Literature DB >> 22259420

5,6-Dimethyl-pyrazine-2,3-dicarb-oxy-lic acid.

Fu-Hong Liu1.   

Abstract

The asymmetric unit of the title compound, C(8)H(8)N(2)O(4), consists of one complete mol-ecule and a second mol-ecule generated by the application of twofold axis. The mean planes of the two carboxyl groups attached to the pyrazine ring at neighboring positions are twisted by 10.8 (1) and 87.9 (1)° in the complete molecule and 43.0 (1)° in the symmetry-generated molecule. The crystal packing features O-H⋯N hydrogen bonds, which link the mol-ecules into layers along [101].

Entities:  

Year:  2011        PMID: 22259420      PMCID: PMC3254478          DOI: 10.1107/S1600536811052366

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see Tsuda & Fujishima (1981 ▶). For the structure of the hydrate of the title compound, see Vishweshwar et al. (2001 ▶, 2004 ▶). For a related compound containing pyrazine-2,3-dicarb­oxy­lic acid, see: Alborés & Rentschler (2009 ▶).

Experimental

Crystal data

C8H8N2O4 M = 196.16 Monoclinic, a = 15.873 (3) Å b = 14.057 (3) Å c = 11.991 (2) Å β = 109.21 (3)° V = 2526.6 (9) Å3 Z = 12 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Rigaku SCX-mini diffractometer 10832 measured reflections 2230 independent reflections 1937 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.133 S = 1.07 2230 reflections 196 parameters H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.39 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811052366/jj2111sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052366/jj2111Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811052366/jj2111Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H8N2O4F(000) = 1224
Mr = 196.16Dx = 1.547 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 10631 reflections
a = 15.873 (3) Åθ = 3.4–27.8°
b = 14.057 (3) ŵ = 0.13 mm1
c = 11.991 (2) ÅT = 293 K
β = 109.21 (3)°Block, colourless
V = 2526.6 (9) Å30.30 × 0.25 × 0.20 mm
Z = 12
Rigaku SCX-mini diffractometer1937 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.043
graphiteθmax = 25.0°, θmin = 3.4°
ω scansh = −18→18
10832 measured reflectionsk = −16→16
2230 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0617P)2 + 3.0039P] where P = (Fo2 + 2Fc2)/3
2230 reflections(Δ/σ)max < 0.001
196 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.28005 (14)0.38972 (11)0.78999 (16)0.0595 (6)
H10.25870.34680.74280.089*
O20.17345 (15)0.47314 (13)0.66739 (18)0.0745 (7)
O30.20112 (11)0.67092 (14)0.57803 (14)0.0482 (5)
H30.15910.68470.51900.072*
O40.09881 (12)0.67291 (15)0.66709 (16)0.0567 (5)
O50.40546 (13)0.35937 (12)0.02848 (13)0.0474 (5)
H50.38150.41010.00260.071*
O60.40159 (11)0.41517 (11)0.20060 (15)0.0439 (4)
N10.34098 (12)0.54156 (12)0.92729 (14)0.0318 (4)
N20.28289 (12)0.72021 (12)0.84036 (15)0.0325 (4)
N30.43566 (12)0.18493 (12)0.14017 (14)0.0311 (4)
C10.23855 (16)0.46795 (15)0.75119 (19)0.0362 (5)
C20.27656 (14)0.55308 (14)0.82342 (17)0.0291 (5)
C30.37616 (14)0.61868 (15)0.98780 (18)0.0325 (5)
C40.44770 (18)0.60708 (18)1.1037 (2)0.0491 (7)
H4A0.42310.61601.16620.074*
H4B0.49360.65341.11100.074*
H4C0.47260.54441.10900.074*
C50.17291 (15)0.66150 (14)0.66717 (19)0.0324 (5)
C60.24752 (13)0.64193 (14)0.78045 (17)0.0276 (5)
C70.34688 (14)0.70945 (15)0.94401 (18)0.0315 (5)
C80.38542 (18)0.79617 (17)1.0119 (2)0.0489 (7)
H8A0.44580.80401.01320.073*
H8B0.38460.79001.09130.073*
H8C0.35080.85060.97520.073*
C90.42126 (14)0.35590 (15)0.14246 (18)0.0316 (5)
C100.46645 (14)0.26613 (14)0.19620 (17)0.0286 (5)
C110.46841 (15)0.10400 (15)0.19300 (18)0.0315 (5)
C120.43794 (18)0.01403 (16)0.1277 (2)0.0462 (6)
H12A0.38700.02640.05930.069*
H12B0.4220−0.03060.17800.069*
H12C0.4851−0.01200.10360.069*
U11U22U33U12U13U23
O10.0717 (13)0.0232 (8)0.0508 (11)0.0069 (8)−0.0244 (9)−0.0016 (7)
O20.0871 (15)0.0368 (10)0.0546 (12)0.0090 (10)−0.0375 (11)−0.0110 (9)
O30.0448 (10)0.0646 (12)0.0236 (8)0.0094 (9)−0.0042 (7)0.0075 (8)
O40.0354 (10)0.0753 (14)0.0467 (11)0.0054 (9)−0.0037 (8)0.0138 (9)
O50.0688 (12)0.0361 (9)0.0240 (8)0.0145 (9)−0.0028 (8)0.0065 (7)
O60.0525 (11)0.0343 (9)0.0447 (10)0.0100 (8)0.0157 (8)0.0008 (7)
N10.0353 (10)0.0277 (9)0.0221 (9)−0.0014 (8)−0.0044 (8)0.0045 (7)
N20.0346 (10)0.0269 (9)0.0257 (9)−0.0005 (8)−0.0040 (8)0.0010 (7)
N30.0375 (10)0.0278 (9)0.0201 (9)−0.0013 (8)−0.0014 (7)−0.0005 (7)
C10.0447 (13)0.0259 (11)0.0258 (11)−0.0001 (10)−0.0049 (10)0.0017 (9)
C20.0313 (11)0.0263 (11)0.0223 (10)−0.0008 (9)−0.0011 (8)0.0021 (8)
C30.0344 (12)0.0310 (11)0.0232 (11)−0.0061 (9)−0.0027 (9)0.0032 (8)
C40.0528 (16)0.0414 (13)0.0319 (13)−0.0110 (12)−0.0148 (11)0.0073 (10)
C50.0341 (13)0.0226 (11)0.0295 (12)0.0000 (9)−0.0042 (9)0.0024 (8)
C60.0291 (11)0.0241 (10)0.0226 (10)−0.0021 (9)−0.0011 (8)−0.0004 (8)
C70.0340 (12)0.0298 (11)0.0229 (11)−0.0052 (9)−0.0012 (9)0.0002 (8)
C80.0577 (16)0.0324 (13)0.0369 (14)−0.0090 (11)−0.0111 (12)−0.0027 (10)
C90.0312 (11)0.0287 (11)0.0275 (11)−0.0012 (9)−0.0006 (9)0.0019 (9)
C100.0339 (11)0.0263 (11)0.0210 (10)−0.0003 (9)0.0026 (8)−0.0011 (8)
C110.0392 (12)0.0260 (11)0.0239 (11)−0.0021 (9)0.0027 (9)−0.0010 (8)
C120.0618 (16)0.0295 (12)0.0338 (13)−0.0040 (11)−0.0025 (11)−0.0054 (10)
O1—C11.288 (3)C3—C71.400 (3)
O1—H10.8200C3—C41.487 (3)
O2—C11.183 (3)C4—H4A0.9600
O3—C51.294 (3)C4—H4B0.9600
O3—H30.8200C4—H4C0.9600
O4—C51.187 (3)C5—C61.505 (3)
O5—C91.307 (3)C7—C81.482 (3)
O5—H50.8200C8—H8A0.9600
O6—C91.192 (3)C8—H8B0.9600
N1—C31.322 (3)C8—H8C0.9600
N1—C21.336 (3)C9—C101.489 (3)
N2—C71.330 (3)C10—C10i1.377 (4)
N2—C61.333 (3)C11—C11i1.405 (4)
N3—C111.323 (3)C11—C121.482 (3)
N3—C101.333 (3)C12—H12A0.9600
C1—C21.484 (3)C12—H12B0.9600
C2—C61.372 (3)C12—H12C0.9600
C1—O1—H1109.5C2—C6—C5124.95 (18)
C5—O3—H3109.5N2—C7—C3120.76 (18)
C9—O5—H5109.5N2—C7—C8118.06 (19)
C3—N1—C2117.91 (17)C3—C7—C8121.17 (19)
C7—N2—C6117.82 (18)C7—C8—H8A109.5
C11—N3—C10118.29 (17)C7—C8—H8B109.5
O2—C1—O1124.0 (2)H8A—C8—H8B109.5
O2—C1—C2121.3 (2)C7—C8—H8C109.5
O1—C1—C2114.60 (18)H8A—C8—H8C109.5
N1—C2—C6121.33 (18)H8B—C8—H8C109.5
N1—C2—C1119.07 (18)O6—C9—O5126.0 (2)
C6—C2—C1119.54 (18)O6—C9—C10121.38 (19)
N1—C3—C7120.89 (18)O5—C9—C10112.56 (19)
N1—C3—C4118.57 (19)N3—C10—C10i120.98 (11)
C7—C3—C4120.54 (19)N3—C10—C9117.57 (18)
C3—C4—H4A109.5C10i—C10—C9121.30 (11)
C3—C4—H4B109.5N3—C11—C11i120.57 (11)
H4A—C4—H4B109.5N3—C11—C12118.19 (19)
C3—C4—H4C109.5C11i—C11—C12121.23 (13)
H4A—C4—H4C109.5C11—C12—H12A109.5
H4B—C4—H4C109.5C11—C12—H12B109.5
O4—C5—O3126.7 (2)H12A—C12—H12B109.5
O4—C5—C6120.7 (2)C11—C12—H12C109.5
O3—C5—C6112.4 (2)H12A—C12—H12C109.5
N2—C6—C2121.28 (18)H12B—C12—H12C109.5
N2—C6—C5113.73 (17)
C3—N1—C2—C60.0 (3)O4—C5—C6—C293.3 (3)
C3—N1—C2—C1177.4 (2)O3—C5—C6—C2−91.5 (3)
O2—C1—C2—N1169.2 (3)C6—N2—C7—C30.4 (3)
O1—C1—C2—N1−8.3 (3)C6—N2—C7—C8−179.0 (2)
O2—C1—C2—C6−13.3 (4)N1—C3—C7—N20.0 (3)
O1—C1—C2—C6169.1 (2)C4—C3—C7—N2−180.0 (2)
C2—N1—C3—C7−0.2 (3)N1—C3—C7—C8179.4 (2)
C2—N1—C3—C4179.8 (2)C4—C3—C7—C8−0.6 (4)
C7—N2—C6—C2−0.6 (3)C11—N3—C10—C10i3.0 (4)
C7—N2—C6—C5177.3 (2)C11—N3—C10—C9−172.7 (2)
N1—C2—C6—N20.5 (3)O6—C9—C10—N3134.4 (2)
C1—C2—C6—N2−177.0 (2)O5—C9—C10—N3−44.4 (3)
N1—C2—C6—C5−177.3 (2)O6—C9—C10—C10i−41.3 (4)
C1—C2—C6—C55.3 (3)O5—C9—C10—C10i140.0 (3)
O4—C5—C6—N2−84.5 (3)C10—N3—C11—C11i2.3 (4)
O3—C5—C6—N290.6 (2)C10—N3—C11—C12−176.5 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···N2ii0.82 (1)2.042.845 (2)167.
O3—H3···N3iii0.82 (1)2.002.803 (2)165.
O5—H5···N1iv0.82 (1)2.062.874 (2)169.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N2i0.82 (1)2.042.845 (2)167
O3—H3⋯N3ii0.82 (1)2.002.803 (2)165
O5—H5⋯N1iii0.82 (1)2.062.874 (2)169

Symmetry codes: (i) ; (ii) ; (iii) .

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