Literature DB >> 22259480

(E)-1-[2-(Methyl-sulfan-yl)phen-yl]-2-({(E)-2-[2-(methyl-sulfan-yl)phen-yl]hydrazinyl-idene}(nitro)-meth-yl)diazene.

Karel G von Eschwege, Fabian Muller, Eric C Hosten.   

Abstract

In the title compound, C(15)H(15)N(5)O(2)S(2), the phenyl rings make dihedral angles of 4.03 (4) and 9.77 (5)° with the plane defined by the central N-N-C-N-N atoms (r.m.s. deviation = 0.010 Å). The C-S-C-C torsion angles of the methyl-sulfanyl groups with their respective phenyl rings are -7.47 (13) and -72.07 (13)°. The shortest centroid-centroid distance of 3.707 Å occurs between the two π-systems N-N-C-N-N and the benzene ring in the diazene 1-position. The H atom bound to the N atom is involved in intra-molecular N-H⋯N and N-H⋯S contacts, while the nitro O atoms are involved in inter-molecular C-H⋯O contacts.

Entities:  

Year:  2011        PMID: 22259480      PMCID: PMC3254534          DOI: 10.1107/S1600536811054080

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemistry of dithizone, see: Irving (1977 ▶). For related structures, see: Laing (1977 ▶); Mito et al. (1997 ▶); Gilroy et al. (2008 ▶). For the synthesis of nitro­formazans, see: Pelkis et al. (1957 ▶). For DFT and electrochemistry studies of dithizone, see: von Eschwege & Swarts (2010 ▶); von Eschwege, Conradie & Kuhn (2011 ▶).

Experimental

Crystal data

C15H15N5O2S2 M = 361.44 Monoclinic, a = 4.7283 (2) Å b = 17.9791 (10) Å c = 19.3865 (8) Å β = 103.646 (2)° V = 1601.54 (13) Å3 Z = 4 Mo Kα radiation μ = 0.35 mm−1 T = 200 K 0.79 × 0.21 × 0.07 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.870, T max = 1.000 14965 measured reflections 3960 independent reflections 3301 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.086 S = 1.04 3960 reflections 219 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97, PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811054080/zq2147sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054080/zq2147Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811054080/zq2147Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H15N5O2S2F(000) = 752
Mr = 361.44Dx = 1.499 Mg m3
Monoclinic, P21/cMelting point: 417 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 4.7283 (2) ÅCell parameters from 8473 reflections
b = 17.9791 (10) Åθ = 2.3–28.3°
c = 19.3865 (8) ŵ = 0.35 mm1
β = 103.646 (2)°T = 200 K
V = 1601.54 (13) Å3Platelet, red
Z = 40.79 × 0.21 × 0.07 mm
Bruker APEXII CCD diffractometer3960 independent reflections
Radiation source: sealed tube3301 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 28.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −6→5
Tmin = 0.870, Tmax = 1.000k = −23→23
14965 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0396P)2 + 0.7279P] where P = (Fo2 + 2Fc2)/3
3960 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.33810 (7)−0.05295 (2)0.125542 (19)0.02859 (10)
S20.10204 (8)0.22354 (2)0.39420 (2)0.03395 (11)
O10.2660 (3)−0.13599 (7)0.23524 (7)0.0451 (3)
O20.6661 (3)−0.11093 (7)0.31138 (6)0.0419 (3)
N1−0.0436 (2)0.06137 (7)0.24775 (6)0.0261 (2)
N20.0632 (2)−0.00197 (7)0.23768 (6)0.0254 (2)
N30.4414 (3)0.00974 (7)0.34898 (6)0.0262 (2)
N40.3493 (3)0.07389 (7)0.36783 (6)0.0275 (3)
H40.20110.09660.33970.033*
N50.4207 (3)−0.09471 (7)0.27813 (6)0.0288 (3)
C1−0.6361 (3)−0.08689 (10)0.05684 (8)0.0368 (3)
H1A−0.8170−0.08390.07310.055*
H1B−0.5993−0.13870.04600.055*
H1C−0.6541−0.05650.01410.055*
C20.2794 (4)0.25326 (9)0.32603 (9)0.0364 (3)
H2A0.46600.27660.34810.055*
H2B0.15530.28920.29480.055*
H2C0.31320.21010.29820.055*
C30.3021 (3)−0.02142 (8)0.29019 (7)0.0244 (3)
C11−0.2889 (3)0.08284 (8)0.19544 (7)0.0242 (3)
C12−0.4468 (3)0.03812 (8)0.13894 (7)0.0241 (3)
C13−0.6941 (3)0.07045 (9)0.09478 (8)0.0292 (3)
H13−0.80710.04200.05690.035*
C14−0.7781 (3)0.14243 (9)0.10470 (8)0.0326 (3)
H14−0.94750.16230.07370.039*
C15−0.6196 (3)0.18619 (9)0.15909 (8)0.0321 (3)
H15−0.67560.23610.16500.039*
C16−0.3795 (3)0.15564 (8)0.20428 (8)0.0292 (3)
H16−0.27210.18470.24250.035*
C210.4883 (3)0.10600 (8)0.43295 (7)0.0259 (3)
C220.3908 (3)0.17503 (8)0.45127 (7)0.0264 (3)
C230.5239 (3)0.20576 (9)0.51675 (8)0.0328 (3)
H230.45800.25230.53010.039*
C240.7501 (4)0.16978 (10)0.56265 (8)0.0364 (3)
H240.83790.19130.60730.044*
C250.8481 (4)0.10248 (10)0.54336 (9)0.0400 (4)
H251.00570.07800.57460.048*
C260.7182 (4)0.07032 (9)0.47872 (8)0.0371 (4)
H260.78630.02390.46570.045*
U11U22U33U12U13U23
S10.02626 (18)0.02805 (19)0.02859 (18)−0.00116 (13)0.00074 (13)−0.00361 (13)
S20.02892 (19)0.0374 (2)0.0351 (2)0.01037 (15)0.00660 (14)−0.00065 (15)
O10.0362 (6)0.0348 (6)0.0586 (8)−0.0037 (5)−0.0001 (5)−0.0214 (6)
O20.0419 (6)0.0366 (6)0.0381 (6)0.0139 (5)−0.0090 (5)−0.0063 (5)
N10.0245 (6)0.0282 (6)0.0231 (5)−0.0008 (4)0.0008 (4)0.0003 (5)
N20.0238 (5)0.0268 (6)0.0234 (5)−0.0031 (4)0.0017 (4)0.0001 (4)
N30.0288 (6)0.0227 (6)0.0240 (5)0.0000 (4)0.0003 (4)−0.0006 (4)
N40.0288 (6)0.0243 (6)0.0244 (6)0.0029 (5)−0.0037 (4)−0.0018 (5)
N50.0322 (6)0.0251 (6)0.0273 (6)−0.0010 (5)0.0034 (5)−0.0023 (5)
C10.0343 (8)0.0377 (9)0.0340 (8)−0.0035 (6)−0.0008 (6)−0.0093 (7)
C20.0401 (8)0.0297 (8)0.0382 (8)0.0071 (6)0.0068 (7)0.0080 (6)
C30.0261 (6)0.0221 (7)0.0235 (6)−0.0010 (5)0.0024 (5)−0.0001 (5)
C110.0214 (6)0.0281 (7)0.0217 (6)−0.0020 (5)0.0026 (5)0.0018 (5)
C120.0225 (6)0.0274 (7)0.0223 (6)−0.0025 (5)0.0052 (5)0.0011 (5)
C130.0251 (7)0.0344 (8)0.0249 (6)−0.0026 (5)−0.0003 (5)0.0013 (6)
C140.0286 (7)0.0358 (8)0.0302 (7)0.0039 (6)0.0006 (5)0.0066 (6)
C150.0333 (8)0.0290 (8)0.0330 (7)0.0043 (6)0.0056 (6)0.0028 (6)
C160.0294 (7)0.0298 (8)0.0266 (6)−0.0012 (6)0.0032 (5)−0.0025 (6)
C210.0263 (7)0.0252 (7)0.0235 (6)−0.0021 (5)0.0003 (5)−0.0014 (5)
C220.0265 (7)0.0278 (7)0.0248 (6)−0.0009 (5)0.0057 (5)−0.0001 (5)
C230.0393 (8)0.0304 (8)0.0295 (7)−0.0020 (6)0.0098 (6)−0.0060 (6)
C240.0430 (9)0.0376 (9)0.0248 (7)−0.0078 (7)0.0002 (6)−0.0059 (6)
C250.0422 (9)0.0386 (9)0.0303 (7)0.0031 (7)−0.0090 (6)−0.0022 (7)
C260.0413 (8)0.0301 (8)0.0316 (8)0.0070 (6)−0.0080 (6)−0.0051 (6)
S1—C121.7538 (15)C11—C161.400 (2)
S1—C11.8018 (15)C11—C121.4205 (18)
S2—C221.7710 (14)C12—C131.4018 (19)
S2—C21.8050 (17)C13—C141.381 (2)
O1—N51.2208 (16)C13—H130.9500
O2—N51.2226 (16)C14—C151.385 (2)
N1—N21.2793 (17)C14—H140.9500
N1—C111.4028 (17)C15—C161.374 (2)
N2—C31.3754 (17)C15—H150.9500
N3—C31.3009 (17)C16—H160.9500
N3—N41.3148 (17)C21—C261.387 (2)
N4—C211.4029 (17)C21—C221.399 (2)
N4—H40.8800C22—C231.391 (2)
N5—C31.4720 (18)C23—C241.380 (2)
C1—H1A0.9800C23—H230.9500
C1—H1B0.9800C24—C251.379 (2)
C1—H1C0.9800C24—H240.9500
C2—H2A0.9800C25—C261.385 (2)
C2—H2B0.9800C25—H250.9500
C2—H2C0.9800C26—H260.9500
C12—S1—C1102.72 (7)C11—C12—S1121.56 (10)
C22—S2—C2100.39 (7)C14—C13—C12121.98 (13)
N2—N1—C11115.05 (11)C14—C13—H13119.0
N1—N2—C3113.46 (11)C12—C13—H13119.0
C3—N3—N4119.26 (12)C13—C14—C15121.09 (14)
N3—N4—C21119.70 (11)C13—C14—H14119.5
N3—N4—H4120.1C15—C14—H14119.5
C21—N4—H4120.1C16—C15—C14118.39 (14)
O1—N5—O2123.76 (13)C16—C15—H15120.8
O1—N5—C3117.59 (12)C14—C15—H15120.8
O2—N5—C3118.65 (11)C15—C16—C11121.74 (13)
S1—C1—H1A109.5C15—C16—H16119.1
S1—C1—H1B109.5C11—C16—H16119.1
H1A—C1—H1B109.5C26—C21—C22120.22 (13)
S1—C1—H1C109.5C26—C21—N4121.02 (13)
H1A—C1—H1C109.5C22—C21—N4118.76 (12)
H1B—C1—H1C109.5C23—C22—C21118.61 (13)
S2—C2—H2A109.5C23—C22—S2119.38 (12)
S2—C2—H2B109.5C21—C22—S2122.01 (10)
H2A—C2—H2B109.5C24—C23—C22121.13 (14)
S2—C2—H2C109.5C24—C23—H23119.4
H2A—C2—H2C109.5C22—C23—H23119.4
H2B—C2—H2C109.5C25—C24—C23119.69 (14)
N3—C3—N2134.15 (13)C25—C24—H24120.2
N3—C3—N5113.05 (11)C23—C24—H24120.2
N2—C3—N5112.77 (11)C24—C25—C26120.40 (15)
C16—C11—N1113.16 (12)C24—C25—H25119.8
C16—C11—C12120.20 (12)C26—C25—H25119.8
N1—C11—C12126.61 (13)C25—C26—C21119.93 (15)
C13—C12—C11116.57 (13)C25—C26—H26120.0
C13—C12—S1121.87 (11)C21—C26—H26120.0
C11—N1—N2—C3−179.60 (11)C12—C13—C14—C150.2 (2)
C3—N3—N4—C21176.56 (13)C13—C14—C15—C16−1.6 (2)
N4—N3—C3—N21.0 (2)C14—C15—C16—C111.6 (2)
N4—N3—C3—N5−176.84 (12)N1—C11—C16—C15−178.69 (13)
N1—N2—C3—N31.7 (2)C12—C11—C16—C15−0.4 (2)
N1—N2—C3—N5179.48 (11)N3—N4—C21—C26−1.4 (2)
O1—N5—C3—N3161.94 (13)N3—N4—C21—C22178.64 (13)
O2—N5—C3—N3−17.90 (19)C26—C21—C22—C23−1.7 (2)
O1—N5—C3—N2−16.36 (18)N4—C21—C22—C23178.25 (13)
O2—N5—C3—N2163.80 (13)C26—C21—C22—S2179.03 (12)
N2—N1—C11—C16−173.42 (12)N4—C21—C22—S2−1.06 (19)
N2—N1—C11—C128.4 (2)C2—S2—C22—C23108.63 (13)
C16—C11—C12—C13−0.93 (19)C2—S2—C22—C21−72.07 (13)
N1—C11—C12—C13177.12 (13)C21—C22—C23—C240.8 (2)
C16—C11—C12—S1179.31 (11)S2—C22—C23—C24−179.83 (12)
N1—C11—C12—S1−2.65 (19)C22—C23—C24—C250.5 (2)
C1—S1—C12—C13−7.47 (13)C23—C24—C25—C26−0.9 (3)
C1—S1—C12—C11172.28 (12)C24—C25—C26—C210.1 (3)
C11—C12—C13—C141.0 (2)C22—C21—C26—C251.2 (2)
S1—C12—C13—C14−179.22 (11)N4—C21—C26—C25−178.72 (15)
D—H···AD—HH···AD···AD—H···A
N4—H4···S20.882.603.0248 (13)110.
N4—H4···N10.881.992.6229 (16)128.
C2—H2B···O1i0.982.363.253 (2)151.
C25—H25···O2ii0.952.453.1901 (19)134.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯S20.882.603.0248 (13)110
N4—H4⋯N10.881.992.6229 (16)128
C2—H2B⋯O1i0.982.363.253 (2)151
C25—H25⋯O2ii0.952.453.1901 (19)134

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Dithizone and its oxidation products: a DFT, spectroscopic, and X-ray structural study.

Authors:  Karel G von Eschwege; Jeanet Conradie; Annemarie Kuhn
Journal:  J Phys Chem A       Date:  2011-12-07       Impact factor: 2.781

3.  Synthesis and characterization of 3-cyano- and 3-nitroformazans, nitrogen-rich analogues of beta-diketimine ligands.

Authors:  Joe B Gilroy; Peter O Otieno; Michael J Ferguson; Robert McDonald; Robin G Hicks
Journal:  Inorg Chem       Date:  2008-01-25       Impact factor: 5.165

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  1-(2-Meth-oxy-phen-yl)-2-{[2-(2-meth-oxy-phen-yl)hydrazinyl-idene](nitro)-meth-yl}diazene.

Authors:  Karel G von Eschwege; Fabian Muller; Tania N Hill
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-04
  1 in total

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