| Literature DB >> 22259517 |
Thomas Gelbrich1, Denise Rossi, Ulrich J Griesser.
Abstract
The tetra-gonal polymorph of 5,5-dichloro-barbituric acid (m.p. 478 K), C(4)H(2)Cl(2)N(2)O(3), forms an N-H⋯O hydrogen-bonded tape structure along [001]. Two tapes related by a twofold rotation axis are associated via Cl⋯O contacts [3.201 (1) Å], and four such chain pairs are arranged around a fourfold roto-inversion axis. The crystal structures of the monoclinic and ortho-rhom-bic polymorphs have been reported previously [Gelbrich et al. (2011 ▶). CrystEngComm, 13, 5502-5509].Entities:
Year: 2011 PMID: 22259517 PMCID: PMC3254567 DOI: 10.1107/S1600536811054626
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H2Cl2N2O3 | |
| Melting point: 478 K | |
| Tetragonal, | Mo |
| Hall symbol: P -4 2n | Cell parameters from 5173 reflections |
| θ = 2.9–29.3° | |
| µ = 0.92 mm−1 | |
| Needle, colourless | |
| 0.20 × 0.05 × 0.05 mm |
| Oxford Diffraction Xcalibur Ruby Gemini ultra diffractometer | 1310 independent reflections |
| Radiation source: Enhance Ultra (Mo) X-ray Source | 1242 reflections with |
| mirror | |
| ω scans | θmax = 26.0°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 11025 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | All H-atom parameters refined |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.20 e Å−3 | |
| 1310 reflections | Δρmin = −0.16 e Å−3 |
| 107 parameters | Extinction correction: |
| 2 restraints | Extinction coefficient: 0.0046 (8) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 541 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: −0.08 (7) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.40679 (3) | 0.41812 (3) | 0.32982 (7) | 0.01953 (13) | |
| Cl2 | 0.26242 (3) | 0.27671 (3) | 0.22840 (7) | 0.01938 (13) | |
| O2 | 0.53042 (10) | 0.10721 (9) | −0.1061 (2) | 0.0225 (3) | |
| O4 | 0.37178 (9) | 0.39086 (9) | −0.0966 (2) | 0.0178 (3) | |
| O6 | 0.44620 (11) | 0.22096 (11) | 0.4808 (2) | 0.0260 (4) | |
| N1 | 0.48923 (11) | 0.16639 (11) | 0.1869 (2) | 0.0158 (3) | |
| N3 | 0.44480 (11) | 0.24555 (11) | −0.0993 (2) | 0.0127 (3) | |
| C2 | 0.49068 (12) | 0.16895 (13) | −0.0125 (3) | 0.0134 (4) | |
| C4 | 0.40209 (13) | 0.32207 (12) | −0.0102 (3) | 0.0120 (4) | |
| C5 | 0.38637 (12) | 0.30971 (12) | 0.2083 (3) | 0.0131 (4) | |
| C6 | 0.44390 (12) | 0.22935 (13) | 0.3078 (3) | 0.0148 (4) | |
| H1 | 0.5202 (13) | 0.1184 (10) | 0.233 (3) | 0.018* | |
| H3 | 0.4508 (14) | 0.2465 (15) | −0.2243 (14) | 0.018* |
| Cl1 | 0.0247 (2) | 0.0140 (2) | 0.0199 (2) | 0.0036 (2) | −0.0065 (2) | −0.00722 (19) |
| Cl2 | 0.0156 (2) | 0.0263 (2) | 0.0162 (2) | −0.00433 (19) | 0.00163 (18) | 0.00387 (19) |
| O2 | 0.0286 (8) | 0.0197 (7) | 0.0193 (7) | 0.0098 (6) | 0.0067 (6) | −0.0037 (6) |
| O4 | 0.0212 (7) | 0.0149 (7) | 0.0172 (7) | 0.0031 (5) | 0.0002 (6) | 0.0056 (6) |
| O6 | 0.0414 (9) | 0.0266 (8) | 0.0100 (7) | 0.0112 (7) | −0.0030 (6) | 0.0013 (6) |
| N1 | 0.0221 (8) | 0.0124 (7) | 0.0128 (8) | 0.0072 (6) | −0.0019 (7) | 0.0002 (7) |
| N3 | 0.0165 (8) | 0.0151 (8) | 0.0065 (7) | 0.0004 (6) | 0.0010 (6) | −0.0011 (7) |
| C2 | 0.0122 (9) | 0.0134 (9) | 0.0148 (10) | −0.0017 (7) | 0.0013 (8) | 0.0001 (8) |
| C4 | 0.0091 (9) | 0.0132 (9) | 0.0136 (9) | −0.0027 (7) | −0.0006 (8) | −0.0006 (7) |
| C5 | 0.0133 (8) | 0.0130 (8) | 0.0129 (9) | 0.0006 (7) | 0.0007 (7) | −0.0046 (7) |
| C6 | 0.0173 (9) | 0.0140 (9) | 0.0130 (10) | −0.0002 (7) | −0.0021 (7) | −0.0006 (8) |
| Cl1—C5 | 1.7471 (18) | N1—H1 | 0.856 (9) |
| Cl2—C5 | 1.7868 (18) | N3—C4 | 1.364 (2) |
| O2—C2 | 1.208 (2) | N3—C2 | 1.378 (2) |
| O4—C4 | 1.203 (2) | N3—H3 | 0.868 (9) |
| O6—C6 | 1.202 (2) | C4—C5 | 1.536 (3) |
| N1—C6 | 1.363 (2) | C5—C6 | 1.535 (2) |
| N1—C2 | 1.379 (2) | ||
| C6—N1—C2 | 127.07 (17) | N3—C4—C5 | 114.75 (16) |
| C6—N1—H1 | 120.1 (14) | C6—C5—C4 | 116.60 (15) |
| C2—N1—H1 | 112.9 (14) | C6—C5—Cl1 | 109.07 (12) |
| C4—N3—C2 | 127.31 (17) | C4—C5—Cl1 | 110.70 (13) |
| C4—N3—H3 | 118.6 (14) | C6—C5—Cl2 | 106.27 (12) |
| C2—N3—H3 | 113.6 (14) | C4—C5—Cl2 | 104.00 (12) |
| O2—C2—N3 | 121.74 (17) | Cl1—C5—Cl2 | 109.88 (10) |
| O2—C2—N1 | 121.60 (18) | O6—C6—N1 | 122.37 (18) |
| N3—C2—N1 | 116.65 (16) | O6—C6—C5 | 122.00 (17) |
| O4—C4—N3 | 123.15 (18) | N1—C6—C5 | 115.60 (16) |
| O4—C4—C5 | 121.84 (17) |
| H··· | ||||
| N3—H3···O6i | 0.87 (1) | 2.07 (1) | 2.923 (2) | 167.(2) |
| N1—H1···O2ii | 0.86 (1) | 2.05 (1) | 2.881 (2) | 165 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3⋯O6i | 0.87 (1) | 2.07 (1) | 2.923 (2) | 167 (2) |
| N1—H1⋯O2ii | 0.86 (1) | 2.05 (1) | 2.881 (2) | 165 (2) |
Symmetry codes: (i) ; (ii) .