Literature DB >> 22259437

(E)-3,3'-(Diazene-1,2-di-yl)bis-(1-methyl-1,4,5,6-tetra-hydro-pyrrolo-[3,4-c]pyrazol-5-ium) dinitrate dihydrate.

Jin-Mei Chen1, Hong Zhao.   

Abstract

The title compound, C(12)H(18)N(8) (2+)·2NO(3) (-)·2H(2)O, was synthesized unexpectedly from 3-amino-1-methyl-1,4,5,6-tetra-hydro-pyrrolo-[3,4-c]pyrazol-5-ium chloride and cerium(IV) ammonium nitrate. The cation has a crystallographically imposed centre of symmetry. In the crystal, the ions and water mol-ecules are linked via O-H⋯N, N-H⋯O and O-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2011        PMID: 22259437      PMCID: PMC3254494          DOI: 10.1107/S1600536811053347

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to potential anti­cancer kinase inhibitors, see: Fancelli et al. (2005 ▶); Gadekar et al. (1968 ▶). For a related structure, see: Xia et al. (2011 ▶).

Experimental

Crystal data

C12H18N8 2+·2NO3 −·2H2O M = 434.40 Triclinic, a = 6.2344 (12) Å b = 7.7725 (16) Å c = 9.7071 (19) Å α = 99.56 (3)° β = 92.49 (3)° γ = 92.84 (3)° V = 462.64 (16) Å3 Z = 1 Mo Kα radiation μ = 0.13 mm−1 T = 295 K 0.22 × 0.16 × 0.12 mm

Data collection

Rigaku SCXmini diffractometer 4322 measured reflections 1811 independent reflections 1479 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.131 S = 1.08 1811 reflections 145 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811053347/rz2680sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053347/rz2680Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811053347/rz2680Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H18N82+·2NO3·2H2OZ = 1
Mr = 434.40F(000) = 228
Triclinic, P1Dx = 1.559 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.2344 (12) ÅCell parameters from 4309 reflections
b = 7.7725 (16) Åθ = 3.1–27.2°
c = 9.7071 (19) ŵ = 0.13 mm1
α = 99.56 (3)°T = 295 K
β = 92.49 (3)°Prism, yellow
γ = 92.84 (3)°0.22 × 0.16 × 0.12 mm
V = 462.64 (16) Å3
Rigaku SCXmini diffractometer1479 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.034
graphiteθmax = 26.0°, θmin = 3.1°
Detector resolution: 13.6612 pixels mm-1h = −7→7
CCD_Profile_fitting scansk = −9→9
4322 measured reflectionsl = −11→11
1811 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.060P)2 + 0.1401P] where P = (Fo2 + 2Fc2)/3
1811 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7436 (3)0.6228 (2)0.52005 (18)0.0324 (4)
C20.8295 (3)0.6536 (2)0.65780 (17)0.0301 (4)
C31.0187 (3)0.7441 (2)0.65097 (18)0.0308 (4)
C40.7930 (3)0.6264 (3)0.80235 (18)0.0370 (5)
H4A0.75920.50430.80650.044*
H4B0.67900.69590.84260.044*
C51.1457 (3)0.7872 (3)0.78510 (19)0.0388 (5)
H5A1.15560.91190.81990.047*
H5B1.28910.74460.77790.047*
C71.2218 (3)0.8565 (3)0.4629 (2)0.0467 (5)
H7A1.31420.91900.53830.070*
H7B1.16740.93710.40680.070*
H7C1.30160.77170.40620.070*
N10.5569 (2)0.5305 (2)0.45680 (15)0.0353 (4)
N21.0105 (3)0.6894 (2)0.87401 (16)0.0404 (4)
H2A0.99120.75950.95560.049*
H2B1.08030.59680.89320.049*
N30.6426 (3)0.1158 (3)0.86872 (18)0.0456 (5)
N40.8749 (3)0.6936 (2)0.43628 (16)0.0363 (4)
N51.0436 (2)0.7685 (2)0.51941 (15)0.0340 (4)
O10.1944 (3)0.3662 (2)0.86511 (17)0.0527 (4)
O20.6074 (3)0.2635 (2)0.93400 (19)0.0651 (5)
O30.8117 (3)0.0492 (3)0.89667 (19)0.0733 (6)
O50.5152 (3)0.0407 (3)0.77657 (19)0.0761 (6)
H1E0.167 (4)0.323 (3)0.769 (3)0.068 (8)*
H1F0.323 (6)0.344 (4)0.886 (3)0.084 (10)*
U11U22U33U12U13U23
C10.0333 (9)0.0308 (9)0.0313 (9)0.0052 (8)−0.0060 (7)0.0007 (7)
C20.0293 (9)0.0284 (9)0.0310 (9)0.0027 (7)−0.0034 (7)0.0012 (7)
C30.0301 (9)0.0286 (9)0.0325 (9)0.0031 (7)−0.0016 (7)0.0024 (7)
C40.0318 (9)0.0437 (11)0.0341 (10)−0.0039 (8)−0.0051 (8)0.0065 (8)
C50.0311 (9)0.0456 (11)0.0379 (10)−0.0057 (8)−0.0047 (8)0.0061 (8)
C70.0461 (12)0.0463 (12)0.0498 (12)0.0040 (10)0.0094 (10)0.0122 (9)
N10.0359 (9)0.0330 (8)0.0347 (8)0.0038 (7)−0.0089 (6)0.0009 (6)
N20.0365 (9)0.0528 (10)0.0302 (8)−0.0027 (8)−0.0063 (7)0.0052 (7)
N30.0430 (10)0.0540 (11)0.0378 (9)−0.0108 (9)−0.0043 (8)0.0078 (8)
N40.0403 (9)0.0373 (9)0.0301 (8)0.0048 (7)−0.0042 (7)0.0034 (6)
N50.0353 (8)0.0332 (8)0.0336 (8)0.0042 (7)0.0007 (6)0.0051 (6)
O10.0513 (10)0.0694 (11)0.0375 (8)0.0156 (8)0.0006 (7)0.0056 (7)
O20.0619 (11)0.0573 (11)0.0706 (11)0.0123 (9)−0.0215 (8)−0.0018 (9)
O30.0658 (11)0.0726 (12)0.0727 (12)0.0239 (10)−0.0173 (9)−0.0139 (9)
O50.0587 (11)0.0946 (14)0.0639 (11)−0.0315 (10)−0.0129 (9)−0.0043 (10)
C1—N41.340 (3)C7—N51.451 (3)
C1—C21.397 (2)C7—H7A0.9600
C1—N11.398 (2)C7—H7B0.9600
C2—C31.353 (3)C7—H7C0.9600
C2—C41.479 (2)N1—N1i1.258 (3)
C3—N51.336 (2)N2—H2A0.9000
C3—C51.474 (2)N2—H2B0.9000
C4—N21.517 (2)N3—O51.221 (2)
C4—H4A0.9700N3—O31.237 (2)
C4—H4B0.9700N3—O21.250 (2)
C5—N21.500 (3)N4—N51.344 (2)
C5—H5A0.9700O1—H1E0.95 (3)
C5—H5B0.9700O1—H1F0.85 (4)
N4—C1—C2110.64 (16)N5—C7—H7A109.5
N4—C1—N1116.89 (16)N5—C7—H7B109.5
C2—C1—N1132.44 (17)H7A—C7—H7B109.5
C3—C2—C1104.04 (16)N5—C7—H7C109.5
C3—C2—C4111.36 (15)H7A—C7—H7C109.5
C1—C2—C4144.60 (17)H7B—C7—H7C109.5
N5—C3—C2109.44 (16)N1i—N1—C1112.49 (18)
N5—C3—C5136.16 (17)C5—N2—C4111.95 (14)
C2—C3—C5114.38 (16)C5—N2—H2A109.2
C2—C4—N2100.74 (14)C4—N2—H2A109.2
C2—C4—H4A111.6C5—N2—H2B109.2
N2—C4—H4A111.6C4—N2—H2B109.2
C2—C4—H4B111.6H2A—N2—H2B107.9
N2—C4—H4B111.6O5—N3—O3120.6 (2)
H4A—C4—H4B109.4O5—N3—O2120.7 (2)
C3—C5—N299.89 (14)O3—N3—O2118.73 (18)
C3—C5—H5A111.8C1—N4—N5105.67 (14)
N2—C5—H5A111.8C3—N5—N4110.19 (15)
C3—C5—H5B111.8C3—N5—C7128.79 (17)
N2—C5—H5B111.8N4—N5—C7120.99 (16)
H5A—C5—H5B109.5H1E—O1—H1F107 (3)
N4—C1—C2—C3−0.7 (2)N4—C1—N1—N1i−179.69 (18)
N1—C1—C2—C3176.94 (18)C2—C1—N1—N1i2.8 (3)
N4—C1—C2—C4179.0 (2)C3—C5—N2—C4−11.9 (2)
N1—C1—C2—C4−3.4 (4)C2—C4—N2—C513.2 (2)
C1—C2—C3—N50.9 (2)C2—C1—N4—N50.20 (19)
C4—C2—C3—N5−178.88 (15)N1—C1—N4—N5−177.85 (14)
C1—C2—C3—C5−177.86 (15)C2—C3—N5—N4−0.9 (2)
C4—C2—C3—C52.3 (2)C5—C3—N5—N4177.5 (2)
C3—C2—C4—N2−9.2 (2)C2—C3—N5—C7−179.34 (17)
C1—C2—C4—N2171.1 (2)C5—C3—N5—C7−0.9 (3)
N5—C3—C5—N2−172.5 (2)C1—N4—N5—C30.39 (19)
C2—C3—C5—N25.9 (2)C1—N4—N5—C7179.01 (16)
D—H···AD—HH···AD···AD—H···A
O1—H1E···N4i0.95 (3)1.98 (3)2.895 (2)163 (2)
N2—H2B···O1ii0.901.942.802 (3)159.
N2—H2A···O1iii0.902.442.970 (2)118.
N2—H2A···O3iv0.902.182.894 (3)136.
O1—H1F···O20.85 (4)1.97 (4)2.819 (2)173 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1E⋯N4i0.95 (3)1.98 (3)2.895 (2)163 (2)
N2—H2B⋯O1ii0.901.942.802 (3)159
N2—H2A⋯O1iii0.902.442.970 (2)118
N2—H2A⋯O3iv0.902.182.894 (3)136
O1—H1F⋯O20.85 (4)1.97 (4)2.819 (2)173 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  Potent and selective Aurora inhibitors identified by the expansion of a novel scaffold for protein kinase inhibition.

Authors:  Daniele Fancelli; Daniela Berta; Simona Bindi; Alexander Cameron; Paolo Cappella; Patrizia Carpinelli; Cornel Catana; Barbara Forte; Patrizia Giordano; Maria Laura Giorgini; Sergio Mantegani; Aurelio Marsiglio; Maurizio Meroni; Juergen Moll; Valeria Pittalà; Fulvia Roletto; Dino Severino; Chiara Soncini; Paola Storici; Roberto Tonani; Mario Varasi; Anna Vulpetti; Paola Vianello
Journal:  J Med Chem       Date:  2005-04-21       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Dihydropyrrolo[3,4-c]pyrazoles.

Authors:  S M Gadekar; B D Johnson; E Cohen
Journal:  J Med Chem       Date:  1968-05       Impact factor: 7.446

4.  5-tert-Butyl 1-ethyl 3-amino-1,4,5,6-tetra-hydro-pyrrolo-[3,4-c]pyrazole-1,5-dicarboxyl-ate.

Authors:  Wen-Bin Xia; Xiao-Guang Bai; Hong-Tao Liu; Ju-Xian Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-16
  4 in total

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