Literature DB >> 22259423

3'-[Hy-droxy(4-oxo-4H-chromen-3-yl)meth-yl]-2-oxospiro-[indoline-3,2'-pyrrolidine]-3'-carbonitrile.

E Govindan, K Sakthimurugesan, A Subbiahpandi, P Yuvaraj, Boreddy S R Reddy.   

Abstract

In the title compound, C(23)H(19)N(3)O(4), the pyran ring adopts a half-chair conformation, while the pyrrolidine (with a C atom as the flap atom) and the five-membered ring in the indoline (with a C atom as the flap atom) ring system adopt slight envelope conformations. The pyrrolidine ring makes dihedral angles of 83.3 (1) and 60.4 (1)° with the mean plane through all non-H atoms of the indoline and chromene ring systems, respectively. In the crystal, mol-ecules are connected by two unique N-H⋯O and O-H⋯O hydrogen-bonding inter-actions, which form centrosymmetric patterns described by graph-set motifs R(2) (2)(18) and R(2) (2)(14). These two motifs combine to form a hydrogen-bonded chain which propagates in the a-axis direction. The crystal structure is also stablized by C-H⋯O inter-actions and by aromatic π-π stacking inter-actions between the pyran and benzene rings of neighbouring mol-ecules [centroid-centroid distance = 3.755 (1) Å and slippage = 1.371 (2) Å].

Entities:  

Year:  2011        PMID: 22259423      PMCID: PMC3254481          DOI: 10.1107/S1600536811053098

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the biological use of pyrrolidine derivatives, see: Pettersson et al. (2011 ▶); Bello et al. (2010 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶) and for asymmetry parameters, see: Nardelli (1983 ▶). For the structure of another pyrrolidine derivatie, see: Selvanayagam et al. (2011 ▶).

Experimental

Crystal data

C23H19N3O4 M = 401.41 Triclinic, a = 9.3483 (7) Å b = 10.2256 (9) Å c = 10.9080 (9) Å α = 71.832 (5)° β = 88.309 (5)° γ = 78.248 (5)° V = 969.32 (14) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.20 × 0.20 × 0.19 mm

Data collection

Bruker APEXII CCD area detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996) ▶ T min = 0.981, T max = 0.982 17643 measured reflections 4841 independent reflections 3374 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.106 S = 1.02 4841 reflections 273 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811053098/nk2121sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053098/nk2121Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811053098/nk2121Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H19N3O4Z = 2
Mr = 401.41F(000) = 420
Triclinic, P1Dx = 1.375 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.3483 (7) ÅCell parameters from 4841 reflections
b = 10.2256 (9) Åθ = 2.0–28.4°
c = 10.9080 (9) ŵ = 0.10 mm1
α = 71.832 (5)°T = 293 K
β = 88.309 (5)°Block, white
γ = 78.248 (5)°0.20 × 0.20 × 0.19 mm
V = 969.32 (14) Å3
Bruker APEXII CCD area detector diffractometer4841 independent reflections
Radiation source: fine-focus sealed tube3374 reflections with I > 2σ(I)
graphiteRint = 0.028
ω and φ scansθmax = 28.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.981, Tmax = 0.982k = −13→13
17643 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0425P)2 + 0.2158P] where P = (Fo2 + 2Fc2)/3
4841 reflections(Δ/σ)max < 0.001
273 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.01655 (15)0.90996 (14)0.37494 (13)0.0379 (3)
C2−0.12747 (17)0.90527 (17)0.41086 (16)0.0507 (4)
H2−0.15150.82000.45710.061*
C3−0.2338 (2)1.0263 (2)0.37808 (19)0.0652 (5)
H3−0.32981.02270.40100.078*
C4−0.1974 (2)1.1539 (2)0.3107 (2)0.0701 (5)
H4−0.26981.23540.28970.084*
C5−0.0581 (2)1.16225 (17)0.27475 (17)0.0610 (5)
H5−0.03471.24830.23000.073*
C60.04833 (18)1.03947 (15)0.30641 (14)0.0449 (3)
C70.28974 (17)0.93517 (15)0.28421 (14)0.0448 (3)
H70.38110.94530.25110.054*
C80.27088 (15)0.80437 (14)0.34502 (12)0.0345 (3)
C90.13386 (15)0.78375 (14)0.40633 (12)0.0345 (3)
C100.39326 (14)0.67953 (14)0.35242 (12)0.0351 (3)
H100.38580.60330.43190.042*
C110.39211 (14)0.62424 (13)0.23496 (12)0.0324 (3)
C120.40376 (15)0.74112 (15)0.11646 (13)0.0377 (3)
C130.52387 (15)0.50169 (15)0.24145 (14)0.0411 (3)
H13A0.60750.53760.20030.049*
H13B0.55150.44630.33040.049*
C140.47078 (16)0.41335 (15)0.16957 (15)0.0442 (3)
H14A0.53330.40560.09860.053*
H14B0.46970.31970.22720.053*
C150.23476 (19)0.40250 (18)0.08659 (16)0.0541 (4)
H15A0.28150.36810.01990.081*
H15B0.13940.45800.05580.081*
H15C0.22560.32450.16100.081*
C160.26018 (14)0.56017 (13)0.21551 (11)0.0318 (3)
C170.22340 (15)0.45055 (14)0.34238 (12)0.0361 (3)
C180.00806 (15)0.59547 (14)0.25514 (13)0.0363 (3)
C190.11179 (14)0.65327 (14)0.17285 (12)0.0335 (3)
C200.06507 (16)0.77525 (15)0.07153 (13)0.0423 (3)
H200.13120.81410.01310.051*
C21−0.08275 (18)0.83888 (17)0.05857 (16)0.0515 (4)
H21−0.11490.9213−0.00880.062*
C22−0.18214 (17)0.78190 (18)0.14373 (17)0.0528 (4)
H22−0.27990.82740.13410.063*
C23−0.13801 (16)0.65743 (17)0.24364 (15)0.0470 (4)
H23−0.20470.61740.30060.056*
N10.41798 (16)0.83035 (15)0.02676 (13)0.0575 (4)
N30.32235 (12)0.48890 (12)0.12161 (10)0.0369 (3)
N20.07765 (13)0.47154 (12)0.34909 (11)0.0403 (3)
H2A0.03210.41580.40430.048*
O10.18680 (13)1.05308 (10)0.26729 (11)0.0532 (3)
O20.11877 (11)0.66834 (10)0.47960 (9)0.0429 (2)
O30.53230 (11)0.71535 (13)0.35228 (10)0.0496 (3)
H3A0.56220.69680.42690.074*
O40.31198 (11)0.35561 (11)0.41684 (10)0.0493 (3)
U11U22U33U12U13U23
C10.0380 (8)0.0409 (7)0.0372 (7)−0.0030 (6)0.0020 (6)−0.0189 (6)
C20.0414 (9)0.0560 (9)0.0579 (9)−0.0047 (7)0.0053 (7)−0.0260 (8)
C30.0431 (10)0.0754 (12)0.0775 (12)0.0055 (9)−0.0012 (9)−0.0356 (10)
C40.0646 (13)0.0602 (11)0.0767 (12)0.0199 (9)−0.0136 (10)−0.0281 (10)
C50.0707 (13)0.0436 (9)0.0613 (10)0.0050 (8)−0.0045 (9)−0.0160 (8)
C60.0520 (9)0.0413 (8)0.0410 (7)−0.0027 (7)0.0008 (7)−0.0165 (6)
C70.0455 (9)0.0446 (8)0.0467 (8)−0.0126 (7)0.0116 (7)−0.0164 (6)
C80.0342 (7)0.0403 (7)0.0323 (6)−0.0093 (6)0.0042 (5)−0.0154 (5)
C90.0376 (8)0.0378 (7)0.0325 (6)−0.0091 (6)0.0048 (5)−0.0166 (5)
C100.0297 (7)0.0438 (7)0.0327 (6)−0.0089 (6)0.0032 (5)−0.0126 (5)
C110.0269 (7)0.0380 (7)0.0326 (6)−0.0074 (5)0.0047 (5)−0.0115 (5)
C120.0348 (8)0.0444 (7)0.0386 (7)−0.0127 (6)0.0084 (6)−0.0172 (6)
C130.0285 (7)0.0478 (8)0.0459 (8)−0.0025 (6)0.0049 (6)−0.0169 (6)
C140.0399 (8)0.0427 (8)0.0497 (8)−0.0022 (6)0.0080 (6)−0.0186 (6)
C150.0573 (11)0.0598 (10)0.0600 (10)−0.0207 (8)0.0081 (8)−0.0346 (8)
C160.0301 (7)0.0357 (6)0.0299 (6)−0.0070 (5)0.0047 (5)−0.0107 (5)
C170.0373 (8)0.0382 (7)0.0343 (6)−0.0106 (6)0.0047 (6)−0.0121 (5)
C180.0316 (7)0.0435 (7)0.0381 (7)−0.0100 (6)0.0032 (5)−0.0177 (6)
C190.0291 (7)0.0401 (7)0.0341 (6)−0.0080 (5)0.0017 (5)−0.0152 (5)
C200.0400 (8)0.0462 (8)0.0389 (7)−0.0083 (6)−0.0015 (6)−0.0108 (6)
C210.0446 (9)0.0515 (9)0.0534 (9)0.0006 (7)−0.0133 (7)−0.0145 (7)
C220.0314 (8)0.0645 (10)0.0673 (10)−0.0005 (7)−0.0066 (7)−0.0325 (9)
C230.0298 (8)0.0627 (10)0.0569 (9)−0.0133 (7)0.0075 (6)−0.0289 (8)
N10.0658 (10)0.0599 (8)0.0469 (7)−0.0260 (7)0.0109 (7)−0.0093 (6)
N30.0354 (6)0.0406 (6)0.0387 (6)−0.0081 (5)0.0067 (5)−0.0183 (5)
N20.0363 (7)0.0448 (6)0.0405 (6)−0.0161 (5)0.0109 (5)−0.0104 (5)
O10.0591 (7)0.0378 (5)0.0605 (7)−0.0115 (5)0.0125 (5)−0.0122 (5)
O20.0431 (6)0.0395 (5)0.0455 (5)−0.0111 (4)0.0140 (4)−0.0120 (4)
O30.0338 (6)0.0765 (7)0.0456 (6)−0.0193 (5)0.0021 (4)−0.0244 (5)
O40.0472 (6)0.0489 (6)0.0416 (5)−0.0078 (5)−0.0029 (5)−0.0006 (5)
C1—C61.389 (2)C13—H13B0.9700
C1—C21.397 (2)C14—N31.4663 (18)
C1—C91.4682 (19)C14—H14A0.9700
C2—C31.376 (2)C14—H14B0.9700
C2—H20.9300C15—N31.4562 (18)
C3—C41.388 (3)C15—H15A0.9600
C3—H30.9300C15—H15B0.9600
C4—C51.361 (3)C15—H15C0.9600
C4—H40.9300C16—N31.4750 (16)
C5—C61.388 (2)C16—C191.5070 (18)
C5—H50.9300C16—C171.5658 (17)
C6—O11.3714 (19)C17—O41.2281 (16)
C7—C81.3401 (19)C17—N21.3389 (18)
C7—O11.3464 (18)C18—C231.375 (2)
C7—H70.9300C18—C191.3952 (18)
C8—C91.4506 (18)C18—N21.4047 (17)
C8—C101.5137 (19)C19—C201.3838 (19)
C9—O21.2346 (15)C20—C211.393 (2)
C10—O31.4202 (16)C20—H200.9300
C10—C111.5545 (17)C21—C221.378 (2)
C10—H100.9800C21—H210.9300
C11—C121.4806 (18)C22—C231.388 (2)
C11—C131.5536 (18)C22—H220.9300
C11—C161.5577 (18)C23—H230.9300
C12—N11.1370 (18)N2—H2A0.8600
C13—C141.525 (2)O3—H3A0.8200
C13—H13A0.9700
C6—C1—C2118.17 (14)N3—C14—H14A110.8
C6—C1—C9119.37 (13)C13—C14—H14A110.8
C2—C1—C9122.46 (13)N3—C14—H14B110.8
C3—C2—C1120.25 (16)C13—C14—H14B110.8
C3—C2—H2119.9H14A—C14—H14B108.8
C1—C2—H2119.9N3—C15—H15A109.5
C2—C3—C4119.87 (18)N3—C15—H15B109.5
C2—C3—H3120.1H15A—C15—H15B109.5
C4—C3—H3120.1N3—C15—H15C109.5
C5—C4—C3121.35 (17)H15A—C15—H15C109.5
C5—C4—H4119.3H15B—C15—H15C109.5
C3—C4—H4119.3N3—C16—C19113.02 (10)
C4—C5—C6118.53 (17)N3—C16—C1199.38 (10)
C4—C5—H5120.7C19—C16—C11120.44 (11)
C6—C5—H5120.7N3—C16—C17110.39 (10)
O1—C6—C5116.38 (14)C19—C16—C17101.30 (10)
O1—C6—C1121.81 (13)C11—C16—C17112.55 (10)
C5—C6—C1121.81 (16)O4—C17—N2126.16 (12)
C8—C7—O1125.13 (14)O4—C17—C16125.96 (12)
C8—C7—H7117.4N2—C17—C16107.66 (11)
O1—C7—H7117.4C23—C18—C19122.99 (13)
C7—C8—C9119.49 (13)C23—C18—N2127.48 (13)
C7—C8—C10120.12 (12)C19—C18—N2109.50 (12)
C9—C8—C10120.38 (11)C20—C19—C18118.68 (13)
O2—C9—C8121.90 (12)C20—C19—C16132.64 (12)
O2—C9—C1123.19 (12)C18—C19—C16108.66 (11)
C8—C9—C1114.91 (12)C19—C20—C21118.85 (14)
O3—C10—C8111.26 (11)C19—C20—H20120.6
O3—C10—C11104.83 (10)C21—C20—H20120.6
C8—C10—C11113.27 (10)C22—C21—C20121.21 (15)
O3—C10—H10109.1C22—C21—H21119.4
C8—C10—H10109.1C20—C21—H21119.4
C11—C10—H10109.1C21—C22—C23120.75 (15)
C12—C11—C13107.68 (11)C21—C22—H22119.6
C12—C11—C10107.99 (10)C23—C22—H22119.6
C13—C11—C10112.06 (10)C18—C23—C22117.45 (14)
C12—C11—C16108.36 (10)C18—C23—H23121.3
C13—C11—C16102.03 (10)C22—C23—H23121.3
C10—C11—C16118.22 (10)C15—N3—C14113.60 (12)
N1—C12—C11177.45 (15)C15—N3—C16116.64 (11)
C14—C13—C11105.22 (11)C14—N3—C16106.96 (10)
C14—C13—H13A110.7C17—N2—C18111.97 (11)
C11—C13—H13A110.7C17—N2—H2A124.0
C14—C13—H13B110.7C18—N2—H2A124.0
C11—C13—H13B110.7C7—O1—C6118.17 (11)
H13A—C13—H13B108.8C10—O3—H3A109.5
N3—C14—C13104.94 (11)
C6—C1—C2—C30.3 (2)C10—C11—C16—C1971.10 (15)
C9—C1—C2—C3−179.39 (14)C12—C11—C16—C17−171.44 (11)
C1—C2—C3—C4−0.9 (3)C13—C11—C16—C1775.12 (12)
C2—C3—C4—C50.7 (3)C10—C11—C16—C17−48.25 (15)
C3—C4—C5—C60.3 (3)N3—C16—C17—O463.93 (17)
C4—C5—C6—O1179.54 (15)C19—C16—C17—O4−176.09 (13)
C4—C5—C6—C1−1.0 (2)C11—C16—C17—O4−46.11 (18)
C2—C1—C6—O1−179.85 (13)N3—C16—C17—N2−110.91 (12)
C9—C1—C6—O1−0.2 (2)C19—C16—C17—N29.07 (13)
C2—C1—C6—C50.7 (2)C11—C16—C17—N2139.05 (11)
C9—C1—C6—C5−179.63 (13)C23—C18—C19—C20−2.9 (2)
O1—C7—C8—C9−4.4 (2)N2—C18—C19—C20178.87 (11)
O1—C7—C8—C10177.16 (13)C23—C18—C19—C16178.50 (12)
C7—C8—C9—O2−168.83 (13)N2—C18—C19—C160.27 (14)
C10—C8—C9—O29.61 (19)N3—C16—C19—C20−65.67 (18)
C7—C8—C9—C110.87 (18)C11—C16—C19—C2051.41 (19)
C10—C8—C9—C1−170.68 (11)C17—C16—C19—C20176.24 (14)
C6—C1—C9—O2171.04 (13)N3—C16—C19—C18112.66 (12)
C2—C1—C9—O2−9.3 (2)C11—C16—C19—C18−130.27 (12)
C6—C1—C9—C8−8.66 (18)C17—C16—C19—C18−5.43 (13)
C2—C1—C9—C8171.01 (13)C18—C19—C20—C212.6 (2)
C7—C8—C10—O329.78 (17)C16—C19—C20—C21−179.22 (14)
C9—C8—C10—O3−148.65 (11)C19—C20—C21—C22−0.6 (2)
C7—C8—C10—C11−88.01 (15)C20—C21—C22—C23−1.3 (2)
C9—C8—C10—C1193.56 (14)C19—C18—C23—C221.0 (2)
O3—C10—C11—C12−63.12 (13)N2—C18—C23—C22178.92 (13)
C8—C10—C11—C1258.35 (14)C21—C22—C23—C181.1 (2)
O3—C10—C11—C1355.30 (13)C13—C14—N3—C15−161.39 (12)
C8—C10—C11—C13176.78 (11)C13—C14—N3—C16−31.23 (14)
O3—C10—C11—C16173.51 (11)C19—C16—N3—C15−56.75 (15)
C8—C10—C11—C16−65.02 (15)C11—C16—N3—C15174.33 (11)
C13—C11—C12—N1−49 (3)C17—C16—N3—C1555.90 (15)
C10—C11—C12—N172 (3)C19—C16—N3—C14174.84 (11)
C16—C11—C12—N1−159 (3)C11—C16—N3—C1445.93 (12)
C12—C11—C13—C14−89.80 (13)C17—C16—N3—C14−72.51 (13)
C10—C11—C13—C14151.59 (11)O4—C17—N2—C18175.49 (13)
C16—C11—C13—C1424.15 (13)C16—C17—N2—C18−9.68 (15)
C11—C13—C14—N32.87 (14)C23—C18—N2—C17−171.89 (13)
C12—C11—C16—N371.75 (12)C19—C18—N2—C176.24 (16)
C13—C11—C16—N3−41.69 (11)C8—C7—O1—C6−5.0 (2)
C10—C11—C16—N3−165.06 (10)C5—C6—O1—C7−173.25 (14)
C12—C11—C16—C19−52.08 (15)C1—C6—O1—C77.3 (2)
C13—C11—C16—C19−165.52 (11)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O2i0.862.012.8479 (14)164.
O3—H3A···O4ii0.821.972.7631 (14)164.
C23—H23···O3iii0.932.583.2761 (18)133.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O2i0.862.012.8479 (14)164
O3—H3A⋯O4ii0.821.972.7631 (14)164
C23—H23⋯O3iii0.932.583.2761 (18)133

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  Design, synthesis, and pharmacological evaluation of azetedine and pyrrolidine derivatives as dual norepinephrine reuptake inhibitors and 5-HT(1A) partial agonists.

Authors:  Martin Pettersson; Brian M Campbell; Amy B Dounay; David L Gray; Longfei Xie; Christopher J O'Donnell; Nancy C Stratman; Kim Zoski; Elena Drummond; Gary Bora; Al Probert; Tammy Whisman
Journal:  Bioorg Med Chem Lett       Date:  2010-11-21       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Novel 2-[(benzylamino)methyl]pyrrolidine-3,4-diol derivatives as alpha-mannosidase inhibitors and with antitumor activities against hematological and solid malignancies.

Authors:  Claudia Bello; Michele Cea; Giovanna Dal Bello; Anna Garuti; Ilaria Rocco; Gabriella Cirmena; Eva Moran; Aimable Nahimana; Michel A Duchosal; Floriana Fruscione; Paolo Pronzato; Francesco Grossi; Franco Patrone; Alberto Ballestrero; Marc Dupuis; Bernard Sordat; Alessio Nencioni; Pierre Vogel
Journal:  Bioorg Med Chem       Date:  2010-03-09       Impact factor: 3.641

4.  1'-Methyl-4'-(1-naphth-yl)-1'',2'',3'',4''-tetra-hydro-indane-2-spiro-2'-pyrrolidine-3'-spiro-2''-naphthalene-1,3,1''-trione.

Authors:  S Selvanayagam; B Sridhar; K Ravikumar; P Saravanan; R Raghunathan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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