Literature DB >> 22259468

(E)-2-[(E)-3-(Hy-droxy-imino)-butan-2-yl-idene]-N-methyl-hydrazinecarbothio-amide.

Halema Shaban Abduelftah, Amna Qasem Ali, Naser Eltaher Eltayeb, Siang Guan Teoh, Hoong-Kun Fun.   

Abstract

In the title compound, C(6)H(12)N(4)OS, an intra-molecular N-H⋯N hydrogen-bond is present giving rise to an S(5) ring motif. In the crystal, double-stranded chains propagating along [10[Formula: see text]] are formed via pairs of O-H⋯S and N-H⋯S hydrogen bonds. The chains are further stabilized by C-H⋯S interactions.

Entities:  

Year:  2011        PMID: 22259468      PMCID: PMC3254522          DOI: 10.1107/S1600536811053621

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For standard bond lengths, see: Allen et al. (1987 ▶). For graph-set analysis of hydrogen bonds, see: Bernstein et al. (1995 ▶). For related structures, see: Choi et al. (2008 ▶). For the biological activity and pharmacological properties of thio­semi­carb­azones and their metal complexes, see: Cowley et al. (2002 ▶); Ming (2003 ▶); Lobana et al. (2004 ▶, 2007 ▶).

Experimental

Crystal data

C6H12N4OS M = 188.26 Triclinic, a = 5.5205 (1) Å b = 8.6077 (2) Å c = 9.5650 (2) Å α = 79.750 (1)° β = 89.509 (1)° γ = 85.083 (1)° V = 445.61 (2) Å3 Z = 2 Mo Kα radiation μ = 0.32 mm−1 T = 100 K 0.51 × 0.25 × 0.07 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.854, T max = 0.978 12035 measured reflections 3256 independent reflections 2920 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.081 S = 1.08 3256 reflections 124 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811053621/mw2038sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053621/mw2038Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811053621/mw2038Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H12N4OSZ = 2
Mr = 188.26F(000) = 200
Triclinic, P1Dx = 1.403 Mg m3
Hall symbol: -P 1Melting point = 487.5–490 K
a = 5.5205 (1) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.6077 (2) ÅCell parameters from 7387 reflections
c = 9.5650 (2) Åθ = 2.4–32.7°
α = 79.750 (1)°µ = 0.32 mm1
β = 89.509 (1)°T = 100 K
γ = 85.083 (1)°Plate, colourless
V = 445.61 (2) Å30.51 × 0.25 × 0.07 mm
Bruker APEXII CCD diffractometer3256 independent reflections
Radiation source: fine-focus sealed tube2920 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 32.7°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.854, Tmax = 0.978k = −13→13
12035 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0347P)2 + 0.1679P] where P = (Fo2 + 2Fc2)/3
3256 reflections(Δ/σ)max = 0.001
124 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.94334 (4)0.16073 (3)0.30007 (2)0.01590 (7)
O1−0.03857 (14)0.29827 (9)0.95645 (8)0.02032 (15)
N10.16712 (15)0.21630 (10)0.90822 (9)0.01569 (15)
N20.44402 (14)0.22893 (9)0.57941 (8)0.01351 (14)
N30.64505 (15)0.16555 (10)0.51705 (8)0.01452 (15)
N40.51169 (15)0.32555 (10)0.31045 (8)0.01554 (15)
C10.02246 (18)0.37515 (12)0.67902 (10)0.01835 (18)
H1A−0.14580.35750.70640.028*
H1B0.04640.36280.57980.028*
H1C0.05560.48250.68950.028*
C20.19230 (17)0.25693 (11)0.77265 (10)0.01371 (16)
C30.40835 (17)0.17983 (11)0.71298 (10)0.01444 (16)
C40.5672 (2)0.05499 (14)0.80647 (11)0.0258 (2)
H4A0.6119−0.03280.75600.039*
H4B0.47910.01580.89320.039*
H4C0.71460.10010.83140.039*
C50.68449 (17)0.22272 (10)0.37711 (9)0.01296 (15)
C60.51377 (18)0.39340 (12)0.15976 (10)0.01718 (18)
H6A0.37030.46860.13620.026*
H6B0.51110.30860.10380.026*
H6C0.66120.44860.13790.026*
H1N30.754 (3)0.0948 (18)0.5626 (16)0.025 (4)*
H1N40.387 (3)0.3399 (18)0.3605 (17)0.026 (4)*
H1O1−0.040 (3)0.263 (2)1.046 (2)0.039 (4)*
U11U22U33U12U13U23
S10.01340 (11)0.02020 (11)0.01157 (10)0.00444 (8)0.00346 (7)0.00102 (7)
O10.0191 (3)0.0277 (4)0.0116 (3)0.0092 (3)0.0044 (3)−0.0022 (3)
N10.0146 (4)0.0190 (3)0.0124 (3)0.0039 (3)0.0031 (3)−0.0025 (3)
N20.0128 (3)0.0160 (3)0.0112 (3)0.0009 (3)0.0029 (3)−0.0020 (3)
N30.0135 (3)0.0179 (3)0.0102 (3)0.0041 (3)0.0024 (3)0.0002 (3)
N40.0135 (4)0.0203 (4)0.0103 (3)0.0044 (3)0.0026 (3)0.0012 (3)
C10.0175 (4)0.0223 (4)0.0126 (4)0.0057 (3)0.0007 (3)0.0005 (3)
C20.0134 (4)0.0154 (4)0.0113 (4)0.0017 (3)0.0009 (3)−0.0013 (3)
C30.0151 (4)0.0161 (4)0.0107 (4)0.0028 (3)0.0019 (3)−0.0006 (3)
C40.0265 (5)0.0314 (5)0.0129 (4)0.0159 (4)0.0054 (4)0.0048 (4)
C50.0129 (4)0.0145 (4)0.0108 (4)0.0004 (3)0.0014 (3)−0.0014 (3)
C60.0180 (4)0.0202 (4)0.0106 (4)0.0046 (3)0.0013 (3)0.0017 (3)
S1—C51.6914 (9)C1—H1A0.9800
O1—N11.4034 (10)C1—H1B0.9800
O1—H1O10.858 (19)C1—H1C0.9800
N1—C21.2911 (12)C2—C31.4752 (13)
N2—C31.2912 (12)C3—C41.4944 (13)
N2—N31.3733 (11)C4—H4A0.9800
N3—C51.3639 (12)C4—H4B0.9800
N3—H1N30.876 (15)C4—H4C0.9800
N4—C51.3285 (12)C6—H6A0.9800
N4—C61.4560 (12)C6—H6B0.9800
N4—H1N40.847 (16)C6—H6C0.9800
C1—C21.4977 (13)
N1—O1—H1O1104.1 (12)N2—C3—C2115.15 (8)
C2—N1—O1111.22 (8)N2—C3—C4125.00 (9)
C3—N2—N3118.54 (8)C2—C3—C4119.84 (8)
C5—N3—N2117.75 (8)C3—C4—H4A109.5
C5—N3—H1N3118.0 (10)C3—C4—H4B109.5
N2—N3—H1N3124.1 (10)H4A—C4—H4B109.5
C5—N4—C6124.53 (8)C3—C4—H4C109.5
C5—N4—H1N4114.1 (11)H4A—C4—H4C109.5
C6—N4—H1N4120.9 (11)H4B—C4—H4C109.5
C2—C1—H1A109.5N4—C5—N3116.23 (8)
C2—C1—H1B109.5N4—C5—S1124.44 (7)
H1A—C1—H1B109.5N3—C5—S1119.33 (7)
C2—C1—H1C109.5N4—C6—H6A109.5
H1A—C1—H1C109.5N4—C6—H6B109.5
H1B—C1—H1C109.5H6A—C6—H6B109.5
N1—C2—C3115.02 (8)N4—C6—H6C109.5
N1—C2—C1124.30 (8)H6A—C6—H6C109.5
C3—C2—C1120.68 (8)H6B—C6—H6C109.5
C3—N2—N3—C5−177.76 (8)N1—C2—C3—C44.82 (14)
O1—N1—C2—C3178.35 (8)C1—C2—C3—C4−176.26 (10)
O1—N1—C2—C1−0.52 (13)C6—N4—C5—N3−176.61 (9)
N3—N2—C3—C2178.38 (8)C6—N4—C5—S13.43 (14)
N3—N2—C3—C4−1.47 (15)N2—N3—C5—N4−5.71 (13)
N1—C2—C3—N2−175.03 (9)N2—N3—C5—S1174.25 (6)
C1—C2—C3—N23.88 (13)
D—H···AD—HH···AD···AD—H···A
N3—H1N3···S1i0.877 (16)2.781 (16)3.6519 (9)172.0 (14)
N4—H1N4···N20.848 (16)2.155 (16)2.5932 (11)111.9 (13)
O1—H1O1···S1ii0.857 (19)2.437 (19)3.2930 (8)178.3 (17)
C1—H1B···N20.982.392.7919 (13)104
C4—H4A···S1i0.982.693.3991 (12)129
C4—H4B···N10.982.352.7698 (14)105
C4—H4C···O1iii0.982.713.6173 (16)154
C6—H6A···O1iv0.982.633.6011 (12)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H1N3⋯S1i0.877 (16)2.781 (16)3.6519 (9)172.0 (14)
N4—H1N4⋯N20.848 (16)2.155 (16)2.5932 (11)111.9 (13)
O1—H1O1⋯S1ii0.857 (19)2.437 (19)3.2930 (8)178.3 (17)
C4—H4A⋯S1i0.982.693.3991 (12)129

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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