364          DOI: 10.1107/S160053681105135X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Temperini et al. (2010 ▶). For the structure of the closely related compound, 2-(2,5-dioxotetra­hydro­furan-3-yl)isoindoline-1,3-dione, see: Qian (2008 ▶).

Experimental

Crystal data

C12H9NO4 M = 231.20 Orthorhombic, a = 5.7224 (3) Å b = 10.5839 (5) Å c = 16.8532 (10) Å V = 1020.72 (9) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.20 × 0.20 × 0.14 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.977, T max = 0.984 4468 measured reflections 1077 independent reflections 1002 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.073 S = 1.20 1077 reflections 154 parameters H-atom parameters constrained Δρmax = 0.10 e Å−3 Δρmin = −0.13 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681105135X/lh5369sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681105135X/lh5369Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681105135X/lh5369Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9NO4F(000) = 480
Mr = 231.20Dx = 1.505 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2599 reflections
a = 5.7224 (3) Åθ = 2.3–27.2°
b = 10.5839 (5) ŵ = 0.12 mm1
c = 16.8532 (10) ÅT = 296 K
V = 1020.72 (9) Å3Block, colourless
Z = 40.20 × 0.20 × 0.14 mm
Bruker SMART CCD area-detector diffractometer1077 independent reflections
Radiation source: fine-focus sealed tube1002 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→6
Tmin = 0.977, Tmax = 0.984k = −12→12
4468 measured reflectionsl = −19→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.073H-atom parameters constrained
S = 1.20w = 1/[σ2(Fo2) + (0.0366P)2 + 0.0827P] where P = (Fo2 + 2Fc2)/3
1077 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.10 e Å3
0 restraintsΔρmin = −0.13 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8388 (3)0.49330 (17)0.93941 (11)0.0362 (4)
C20.6577 (4)0.5765 (2)0.95245 (13)0.0445 (5)
H20.54240.59000.91450.053*
C30.6548 (4)0.6395 (2)1.02494 (13)0.0493 (5)
H30.53470.69601.03600.059*
C40.8280 (4)0.6193 (2)1.08081 (13)0.0501 (5)
H40.82200.66271.12880.060*
C51.0100 (4)0.5361 (2)1.06693 (13)0.0470 (5)
H51.12680.52321.10440.056*
C61.0115 (3)0.47294 (17)0.99517 (11)0.0365 (4)
C71.1748 (3)0.37695 (18)0.96411 (11)0.0366 (4)
C80.8880 (3)0.41079 (18)0.87031 (11)0.0371 (4)
C91.2036 (4)0.2499 (2)0.83890 (11)0.0422 (5)
H91.33920.21520.86690.051*
C101.0378 (4)0.1429 (2)0.81692 (13)0.0500 (6)
H10A1.11730.06210.81920.060*
H10B0.90510.14080.85270.060*
C110.9611 (4)0.1714 (2)0.73468 (13)0.0449 (5)
C121.2804 (4)0.2984 (2)0.75729 (11)0.0524 (6)
H12A1.29110.38980.75750.063*
H12B1.43180.26390.74320.063*
N11.0948 (3)0.34698 (16)0.88763 (9)0.0351 (4)
O11.3448 (3)0.33039 (14)0.99497 (8)0.0510 (4)
O20.7776 (3)0.39782 (15)0.80953 (9)0.0510 (4)
O31.1040 (3)0.25678 (15)0.70162 (8)0.0522 (4)
O40.8005 (3)0.12687 (16)0.69809 (11)0.0653 (5)
U11U22U33U12U13U23
C10.0359 (10)0.0372 (10)0.0356 (10)−0.0026 (9)0.0013 (9)0.0020 (8)
C20.0405 (11)0.0454 (11)0.0476 (12)0.0047 (9)0.0003 (10)0.0038 (10)
C30.0514 (12)0.0423 (11)0.0543 (13)0.0063 (11)0.0120 (11)−0.0014 (10)
C40.0613 (13)0.0461 (11)0.0429 (12)0.0036 (11)0.0050 (11)−0.0071 (10)
C50.0543 (12)0.0460 (12)0.0406 (12)0.0020 (10)−0.0040 (10)−0.0038 (9)
C60.0408 (9)0.0344 (10)0.0342 (10)−0.0010 (8)0.0003 (9)0.0027 (8)
C70.0396 (10)0.0371 (10)0.0332 (10)−0.0022 (9)−0.0040 (9)0.0023 (8)
C80.0360 (9)0.0384 (10)0.0369 (10)−0.0005 (8)−0.0034 (9)0.0024 (8)
C90.0442 (10)0.0453 (11)0.0371 (11)0.0112 (10)−0.0067 (9)−0.0038 (9)
C100.0698 (14)0.0366 (11)0.0436 (12)0.0036 (11)−0.0023 (11)−0.0004 (9)
C110.0484 (13)0.0404 (11)0.0460 (12)0.0097 (10)−0.0052 (10)−0.0094 (10)
C120.0452 (12)0.0686 (16)0.0435 (12)−0.0027 (12)0.0070 (10)−0.0075 (11)
N10.0370 (8)0.0379 (9)0.0306 (8)0.0039 (7)−0.0028 (7)−0.0008 (7)
O10.0515 (8)0.0563 (9)0.0452 (8)0.0123 (8)−0.0160 (8)−0.0030 (7)
O20.0479 (8)0.0621 (10)0.0430 (8)0.0088 (8)−0.0144 (7)−0.0063 (7)
O30.0560 (8)0.0674 (10)0.0331 (8)0.0037 (9)−0.0010 (7)0.0007 (8)
O40.0620 (9)0.0601 (10)0.0737 (11)0.0063 (9)−0.0234 (10)−0.0173 (9)
C1—C21.378 (3)C8—O21.211 (2)
C1—C61.381 (3)C8—N11.394 (2)
C1—C81.482 (3)C9—N11.455 (2)
C2—C31.392 (3)C9—C101.523 (3)
C2—H20.9300C9—C121.532 (3)
C3—C41.383 (3)C9—H90.9800
C3—H30.9300C10—C111.484 (3)
C4—C51.384 (3)C10—H10A0.9700
C4—H40.9300C10—H10B0.9700
C5—C61.382 (3)C11—O41.203 (2)
C5—H50.9300C11—O31.340 (3)
C6—C71.476 (3)C12—O31.446 (3)
C7—O11.208 (2)C12—H12A0.9700
C7—N11.404 (2)C12—H12B0.9700
C2—C1—C6121.98 (18)N1—C9—C12113.13 (18)
C2—C1—C8130.15 (18)C10—C9—C12102.07 (17)
C6—C1—C8107.87 (16)N1—C9—H9109.4
C1—C2—C3117.1 (2)C10—C9—H9109.4
C1—C2—H2121.5C12—C9—H9109.4
C3—C2—H2121.5C11—C10—C9105.11 (18)
C4—C3—C2121.0 (2)C11—C10—H10A110.7
C4—C3—H3119.5C9—C10—H10A110.7
C2—C3—H3119.5C11—C10—H10B110.7
C3—C4—C5121.5 (2)C9—C10—H10B110.7
C3—C4—H4119.3H10A—C10—H10B108.8
C5—C4—H4119.3O4—C11—O3121.1 (2)
C6—C5—C4117.4 (2)O4—C11—C10128.7 (2)
C6—C5—H5121.3O3—C11—C10110.14 (18)
C4—C5—H5121.3O3—C12—C9106.29 (18)
C1—C6—C5121.05 (19)O3—C12—H12A110.5
C1—C6—C7108.61 (16)C9—C12—H12A110.5
C5—C6—C7130.32 (19)O3—C12—H12B110.5
O1—C7—N1124.45 (19)C9—C12—H12B110.5
O1—C7—C6129.62 (19)H12A—C12—H12B108.7
N1—C7—C6105.93 (15)C8—N1—C7111.08 (16)
O2—C8—N1124.41 (18)C8—N1—C9125.97 (16)
O2—C8—C1129.20 (18)C7—N1—C9122.54 (16)
N1—C8—C1106.39 (16)C11—O3—C12111.18 (16)
N1—C9—C10113.28 (16)
C6—C1—C2—C3−0.3 (3)C12—C9—C10—C11−21.9 (2)
C8—C1—C2—C3178.4 (2)C9—C10—C11—O4−165.3 (2)
C1—C2—C3—C40.4 (3)C9—C10—C11—O316.2 (2)
C2—C3—C4—C50.0 (3)N1—C9—C12—O3−101.25 (19)
C3—C4—C5—C6−0.4 (3)C10—C9—C12—O320.8 (2)
C2—C1—C6—C5−0.2 (3)O2—C8—N1—C7−176.92 (19)
C8—C1—C6—C5−179.17 (18)C1—C8—N1—C73.3 (2)
C2—C1—C6—C7178.63 (17)O2—C8—N1—C9−4.1 (3)
C8—C1—C6—C7−0.3 (2)C1—C8—N1—C9176.10 (18)
C4—C5—C6—C10.6 (3)O1—C7—N1—C8176.68 (18)
C4—C5—C6—C7−177.97 (19)C6—C7—N1—C8−3.45 (19)
C1—C6—C7—O1−177.9 (2)O1—C7—N1—C93.6 (3)
C5—C6—C7—O10.8 (4)C6—C7—N1—C9−176.58 (16)
C1—C6—C7—N12.3 (2)C10—C9—N1—C8−52.5 (3)
C5—C6—C7—N1−179.1 (2)C12—C9—N1—C863.0 (2)
C2—C1—C8—O2−0.4 (4)C10—C9—N1—C7119.54 (18)
C6—C1—C8—O2178.5 (2)C12—C9—N1—C7−124.9 (2)
C2—C1—C8—N1179.41 (19)O4—C11—O3—C12178.82 (19)
C6—C1—C8—N1−1.7 (2)C10—C11—O3—C12−2.6 (2)
N1—C9—C10—C11100.02 (19)C9—C12—O3—C11−12.1 (2)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(2,5-Dioxotetra-hydro-furan-3-yl)isoindoline-1,3-dione.

Authors:  Shao-Song Qian
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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