Literature DB >> 22259512

5-Carb-oxy-1,3-bis-(carb-oxy-meth-yl)-4-imidazolinium-4-carboxyl-ate.

You-Ming Zhang1, Jian-Jun Ming, Jian-Peng Dang, Wan-Qiang Zhang, Tai-Bao Wei.   

Abstract

The title compound, C(9)H(8)N(2)O(8), was obtained by the reaction of n class="Chemical">imidazole-4,5-dicarb-oxy-lic acid and 2-chloro-acetic acid. An intra-molecular O-H⋯O hydrogen bond occurs. The crystal packing is stabilized by intermolecular O-H⋯O and C-H⋯O hydrogen bonds, which link mol-ecules into a three-dimensional network.

Entities:  

Year:  2011        PMID: 22259512      PMCID: PMC3254562          DOI: 10.1107/S160053681105416X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is a potential polydentate ligand for the construction of metal-organic frameworks. For applications of n class="Chemical">metal-organic frameworks, see: Gao et al. (2005 ▶); Gurunatha et al. (2008 ▶); Wang et al. (2010 ▶); Zhang & Li (2010 ▶). For related structures, see: Chai et al. (2010 ▶); Liu et al. (2004 ▶); Lu et al. (2006 ▶).

Experimental

Crystal data

C9H8N2O8 M = 272.17 Orthorhombic, a = 8.986 (7) Å b = 7.041 (6) Å c = 33.68 (3) Å V = 2131 (3) Å3 Z = 8 Mo Kα radiation μ = 0.15 mm−1 T = 296 K 0.35 × 0.33 × 0.29 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.948, T max = 0.957 13878 measured reflections 2091 independent reflections 1750 reflections with I2s(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.109 S = 0.98 2091 reflections 185 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681105416X/rz2687sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681105416X/rz2687Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681105416X/rz2687Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H8N2O8Dx = 1.697 Mg m3
Mr = 272.17Melting point: 510 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 5190 reflections
a = 8.986 (7) Åθ = 2.4–27.8°
b = 7.041 (6) ŵ = 0.15 mm1
c = 33.68 (3) ÅT = 296 K
V = 2131 (3) Å3Block, red
Z = 80.35 × 0.33 × 0.29 mm
F(000) = 1120
Bruker APEXII CCD diffractometer2091 independent reflections
Radiation source: fine-focus sealed tube1750 reflections with I2s(I)
graphiteRint = 0.055
φ and ω scansθmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −11→11
Tmin = 0.948, Tmax = 0.957k = −8→8
13878 measured reflectionsl = −40→41
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0398P)2 + 2.3475P] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max < 0.001
2091 reflectionsΔρmax = 0.23 e Å3
185 parametersΔρmin = −0.19 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.065 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0333 (2)0.0455 (3)0.36566 (6)0.0294 (5)
H10.0683−0.07680.36100.035*
C2−0.0421 (2)0.3049 (3)0.39610 (6)0.0259 (5)
C3−0.0421 (2)0.3386 (3)0.35616 (6)0.0254 (5)
C40.0345 (2)0.1384 (3)0.29562 (6)0.0298 (5)
H4A−0.04530.19040.27960.036*
H4B0.04060.00300.29060.036*
C50.1801 (3)0.2329 (3)0.28505 (6)0.0347 (5)
C60.0369 (2)0.0165 (3)0.43809 (6)0.0309 (5)
H6A0.0273−0.11920.43380.037*
H6B−0.03390.05370.45840.037*
C70.1931 (3)0.0624 (3)0.45163 (6)0.0322 (5)
C8−0.0809 (2)0.5139 (3)0.33270 (6)0.0312 (5)
C9−0.0854 (2)0.4261 (3)0.43069 (6)0.0311 (5)
N10.00421 (19)0.1725 (2)0.33789 (5)0.0266 (4)
N20.00520 (19)0.1186 (2)0.40108 (5)0.0267 (4)
O1−0.0529 (2)0.5150 (2)0.29686 (4)0.0433 (5)
O2−0.1404 (2)0.6492 (2)0.35153 (5)0.0467 (5)
O3−0.1520 (2)0.5842 (2)0.42221 (5)0.0436 (5)
O4−0.0606 (2)0.3734 (2)0.46442 (4)0.0417 (4)
O50.2115 (2)0.2377 (3)0.24692 (5)0.0528 (6)
O60.2616 (2)0.2993 (3)0.30957 (5)0.0522 (5)
O70.28441 (18)0.1355 (3)0.43067 (5)0.0459 (5)
O80.2134 (2)0.0069 (3)0.48852 (5)0.0479 (5)
H2W0.149 (4)0.170 (5)0.2306 (9)0.075 (10)*
H1W0.306 (4)0.045 (5)0.4978 (10)0.082 (11)*
H3W−0.149 (4)0.617 (4)0.3891 (9)0.073 (9)*
U11U22U33U12U13U23
C10.0302 (11)0.0273 (11)0.0306 (11)0.0000 (9)0.0007 (9)−0.0047 (9)
C20.0233 (10)0.0260 (10)0.0285 (10)0.0003 (8)0.0004 (8)−0.0012 (8)
C30.0234 (10)0.0266 (10)0.0261 (10)0.0016 (8)0.0002 (8)−0.0027 (8)
C40.0333 (12)0.0328 (11)0.0234 (10)−0.0017 (10)0.0005 (8)−0.0077 (9)
C50.0314 (12)0.0384 (12)0.0343 (12)−0.0035 (10)0.0044 (9)−0.0126 (10)
C60.0355 (12)0.0286 (11)0.0286 (11)0.0000 (9)0.0000 (9)0.0057 (9)
C70.0398 (13)0.0273 (11)0.0294 (11)0.0014 (10)−0.0019 (10)−0.0004 (9)
C80.0317 (12)0.0322 (12)0.0296 (11)0.0003 (10)−0.0018 (9)0.0019 (9)
C90.0301 (11)0.0343 (12)0.0290 (11)−0.0012 (10)0.0036 (9)−0.0052 (9)
N10.0282 (9)0.0283 (9)0.0234 (9)−0.0004 (8)0.0012 (7)−0.0043 (7)
N20.0298 (9)0.0264 (9)0.0240 (8)0.0006 (8)0.0001 (7)−0.0002 (7)
O10.0579 (11)0.0434 (10)0.0286 (8)0.0069 (8)0.0023 (7)0.0058 (7)
O20.0662 (12)0.0343 (9)0.0397 (9)0.0182 (9)0.0040 (8)0.0020 (8)
O30.0539 (11)0.0401 (10)0.0368 (9)0.0166 (8)0.0043 (8)−0.0083 (7)
O40.0550 (11)0.0451 (10)0.0249 (8)0.0022 (9)0.0033 (7)−0.0049 (7)
O50.0522 (12)0.0692 (13)0.0370 (9)−0.0241 (10)0.0166 (8)−0.0153 (9)
O60.0413 (10)0.0652 (13)0.0501 (10)−0.0177 (9)−0.0020 (8)−0.0202 (9)
O70.0388 (10)0.0537 (11)0.0452 (10)−0.0106 (9)−0.0016 (8)0.0126 (9)
O80.0497 (11)0.0645 (12)0.0296 (9)−0.0099 (10)−0.0091 (8)0.0080 (8)
C1—N11.320 (3)C6—N21.467 (3)
C1—N21.324 (3)C6—C71.511 (3)
C1—H10.9300C6—H6A0.9700
C2—C31.366 (3)C6—H6B0.9700
C2—N21.389 (3)C7—O71.199 (3)
C2—C91.496 (3)C7—O81.316 (3)
C3—N11.385 (3)C8—O11.233 (3)
C3—C81.506 (3)C8—O21.263 (3)
C4—N11.469 (3)C9—O41.216 (3)
C4—C51.511 (3)C9—O31.295 (3)
C4—H4A0.9700O2—H3W1.29 (3)
C4—H4B0.9700O3—H3W1.14 (3)
C5—O61.199 (3)O5—H2W0.92 (3)
C5—O51.315 (3)O8—H1W0.93 (4)
N1—C1—N2109.72 (19)C7—C6—H6B109.8
N1—C1—H1125.1H6A—C6—H6B108.2
N2—C1—H1125.1O7—C7—O8126.1 (2)
C3—C2—N2106.45 (17)O7—C7—C6123.4 (2)
C3—C2—C9131.9 (2)O8—C7—C6110.53 (19)
N2—C2—C9121.62 (19)O1—C8—O2125.0 (2)
C2—C3—N1106.91 (18)O1—C8—C3118.1 (2)
C2—C3—C8131.23 (19)O2—C8—C3116.90 (19)
N1—C3—C8121.86 (18)O4—C9—O3123.6 (2)
N1—C4—C5108.45 (17)O4—C9—C2120.4 (2)
N1—C4—H4A110.0O3—C9—C2116.01 (19)
C5—C4—H4A110.0C1—N1—C3108.44 (18)
N1—C4—H4B110.0C1—N1—C4122.60 (18)
C5—C4—H4B110.0C3—N1—C4128.64 (17)
H4A—C4—H4B108.4C1—N2—C2108.46 (18)
O6—C5—O5122.1 (2)C1—N2—C6122.56 (19)
O6—C5—C4122.6 (2)C2—N2—C6128.68 (17)
O5—C5—C4115.28 (19)C8—O2—H3W112.5 (14)
N2—C6—C7109.38 (17)C9—O3—H3W112.0 (16)
N2—C6—H6A109.8C5—O5—H2W116 (2)
C7—C6—H6A109.8C7—O8—H1W111 (2)
N2—C6—H6B109.8
N2—C2—C3—N10.3 (2)N2—C1—N1—C31.4 (2)
C9—C2—C3—N1−177.8 (2)N2—C1—N1—C4175.52 (18)
N2—C2—C3—C8−179.3 (2)C2—C3—N1—C1−1.1 (2)
C9—C2—C3—C82.5 (4)C8—C3—N1—C1178.64 (18)
N1—C4—C5—O69.2 (3)C2—C3—N1—C4−174.69 (19)
N1—C4—C5—O5−170.7 (2)C8—C3—N1—C45.0 (3)
N2—C6—C7—O7−15.1 (3)C5—C4—N1—C1−98.9 (2)
N2—C6—C7—O8166.48 (18)C5—C4—N1—C374.0 (3)
C2—C3—C8—O1170.6 (2)N1—C1—N2—C2−1.2 (2)
N1—C3—C8—O1−9.0 (3)N1—C1—N2—C6−175.48 (18)
C2—C3—C8—O2−9.5 (3)C3—C2—N2—C10.5 (2)
N1—C3—C8—O2170.9 (2)C9—C2—N2—C1178.88 (18)
C3—C2—C9—O4−171.7 (2)C3—C2—N2—C6174.33 (19)
N2—C2—C9—O410.4 (3)C9—C2—N2—C6−7.3 (3)
C3—C2—C9—O39.6 (3)C7—C6—N2—C190.0 (2)
N2—C2—C9—O3−168.3 (2)C7—C6—N2—C2−83.1 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3W···O21.13 (3)1.29 (3)2.426 (3)177 (3)
C1—H1···O6i0.932.473.158 (3)131
C4—H4A···O5ii0.972.383.311 (3)160
C4—H4B···O6i0.972.373.046 (3)126
C6—H6A···O7i0.972.423.136 (4)130
C6—H6B···O8iii0.972.443.346 (3)154
O5—H2W···O1iv0.92 (3)1.67 (3)2.581 (3)170 (3)
O8—H1W···O4v0.93 (4)1.84 (4)2.710 (3)155 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3W⋯O21.13 (3)1.29 (3)2.426 (3)177 (3)
C1—H1⋯O6i0.932.473.158 (3)131
C4—H4A⋯O5ii0.972.383.311 (3)160
C4—H4B⋯O6i0.972.373.046 (3)126
C6—H6A⋯O7i0.972.423.136 (4)130
C6—H6B⋯O8iii0.972.443.346 (3)154
O5—H2W⋯O1iv0.92 (3)1.67 (3)2.581 (3)170 (3)
O8—H1W⋯O4v0.93 (4)1.84 (4)2.710 (3)155 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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