Literature DB >> 22259514

(3S*,4S*,E)-tert-Butyl 3,4-dibromo-5-oxo-cyclo-oct-1-ene-carboxyl-ate.

Magda Blanco, Narciso M Garrido, Francisca Sanz, David Diez.   

Abstract

The title compound, C(13)H(18)Br(2)O(3), was prepared by a bromination reaction of (1E,3Z)-methyl 5-oxocyclo-octa-1,3-diene-carboxyl-ate, which was obtained by an ep-oxy-dation reaction of tert-butyl cyclo-oct-1,3-diene-carboxyl-ate. The crystal structure confirms unequivocally the absolute configuration of both chiral centres to be S. In the crystal, C-H⋯O inter-actions link the mol-ecules into chains running along the c axis.

Entities:  

Year:  2011        PMID: 22259514      PMCID: PMC3254564          DOI: 10.1107/S1600536811053852

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the Michael addition of enanti­omerically pure lithium amides, see: Davies et al. (2005 ▶). For their importance in pharmacology, see: Fülöp et al. (2001 ▶). For the reactivity of the cyclo­octa-1,5-diene in basic medium, see: Huber et al. (1969 ▶, 1970 ▶). For the preparation of analogous unsaturated cyclo­octane esters, see: Garrido et al. (2008 ▶).

Experimental

Crystal data

C13H18Br2O3 M = 382.09 Orthorhombic, a = 14.0658 (4) Å b = 9.5990 (3) Å c = 11.2657 (3) Å V = 1521.07 (8) Å3 Z = 4 Cu Kα radiation μ = 6.76 mm−1 T = 298 K 0.24 × 0.14 × 0.10 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.370, T max = 0.509 10215 measured reflections 2170 independent reflections 2153 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.075 S = 1.09 2170 reflections 166 parameters 1 restraint H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.46 e Å−3 Absolute structure: Flack (1983 ▶), 803 Friedel pairs Flack parameter: 0.06 (3) Data collection: APEX2 (Bruker 2006 ▶); cell refinement: SAINT (Bruker 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811053852/bt5753sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053852/bt5753Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811053852/bt5753Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18Br2O3F(000) = 760
Mr = 382.09Dx = 1.669 Mg m3
Orthorhombic, Pca21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2c -2acCell parameters from 9578 reflections
a = 14.0658 (4) Åθ = 4.6–66.5°
b = 9.5990 (3) ŵ = 6.76 mm1
c = 11.2657 (3) ÅT = 298 K
V = 1521.07 (8) Å3Prismatic, colourless
Z = 40.24 × 0.14 × 0.10 mm
Bruker APEXII CCD area-detector diffractometer2170 independent reflections
Radiation source: fine-focus sealed tube2153 reflections with I > 2σ(I)
graphiteRint = 0.048
phi and ω scansθmax = 66.5°, θmin = 4.6°
Absorption correction: multi-scan (SADABS; Bruker, 2006)h = −16→16
Tmin = 0.370, Tmax = 0.509k = −11→11
10215 measured reflectionsl = −10→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.075w = 1/[σ2(Fo2) + (0.0448P)2 + 0.2923P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
2170 reflectionsΔρmax = 0.32 e Å3
166 parametersΔρmin = −0.46 e Å3
1 restraintAbsolute structure: Flack (1983), 803 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.06 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.76354 (2)0.96781 (4)0.67951 (5)0.04630 (14)
Br20.94176 (3)0.72748 (4)0.77399 (5)0.05922 (16)
O10.9457 (2)1.4186 (4)1.0183 (4)0.0671 (10)
O20.79492 (19)1.3427 (3)0.9957 (3)0.0429 (6)
O30.9590 (2)0.9175 (4)1.0552 (3)0.0605 (8)
C10.9148 (3)1.2311 (3)0.8856 (4)0.0368 (7)
C20.8510 (2)1.1346 (3)0.8551 (3)0.0359 (7)
H20.78901.14500.88240.043*
C30.8733 (2)1.0108 (3)0.7796 (4)0.0350 (7)
H30.92851.03130.72940.042*
C40.8964 (3)0.8890 (4)0.8617 (3)0.0403 (7)
H40.83910.86320.90600.048*
C50.9749 (3)0.9286 (4)0.9494 (4)0.0403 (8)
C61.0669 (3)0.9841 (5)0.9021 (4)0.0481 (10)
H6B1.07000.96520.81760.058*
H6A1.11890.93470.93980.058*
C71.0806 (3)1.1419 (5)0.9221 (5)0.0503 (10)
H7B1.06851.16271.00500.060*
H7A1.14631.16550.90570.060*
C81.0164 (3)1.2335 (4)0.8455 (4)0.0455 (9)
H8B1.03961.32860.84790.055*
H8A1.01971.20180.76380.055*
C90.8876 (3)1.3426 (3)0.9735 (3)0.0407 (8)
C100.7509 (3)1.4418 (4)1.0807 (5)0.0488 (10)
C110.7934 (4)1.4216 (6)1.2022 (4)0.0701 (13)
H11A0.79171.32461.22270.105*
H11B0.75761.47401.25940.105*
H11C0.85811.45341.20200.105*
C120.7647 (6)1.5884 (5)1.0332 (7)0.086 (2)
H12A0.83141.60921.02950.130*
H12B0.73381.65371.08490.130*
H12C0.73771.59500.95520.130*
C130.6482 (4)1.3957 (6)1.0791 (6)0.0723 (14)
H13A0.62231.40911.00110.108*
H13B0.61251.44971.13530.108*
H13C0.64441.29881.10000.108*
U11U22U33U12U13U23
Br10.0408 (2)0.0566 (2)0.0415 (2)−0.00053 (14)−0.0054 (2)−0.01174 (18)
Br20.0757 (3)0.0393 (2)0.0626 (3)0.01023 (16)−0.0059 (2)−0.0133 (2)
O10.0599 (18)0.0619 (19)0.079 (3)−0.0142 (15)0.0064 (16)−0.0333 (17)
O20.0436 (13)0.0401 (12)0.0451 (15)0.0075 (11)0.0017 (12)−0.0121 (11)
O30.0719 (19)0.0752 (19)0.0343 (17)−0.0037 (15)−0.0071 (14)0.0051 (16)
C10.0403 (17)0.0328 (15)0.0374 (19)0.0002 (13)0.0039 (17)−0.0032 (14)
C20.0355 (16)0.0375 (15)0.0347 (18)0.0076 (13)0.0050 (14)−0.0044 (14)
C30.0347 (17)0.0374 (14)0.0330 (17)−0.0026 (13)0.0021 (16)−0.0025 (15)
C40.0439 (18)0.0394 (15)0.038 (2)−0.0016 (14)0.0021 (17)−0.0007 (14)
C50.0402 (19)0.0435 (16)0.037 (2)0.0070 (16)−0.0026 (16)−0.0026 (16)
C60.0339 (19)0.057 (2)0.054 (3)0.0070 (16)−0.0030 (17)−0.0068 (19)
C70.0347 (17)0.060 (2)0.056 (3)−0.0034 (17)0.0025 (17)−0.0164 (19)
C80.044 (2)0.0453 (17)0.047 (2)−0.0076 (15)0.0098 (17)−0.0082 (15)
C90.050 (2)0.0352 (15)0.037 (2)0.0011 (15)0.0018 (16)−0.0017 (14)
C100.066 (2)0.0397 (17)0.040 (2)0.0135 (17)0.009 (2)−0.0088 (18)
C110.088 (3)0.082 (3)0.041 (3)−0.001 (3)0.006 (2)−0.006 (2)
C120.138 (5)0.038 (2)0.083 (4)0.026 (3)0.038 (4)0.002 (2)
C130.063 (3)0.076 (3)0.078 (4)0.019 (2)0.005 (3)−0.023 (3)
Br1—C31.956 (4)C6—H6A0.9700
Br2—C41.946 (4)C7—C81.528 (7)
O1—C91.206 (5)C7—H7B0.9700
O2—C91.328 (5)C7—H7A0.9700
O2—C101.486 (5)C8—H8B0.9700
O3—C51.217 (5)C8—H8A0.9700
C1—C21.334 (5)C10—C111.507 (7)
C1—C81.499 (5)C10—C131.511 (7)
C1—C91.508 (5)C10—C121.518 (7)
C2—C31.495 (5)C11—H11A0.9600
C2—H20.9300C11—H11B0.9600
C3—C41.526 (5)C11—H11C0.9600
C3—H30.9800C12—H12A0.9600
C4—C51.529 (6)C12—H12B0.9600
C4—H40.9800C12—H12C0.9600
C5—C61.498 (6)C13—H13A0.9600
C6—C71.543 (6)C13—H13B0.9600
C6—H6B0.9700C13—H13C0.9600
C9—O2—C10122.1 (3)C1—C8—C7112.6 (4)
C2—C1—C8125.0 (3)C1—C8—H8B109.1
C2—C1—C9119.5 (3)C7—C8—H8B109.1
C8—C1—C9115.4 (3)C1—C8—H8A109.1
C1—C2—C3123.9 (3)C7—C8—H8A109.1
C1—C2—H2118.1H8B—C8—H8A107.8
C3—C2—H2118.1O1—C9—O2125.9 (3)
C2—C3—C4108.0 (3)O1—C9—C1122.2 (3)
C2—C3—Br1109.3 (2)O2—C9—C1111.9 (3)
C4—C3—Br1110.8 (2)O2—C10—C11109.7 (4)
C2—C3—H3109.6O2—C10—C13101.7 (4)
C4—C3—H3109.6C11—C10—C13110.7 (5)
Br1—C3—H3109.6O2—C10—C12108.3 (4)
C3—C4—C5110.8 (3)C11—C10—C12112.9 (5)
C3—C4—Br2111.9 (3)C13—C10—C12113.0 (5)
C5—C4—Br2106.8 (2)C10—C11—H11A109.5
C3—C4—H4109.1C10—C11—H11B109.5
C5—C4—H4109.1H11A—C11—H11B109.5
Br2—C4—H4109.1C10—C11—H11C109.5
O3—C5—C6122.5 (4)H11A—C11—H11C109.5
O3—C5—C4118.6 (4)H11B—C11—H11C109.5
C6—C5—C4118.9 (3)C10—C12—H12A109.5
C5—C6—C7113.9 (3)C10—C12—H12B109.5
C5—C6—H6B108.8H12A—C12—H12B109.5
C7—C6—H6B108.8C10—C12—H12C109.5
C5—C6—H6A108.8H12A—C12—H12C109.5
C7—C6—H6A108.8H12B—C12—H12C109.5
H6B—C6—H6A107.7C10—C13—H13A109.5
C8—C7—C6114.1 (4)C10—C13—H13B109.5
C8—C7—H7B108.7H13A—C13—H13B109.5
C6—C7—H7B108.7C10—C13—H13C109.5
C8—C7—H7A108.7H13A—C13—H13C109.5
C6—C7—H7A108.7H13B—C13—H13C109.5
H7B—C7—H7A107.6
D—H···AD—HH···AD···AD—H···A
C3—H3···O3i0.982.573.525 (5)165.
C8—H8A···O3i0.972.633.590 (6)172.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O3i0.982.573.525 (5)165
C8—H8A⋯O3i0.972.633.590 (6)172

Symmetry code: (i) .

  2 in total

Review 1.  The chemistry of 2-aminocycloalkanecarboxylic acids.

Authors:  F Fülöp
Journal:  Chem Rev       Date:  2001-07       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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