| Literature DB >> 22259468 |
Halema Shaban Abduelftah, Amna Qasem Ali, Naser Eltaher Eltayeb, Siang Guan Teoh, Hoong-Kun Fun.
Abstract
In the title compound, C(6)H(12)N(4)OS, an intra-molecular N-H⋯N hydrogen-bond is present giving rise to an S(5) ring motif. In the crystal, double-stranded chains propagating along [10[Formula: see text]] are formed via pairs of O-H⋯S and N-H⋯S hydrogen bonds. The chains are further stabilized by C-H⋯S interactions.Entities:
Year: 2011 PMID: 22259468 PMCID: PMC3254522 DOI: 10.1107/S1600536811053621
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H12N4OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point = 487.5–490 K |
| Mo | |
| Cell parameters from 7387 reflections | |
| θ = 2.4–32.7° | |
| α = 79.750 (1)° | µ = 0.32 mm−1 |
| β = 89.509 (1)° | |
| γ = 85.083 (1)° | Plate, colourless |
| 0.51 × 0.25 × 0.07 mm |
| Bruker APEXII CCD diffractometer | 3256 independent reflections |
| Radiation source: fine-focus sealed tube | 2920 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.7°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 12035 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3256 reflections | (Δ/σ)max = 0.001 |
| 124 parameters | Δρmax = 0.40 e Å−3 |
| 0 restraints | Δρmin = −0.39 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.94334 (4) | 0.16073 (3) | 0.30007 (2) | 0.01590 (7) | |
| O1 | −0.03857 (14) | 0.29827 (9) | 0.95645 (8) | 0.02032 (15) | |
| N1 | 0.16712 (15) | 0.21630 (10) | 0.90822 (9) | 0.01569 (15) | |
| N2 | 0.44402 (14) | 0.22893 (9) | 0.57941 (8) | 0.01351 (14) | |
| N3 | 0.64505 (15) | 0.16555 (10) | 0.51705 (8) | 0.01452 (15) | |
| N4 | 0.51169 (15) | 0.32555 (10) | 0.31045 (8) | 0.01554 (15) | |
| C1 | 0.02246 (18) | 0.37515 (12) | 0.67902 (10) | 0.01835 (18) | |
| H1A | −0.1458 | 0.3575 | 0.7064 | 0.028* | |
| H1B | 0.0464 | 0.3628 | 0.5798 | 0.028* | |
| H1C | 0.0556 | 0.4825 | 0.6895 | 0.028* | |
| C2 | 0.19230 (17) | 0.25693 (11) | 0.77265 (10) | 0.01371 (16) | |
| C3 | 0.40835 (17) | 0.17983 (11) | 0.71298 (10) | 0.01444 (16) | |
| C4 | 0.5672 (2) | 0.05499 (14) | 0.80647 (11) | 0.0258 (2) | |
| H4A | 0.6119 | −0.0328 | 0.7560 | 0.039* | |
| H4B | 0.4791 | 0.0158 | 0.8932 | 0.039* | |
| H4C | 0.7146 | 0.1001 | 0.8314 | 0.039* | |
| C5 | 0.68449 (17) | 0.22272 (10) | 0.37711 (9) | 0.01296 (15) | |
| C6 | 0.51377 (18) | 0.39340 (12) | 0.15976 (10) | 0.01718 (18) | |
| H6A | 0.3703 | 0.4686 | 0.1362 | 0.026* | |
| H6B | 0.5111 | 0.3086 | 0.1038 | 0.026* | |
| H6C | 0.6612 | 0.4486 | 0.1379 | 0.026* | |
| H1N3 | 0.754 (3) | 0.0948 (18) | 0.5626 (16) | 0.025 (4)* | |
| H1N4 | 0.387 (3) | 0.3399 (18) | 0.3605 (17) | 0.026 (4)* | |
| H1O1 | −0.040 (3) | 0.263 (2) | 1.046 (2) | 0.039 (4)* |
| S1 | 0.01340 (11) | 0.02020 (11) | 0.01157 (10) | 0.00444 (8) | 0.00346 (7) | 0.00102 (7) |
| O1 | 0.0191 (3) | 0.0277 (4) | 0.0116 (3) | 0.0092 (3) | 0.0044 (3) | −0.0022 (3) |
| N1 | 0.0146 (4) | 0.0190 (3) | 0.0124 (3) | 0.0039 (3) | 0.0031 (3) | −0.0025 (3) |
| N2 | 0.0128 (3) | 0.0160 (3) | 0.0112 (3) | 0.0009 (3) | 0.0029 (3) | −0.0020 (3) |
| N3 | 0.0135 (3) | 0.0179 (3) | 0.0102 (3) | 0.0041 (3) | 0.0024 (3) | 0.0002 (3) |
| N4 | 0.0135 (4) | 0.0203 (4) | 0.0103 (3) | 0.0044 (3) | 0.0026 (3) | 0.0012 (3) |
| C1 | 0.0175 (4) | 0.0223 (4) | 0.0126 (4) | 0.0057 (3) | 0.0007 (3) | 0.0005 (3) |
| C2 | 0.0134 (4) | 0.0154 (4) | 0.0113 (4) | 0.0017 (3) | 0.0009 (3) | −0.0013 (3) |
| C3 | 0.0151 (4) | 0.0161 (4) | 0.0107 (4) | 0.0028 (3) | 0.0019 (3) | −0.0006 (3) |
| C4 | 0.0265 (5) | 0.0314 (5) | 0.0129 (4) | 0.0159 (4) | 0.0054 (4) | 0.0048 (4) |
| C5 | 0.0129 (4) | 0.0145 (4) | 0.0108 (4) | 0.0004 (3) | 0.0014 (3) | −0.0014 (3) |
| C6 | 0.0180 (4) | 0.0202 (4) | 0.0106 (4) | 0.0046 (3) | 0.0013 (3) | 0.0017 (3) |
| S1—C5 | 1.6914 (9) | C1—H1A | 0.9800 |
| O1—N1 | 1.4034 (10) | C1—H1B | 0.9800 |
| O1—H1O1 | 0.858 (19) | C1—H1C | 0.9800 |
| N1—C2 | 1.2911 (12) | C2—C3 | 1.4752 (13) |
| N2—C3 | 1.2912 (12) | C3—C4 | 1.4944 (13) |
| N2—N3 | 1.3733 (11) | C4—H4A | 0.9800 |
| N3—C5 | 1.3639 (12) | C4—H4B | 0.9800 |
| N3—H1N3 | 0.876 (15) | C4—H4C | 0.9800 |
| N4—C5 | 1.3285 (12) | C6—H6A | 0.9800 |
| N4—C6 | 1.4560 (12) | C6—H6B | 0.9800 |
| N4—H1N4 | 0.847 (16) | C6—H6C | 0.9800 |
| C1—C2 | 1.4977 (13) | ||
| N1—O1—H1O1 | 104.1 (12) | N2—C3—C2 | 115.15 (8) |
| C2—N1—O1 | 111.22 (8) | N2—C3—C4 | 125.00 (9) |
| C3—N2—N3 | 118.54 (8) | C2—C3—C4 | 119.84 (8) |
| C5—N3—N2 | 117.75 (8) | C3—C4—H4A | 109.5 |
| C5—N3—H1N3 | 118.0 (10) | C3—C4—H4B | 109.5 |
| N2—N3—H1N3 | 124.1 (10) | H4A—C4—H4B | 109.5 |
| C5—N4—C6 | 124.53 (8) | C3—C4—H4C | 109.5 |
| C5—N4—H1N4 | 114.1 (11) | H4A—C4—H4C | 109.5 |
| C6—N4—H1N4 | 120.9 (11) | H4B—C4—H4C | 109.5 |
| C2—C1—H1A | 109.5 | N4—C5—N3 | 116.23 (8) |
| C2—C1—H1B | 109.5 | N4—C5—S1 | 124.44 (7) |
| H1A—C1—H1B | 109.5 | N3—C5—S1 | 119.33 (7) |
| C2—C1—H1C | 109.5 | N4—C6—H6A | 109.5 |
| H1A—C1—H1C | 109.5 | N4—C6—H6B | 109.5 |
| H1B—C1—H1C | 109.5 | H6A—C6—H6B | 109.5 |
| N1—C2—C3 | 115.02 (8) | N4—C6—H6C | 109.5 |
| N1—C2—C1 | 124.30 (8) | H6A—C6—H6C | 109.5 |
| C3—C2—C1 | 120.68 (8) | H6B—C6—H6C | 109.5 |
| C3—N2—N3—C5 | −177.76 (8) | N1—C2—C3—C4 | 4.82 (14) |
| O1—N1—C2—C3 | 178.35 (8) | C1—C2—C3—C4 | −176.26 (10) |
| O1—N1—C2—C1 | −0.52 (13) | C6—N4—C5—N3 | −176.61 (9) |
| N3—N2—C3—C2 | 178.38 (8) | C6—N4—C5—S1 | 3.43 (14) |
| N3—N2—C3—C4 | −1.47 (15) | N2—N3—C5—N4 | −5.71 (13) |
| N1—C2—C3—N2 | −175.03 (9) | N2—N3—C5—S1 | 174.25 (6) |
| C1—C2—C3—N2 | 3.88 (13) |
| H··· | ||||
| N3—H1N3···S1i | 0.877 (16) | 2.781 (16) | 3.6519 (9) | 172.0 (14) |
| N4—H1N4···N2 | 0.848 (16) | 2.155 (16) | 2.5932 (11) | 111.9 (13) |
| O1—H1O1···S1ii | 0.857 (19) | 2.437 (19) | 3.2930 (8) | 178.3 (17) |
| C1—H1B···N2 | 0.98 | 2.39 | 2.7919 (13) | 104 |
| C4—H4A···S1i | 0.98 | 2.69 | 3.3991 (12) | 129 |
| C4—H4B···N1 | 0.98 | 2.35 | 2.7698 (14) | 105 |
| C4—H4C···O1iii | 0.98 | 2.71 | 3.6173 (16) | 154 |
| C6—H6A···O1iv | 0.98 | 2.63 | 3.6011 (12) | 170 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H1 | 0.877 (16) | 2.781 (16) | 3.6519 (9) | 172.0 (14) |
| N4—H1 | 0.848 (16) | 2.155 (16) | 2.5932 (11) | 111.9 (13) |
| O1—H1 | 0.857 (19) | 2.437 (19) | 3.2930 (8) | 178.3 (17) |
| C4—H4 | 0.98 | 2.69 | 3.3991 (12) | 129 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .