| Literature DB >> 22259514 |
Magda Blanco, Narciso M Garrido, Francisca Sanz, David Diez.
Abstract
The title compound, C(13)H(18)Br(2)O(3), was prepared by a bromination reaction of (1E,3Z)-methyl 5-oxocyclo-octa-1,3-diene-carboxyl-ate, which was obtained by an ep-oxy-dation reaction of tert-butyl cyclo-oct-1,3-diene-carboxyl-ate. The crystal structure confirms unequivocally the absolute configuration of both chiral centres to be S. In the crystal, C-H⋯O inter-actions link the mol-ecules into chains running along the c axis.Entities:
Year: 2011 PMID: 22259514 PMCID: PMC3254564 DOI: 10.1107/S1600536811053852
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H18Br2O3 | |
| Orthorhombic, | Cu |
| Hall symbol: P 2c -2ac | Cell parameters from 9578 reflections |
| θ = 4.6–66.5° | |
| µ = 6.76 mm−1 | |
| Prismatic, colourless | |
| 0.24 × 0.14 × 0.10 mm |
| Bruker APEXII CCD area-detector diffractometer | 2170 independent reflections |
| Radiation source: fine-focus sealed tube | 2153 reflections with |
| graphite | |
| phi and ω scans | θmax = 66.5°, θmin = 4.6° |
| Absorption correction: multi-scan ( | |
| 10215 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2170 reflections | Δρmax = 0.32 e Å−3 |
| 166 parameters | Δρmin = −0.46 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 803 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.06 (3) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.76354 (2) | 0.96781 (4) | 0.67951 (5) | 0.04630 (14) | |
| Br2 | 0.94176 (3) | 0.72748 (4) | 0.77399 (5) | 0.05922 (16) | |
| O1 | 0.9457 (2) | 1.4186 (4) | 1.0183 (4) | 0.0671 (10) | |
| O2 | 0.79492 (19) | 1.3427 (3) | 0.9957 (3) | 0.0429 (6) | |
| O3 | 0.9590 (2) | 0.9175 (4) | 1.0552 (3) | 0.0605 (8) | |
| C1 | 0.9148 (3) | 1.2311 (3) | 0.8856 (4) | 0.0368 (7) | |
| C2 | 0.8510 (2) | 1.1346 (3) | 0.8551 (3) | 0.0359 (7) | |
| H2 | 0.7890 | 1.1450 | 0.8824 | 0.043* | |
| C3 | 0.8733 (2) | 1.0108 (3) | 0.7796 (4) | 0.0350 (7) | |
| H3 | 0.9285 | 1.0313 | 0.7294 | 0.042* | |
| C4 | 0.8964 (3) | 0.8890 (4) | 0.8617 (3) | 0.0403 (7) | |
| H4 | 0.8391 | 0.8632 | 0.9060 | 0.048* | |
| C5 | 0.9749 (3) | 0.9286 (4) | 0.9494 (4) | 0.0403 (8) | |
| C6 | 1.0669 (3) | 0.9841 (5) | 0.9021 (4) | 0.0481 (10) | |
| H6B | 1.0700 | 0.9652 | 0.8176 | 0.058* | |
| H6A | 1.1189 | 0.9347 | 0.9398 | 0.058* | |
| C7 | 1.0806 (3) | 1.1419 (5) | 0.9221 (5) | 0.0503 (10) | |
| H7B | 1.0685 | 1.1627 | 1.0050 | 0.060* | |
| H7A | 1.1463 | 1.1655 | 0.9057 | 0.060* | |
| C8 | 1.0164 (3) | 1.2335 (4) | 0.8455 (4) | 0.0455 (9) | |
| H8B | 1.0396 | 1.3286 | 0.8479 | 0.055* | |
| H8A | 1.0197 | 1.2018 | 0.7638 | 0.055* | |
| C9 | 0.8876 (3) | 1.3426 (3) | 0.9735 (3) | 0.0407 (8) | |
| C10 | 0.7509 (3) | 1.4418 (4) | 1.0807 (5) | 0.0488 (10) | |
| C11 | 0.7934 (4) | 1.4216 (6) | 1.2022 (4) | 0.0701 (13) | |
| H11A | 0.7917 | 1.3246 | 1.2227 | 0.105* | |
| H11B | 0.7576 | 1.4740 | 1.2594 | 0.105* | |
| H11C | 0.8581 | 1.4534 | 1.2020 | 0.105* | |
| C12 | 0.7647 (6) | 1.5884 (5) | 1.0332 (7) | 0.086 (2) | |
| H12A | 0.8314 | 1.6092 | 1.0295 | 0.130* | |
| H12B | 0.7338 | 1.6537 | 1.0849 | 0.130* | |
| H12C | 0.7377 | 1.5950 | 0.9552 | 0.130* | |
| C13 | 0.6482 (4) | 1.3957 (6) | 1.0791 (6) | 0.0723 (14) | |
| H13A | 0.6223 | 1.4091 | 1.0011 | 0.108* | |
| H13B | 0.6125 | 1.4497 | 1.1353 | 0.108* | |
| H13C | 0.6444 | 1.2988 | 1.1000 | 0.108* |
| Br1 | 0.0408 (2) | 0.0566 (2) | 0.0415 (2) | −0.00053 (14) | −0.0054 (2) | −0.01174 (18) |
| Br2 | 0.0757 (3) | 0.0393 (2) | 0.0626 (3) | 0.01023 (16) | −0.0059 (2) | −0.0133 (2) |
| O1 | 0.0599 (18) | 0.0619 (19) | 0.079 (3) | −0.0142 (15) | 0.0064 (16) | −0.0333 (17) |
| O2 | 0.0436 (13) | 0.0401 (12) | 0.0451 (15) | 0.0075 (11) | 0.0017 (12) | −0.0121 (11) |
| O3 | 0.0719 (19) | 0.0752 (19) | 0.0343 (17) | −0.0037 (15) | −0.0071 (14) | 0.0051 (16) |
| C1 | 0.0403 (17) | 0.0328 (15) | 0.0374 (19) | 0.0002 (13) | 0.0039 (17) | −0.0032 (14) |
| C2 | 0.0355 (16) | 0.0375 (15) | 0.0347 (18) | 0.0076 (13) | 0.0050 (14) | −0.0044 (14) |
| C3 | 0.0347 (17) | 0.0374 (14) | 0.0330 (17) | −0.0026 (13) | 0.0021 (16) | −0.0025 (15) |
| C4 | 0.0439 (18) | 0.0394 (15) | 0.038 (2) | −0.0016 (14) | 0.0021 (17) | −0.0007 (14) |
| C5 | 0.0402 (19) | 0.0435 (16) | 0.037 (2) | 0.0070 (16) | −0.0026 (16) | −0.0026 (16) |
| C6 | 0.0339 (19) | 0.057 (2) | 0.054 (3) | 0.0070 (16) | −0.0030 (17) | −0.0068 (19) |
| C7 | 0.0347 (17) | 0.060 (2) | 0.056 (3) | −0.0034 (17) | 0.0025 (17) | −0.0164 (19) |
| C8 | 0.044 (2) | 0.0453 (17) | 0.047 (2) | −0.0076 (15) | 0.0098 (17) | −0.0082 (15) |
| C9 | 0.050 (2) | 0.0352 (15) | 0.037 (2) | 0.0011 (15) | 0.0018 (16) | −0.0017 (14) |
| C10 | 0.066 (2) | 0.0397 (17) | 0.040 (2) | 0.0135 (17) | 0.009 (2) | −0.0088 (18) |
| C11 | 0.088 (3) | 0.082 (3) | 0.041 (3) | −0.001 (3) | 0.006 (2) | −0.006 (2) |
| C12 | 0.138 (5) | 0.038 (2) | 0.083 (4) | 0.026 (3) | 0.038 (4) | 0.002 (2) |
| C13 | 0.063 (3) | 0.076 (3) | 0.078 (4) | 0.019 (2) | 0.005 (3) | −0.023 (3) |
| Br1—C3 | 1.956 (4) | C6—H6A | 0.9700 |
| Br2—C4 | 1.946 (4) | C7—C8 | 1.528 (7) |
| O1—C9 | 1.206 (5) | C7—H7B | 0.9700 |
| O2—C9 | 1.328 (5) | C7—H7A | 0.9700 |
| O2—C10 | 1.486 (5) | C8—H8B | 0.9700 |
| O3—C5 | 1.217 (5) | C8—H8A | 0.9700 |
| C1—C2 | 1.334 (5) | C10—C11 | 1.507 (7) |
| C1—C8 | 1.499 (5) | C10—C13 | 1.511 (7) |
| C1—C9 | 1.508 (5) | C10—C12 | 1.518 (7) |
| C2—C3 | 1.495 (5) | C11—H11A | 0.9600 |
| C2—H2 | 0.9300 | C11—H11B | 0.9600 |
| C3—C4 | 1.526 (5) | C11—H11C | 0.9600 |
| C3—H3 | 0.9800 | C12—H12A | 0.9600 |
| C4—C5 | 1.529 (6) | C12—H12B | 0.9600 |
| C4—H4 | 0.9800 | C12—H12C | 0.9600 |
| C5—C6 | 1.498 (6) | C13—H13A | 0.9600 |
| C6—C7 | 1.543 (6) | C13—H13B | 0.9600 |
| C6—H6B | 0.9700 | C13—H13C | 0.9600 |
| C9—O2—C10 | 122.1 (3) | C1—C8—C7 | 112.6 (4) |
| C2—C1—C8 | 125.0 (3) | C1—C8—H8B | 109.1 |
| C2—C1—C9 | 119.5 (3) | C7—C8—H8B | 109.1 |
| C8—C1—C9 | 115.4 (3) | C1—C8—H8A | 109.1 |
| C1—C2—C3 | 123.9 (3) | C7—C8—H8A | 109.1 |
| C1—C2—H2 | 118.1 | H8B—C8—H8A | 107.8 |
| C3—C2—H2 | 118.1 | O1—C9—O2 | 125.9 (3) |
| C2—C3—C4 | 108.0 (3) | O1—C9—C1 | 122.2 (3) |
| C2—C3—Br1 | 109.3 (2) | O2—C9—C1 | 111.9 (3) |
| C4—C3—Br1 | 110.8 (2) | O2—C10—C11 | 109.7 (4) |
| C2—C3—H3 | 109.6 | O2—C10—C13 | 101.7 (4) |
| C4—C3—H3 | 109.6 | C11—C10—C13 | 110.7 (5) |
| Br1—C3—H3 | 109.6 | O2—C10—C12 | 108.3 (4) |
| C3—C4—C5 | 110.8 (3) | C11—C10—C12 | 112.9 (5) |
| C3—C4—Br2 | 111.9 (3) | C13—C10—C12 | 113.0 (5) |
| C5—C4—Br2 | 106.8 (2) | C10—C11—H11A | 109.5 |
| C3—C4—H4 | 109.1 | C10—C11—H11B | 109.5 |
| C5—C4—H4 | 109.1 | H11A—C11—H11B | 109.5 |
| Br2—C4—H4 | 109.1 | C10—C11—H11C | 109.5 |
| O3—C5—C6 | 122.5 (4) | H11A—C11—H11C | 109.5 |
| O3—C5—C4 | 118.6 (4) | H11B—C11—H11C | 109.5 |
| C6—C5—C4 | 118.9 (3) | C10—C12—H12A | 109.5 |
| C5—C6—C7 | 113.9 (3) | C10—C12—H12B | 109.5 |
| C5—C6—H6B | 108.8 | H12A—C12—H12B | 109.5 |
| C7—C6—H6B | 108.8 | C10—C12—H12C | 109.5 |
| C5—C6—H6A | 108.8 | H12A—C12—H12C | 109.5 |
| C7—C6—H6A | 108.8 | H12B—C12—H12C | 109.5 |
| H6B—C6—H6A | 107.7 | C10—C13—H13A | 109.5 |
| C8—C7—C6 | 114.1 (4) | C10—C13—H13B | 109.5 |
| C8—C7—H7B | 108.7 | H13A—C13—H13B | 109.5 |
| C6—C7—H7B | 108.7 | C10—C13—H13C | 109.5 |
| C8—C7—H7A | 108.7 | H13A—C13—H13C | 109.5 |
| C6—C7—H7A | 108.7 | H13B—C13—H13C | 109.5 |
| H7B—C7—H7A | 107.6 |
| H··· | ||||
| C3—H3···O3i | 0.98 | 2.57 | 3.525 (5) | 165. |
| C8—H8A···O3i | 0.97 | 2.63 | 3.590 (6) | 172. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C3—H3⋯O3i | 0.98 | 2.57 | 3.525 (5) | 165 |
| C8—H8 | 0.97 | 2.63 | 3.590 (6) | 172 |
Symmetry code: (i) .