Literature DB >> 22259418

2,4,5-Tris(pyridin-4-yl)-1H-imidazole monohydrate.

Shen-Tang Wang1, Guang-Bo Che, Chun-Bo Liu, Xing Wang, Ling Liu.   

Abstract

In the crystal structure of the title compound, C(18)H(13)N(5)·H(2)O, adjacent mol-ecules are linked by O-H⋯N and N-H⋯O hydrogen bonds, generating a chain propagating along [001].

Entities:  

Year:  2011        PMID: 22259418      PMCID: PMC3254476          DOI: 10.1107/S1600536811053013

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of 2,4,5-tri(4-pyrid­yl)imidazole in the construction of metal-organic coordination polymers, see: Wang et al. (2009 ▶); Liang et al. (2009 ▶). For related structures, see: Jiang & Hou (2011 ▶); Li (2011 ▶); Li & Xia (2011 ▶). For the preparation, see: Proskurnina et al. (2002 ▶).

Experimental

Crystal data

C18H13N5·H2O M = 317.35 Triclinic, a = 8.1510 (16) Å b = 9.5210 (19) Å c = 11.506 (2) Å α = 103.80 (3)° β = 105.64 (3)° γ = 101.03 (3)° V = 803.3 (4) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.35 × 0.25 × 0.2 mm

Data collection

Bruker SMART diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.970, T max = 1.000 7510 measured reflections 2912 independent reflections 1792 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.125 S = 1.02 2876 reflections 218 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811053013/zj2036sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053013/zj2036Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811053013/zj2036Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H13N5·H2OZ = 2
Mr = 317.35F(000) = 332
Triclinic, P1Dx = 1.312 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1510 (16) ÅCell parameters from 3107 reflections
b = 9.5210 (19) Åθ = 3.0–25.2°
c = 11.506 (2) ŵ = 0.09 mm1
α = 103.80 (3)°T = 293 K
β = 105.64 (3)°Prism, colourless
γ = 101.03 (3)°0.35 × 0.25 × 0.2 mm
V = 803.3 (4) Å3
Bruker SMART diffractometer2912 independent reflections
Radiation source: fine-focus sealed tube1792 reflections with I > 2σ(I)
graphiteRint = 0.040
ω scansθmax = 25.2°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −9→9
Tmin = 0.970, Tmax = 1.000k = −11→11
7510 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0171P)2 + 0.605P] where P = (Fo2 + 2Fc2)/3
2876 reflections(Δ/σ)max < 0.001
218 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.2548 (3)0.5006 (2)0.26415 (19)0.0544 (6)
H10.28000.54370.34690.082*
N20.1414 (3)0.3416 (2)0.06806 (19)0.0542 (6)
N3−0.0531 (4)0.0012 (3)0.3185 (2)0.0738 (7)
N40.2559 (4)0.5283 (3)−0.2901 (2)0.0749 (7)
N50.5288 (4)1.0560 (3)0.3379 (3)0.0764 (8)
C10.1603 (3)0.3582 (3)0.1895 (2)0.0518 (6)
C20.2265 (3)0.4798 (3)0.0649 (2)0.0523 (6)
C30.2960 (3)0.5811 (3)0.1858 (2)0.0530 (7)
C40.0870 (3)0.2404 (3)0.2365 (2)0.0520 (6)
C50.1271 (4)0.2521 (3)0.3637 (3)0.0671 (8)
H5A0.20260.33990.42520.080*
C60.0536 (4)0.1317 (3)0.3987 (3)0.0739 (9)
H6A0.08120.14330.48490.089*
C7−0.0932 (4)−0.0074 (3)0.1966 (3)0.0754 (9)
H7A−0.1703−0.09620.13740.091*
C8−0.0284 (4)0.1062 (3)0.1517 (3)0.0668 (8)
H8A−0.06210.09260.06500.080*
C90.2386 (3)0.4986 (3)−0.0558 (2)0.0527 (6)
C100.1214 (4)0.4006 (3)−0.1700 (2)0.0594 (7)
H10A0.03420.3211−0.17090.071*
C110.1334 (4)0.4203 (3)−0.2821 (3)0.0708 (8)
H11A0.05050.3537−0.35720.085*
C120.3716 (4)0.6201 (4)−0.1801 (3)0.0775 (9)
H12A0.46000.6962−0.18260.093*
C130.3698 (4)0.6105 (3)−0.0626 (3)0.0681 (8)
H13A0.45520.67780.01100.082*
C140.3805 (4)0.7431 (3)0.2368 (2)0.0549 (7)
C150.3141 (4)0.8416 (3)0.1767 (3)0.0675 (8)
H15A0.21850.80490.10150.081*
C160.3925 (4)0.9939 (3)0.2305 (3)0.0754 (9)
H16A0.34701.05770.18900.090*
C170.5915 (4)0.9608 (3)0.3939 (3)0.0735 (9)
H17A0.68791.00090.46850.088*
C180.5219 (4)0.8055 (3)0.3480 (3)0.0650 (8)
H18A0.57010.74460.39180.078*
O10.3155 (4)0.6367 (2)0.51602 (18)0.1058 (10)
H1A0.35970.72980.55810.159*
H1B0.30440.59920.57450.159*
U11U22U33U12U13U23
N10.0703 (14)0.0475 (12)0.0430 (12)0.0090 (10)0.0198 (10)0.0139 (9)
N20.0711 (15)0.0475 (12)0.0439 (12)0.0088 (10)0.0215 (11)0.0167 (9)
N30.0983 (19)0.0555 (14)0.0683 (17)0.0082 (13)0.0323 (15)0.0249 (13)
N40.102 (2)0.0736 (16)0.0558 (15)0.0144 (15)0.0375 (15)0.0265 (13)
N50.0884 (19)0.0549 (15)0.0791 (18)0.0055 (14)0.0317 (16)0.0152 (14)
C10.0689 (17)0.0422 (13)0.0430 (14)0.0118 (12)0.0187 (13)0.0129 (11)
C20.0652 (16)0.0482 (14)0.0426 (14)0.0091 (12)0.0199 (12)0.0153 (11)
C30.0660 (17)0.0482 (14)0.0446 (14)0.0091 (12)0.0201 (13)0.0171 (11)
C40.0680 (17)0.0428 (13)0.0470 (15)0.0122 (12)0.0209 (13)0.0174 (11)
C50.097 (2)0.0510 (15)0.0484 (16)0.0064 (15)0.0245 (15)0.0162 (13)
C60.111 (3)0.0599 (18)0.0564 (18)0.0163 (17)0.0360 (18)0.0236 (15)
C70.094 (2)0.0519 (17)0.068 (2)−0.0007 (15)0.0184 (17)0.0212 (15)
C80.088 (2)0.0522 (16)0.0527 (16)0.0074 (15)0.0191 (15)0.0174 (13)
C90.0659 (17)0.0511 (14)0.0462 (14)0.0145 (12)0.0225 (13)0.0204 (12)
C100.0738 (18)0.0566 (16)0.0473 (15)0.0113 (14)0.0228 (14)0.0169 (13)
C110.090 (2)0.0732 (19)0.0474 (17)0.0160 (17)0.0259 (16)0.0173 (14)
C120.097 (2)0.071 (2)0.068 (2)0.0054 (17)0.0402 (19)0.0273 (17)
C130.079 (2)0.0656 (18)0.0517 (17)0.0000 (15)0.0251 (15)0.0158 (14)
C140.0670 (17)0.0486 (14)0.0492 (15)0.0082 (12)0.0251 (13)0.0148 (12)
C150.078 (2)0.0519 (16)0.0657 (19)0.0083 (14)0.0172 (16)0.0212 (14)
C160.087 (2)0.0536 (17)0.086 (2)0.0151 (16)0.0285 (19)0.0265 (16)
C170.080 (2)0.0604 (18)0.0624 (19)−0.0019 (16)0.0216 (16)0.0061 (15)
C180.077 (2)0.0548 (16)0.0552 (17)0.0068 (14)0.0185 (15)0.0156 (13)
O10.187 (3)0.0597 (13)0.0500 (12)−0.0125 (14)0.0451 (14)0.0087 (10)
N1—C11.363 (3)C7—H7A0.9300
N1—C31.381 (3)C8—H8A0.9300
N1—H10.8907C9—C101.381 (3)
N2—C11.331 (3)C9—C131.390 (3)
N2—C21.379 (3)C10—C111.373 (4)
N3—C61.326 (4)C10—H10A0.9300
N3—C71.329 (4)C11—H11A0.9300
N4—C111.329 (4)C12—C131.381 (4)
N4—C121.330 (4)C12—H12A0.9300
N5—C161.330 (4)C13—H13A0.9300
N5—C171.333 (4)C14—C181.378 (4)
C1—C41.454 (3)C14—C151.397 (4)
C2—C31.383 (3)C15—C161.378 (4)
C2—C91.469 (3)C15—H15A0.9300
C3—C141.463 (3)C16—H16A0.9300
C4—C51.383 (3)C17—C181.390 (4)
C4—C81.385 (3)C17—H17A0.9300
C5—C61.387 (4)C18—H18A0.9300
C5—H5A0.9300O1—H1A0.8543
C6—H6A0.9300O1—H1B0.8500
C7—C81.382 (4)
C1—N1—C3107.5 (2)C10—C9—C13116.4 (2)
C1—N1—H1130.1C10—C9—C2120.8 (2)
C3—N1—H1122.1C13—C9—C2122.8 (2)
C1—N2—C2105.6 (2)C11—C10—C9120.2 (3)
C6—N3—C7115.0 (2)C11—C10—H10A119.9
C11—N4—C12115.6 (2)C9—C10—H10A119.9
C16—N5—C17116.0 (3)N4—C11—C10124.1 (3)
N2—C1—N1111.3 (2)N4—C11—H11A117.9
N2—C1—C4124.4 (2)C10—C11—H11A117.9
N1—C1—C4124.3 (2)N4—C12—C13124.6 (3)
N2—C2—C3110.2 (2)N4—C12—H12A117.7
N2—C2—C9119.8 (2)C13—C12—H12A117.7
C3—C2—C9130.0 (2)C12—C13—C9119.1 (3)
N1—C3—C2105.3 (2)C12—C13—H13A120.5
N1—C3—C14120.4 (2)C9—C13—H13A120.5
C2—C3—C14134.0 (2)C18—C14—C15117.3 (2)
C5—C4—C8116.3 (2)C18—C14—C3122.0 (2)
C5—C4—C1123.8 (2)C15—C14—C3120.6 (2)
C8—C4—C1119.9 (2)C16—C15—C14118.9 (3)
C4—C5—C6119.4 (3)C16—C15—H15A120.5
C4—C5—H5A120.3C14—C15—H15A120.5
C6—C5—H5A120.3N5—C16—C15124.5 (3)
N3—C6—C5124.9 (3)N5—C16—H16A117.7
N3—C6—H6A117.5C15—C16—H16A117.7
C5—C6—H6A117.5N5—C17—C18124.1 (3)
N3—C7—C8124.6 (3)N5—C17—H17A117.9
N3—C7—H7A117.7C18—C17—H17A117.9
C8—C7—H7A117.7C14—C18—C17119.1 (3)
C7—C8—C4119.7 (3)C14—C18—H18A120.4
C7—C8—H8A120.1C17—C18—H18A120.4
C4—C8—H8A120.1H1A—O1—H1B100.9
C2—N2—C1—N1−0.5 (3)N2—C2—C9—C1021.5 (4)
C2—N2—C1—C4178.6 (3)C3—C2—C9—C10−161.6 (3)
C3—N1—C1—N21.3 (3)N2—C2—C9—C13−156.1 (3)
C3—N1—C1—C4−177.8 (3)C3—C2—C9—C1320.8 (5)
C1—N2—C2—C3−0.5 (3)C13—C9—C10—C11−2.7 (4)
C1—N2—C2—C9176.9 (2)C2—C9—C10—C11179.5 (3)
C1—N1—C3—C2−1.6 (3)C12—N4—C11—C100.2 (5)
C1—N1—C3—C14173.1 (2)C9—C10—C11—N41.6 (5)
N2—C2—C3—N11.3 (3)C11—N4—C12—C13−0.8 (5)
C9—C2—C3—N1−175.8 (3)N4—C12—C13—C9−0.5 (5)
N2—C2—C3—C14−172.3 (3)C10—C9—C13—C122.2 (4)
C9—C2—C3—C1410.6 (5)C2—C9—C13—C12179.9 (3)
N2—C1—C4—C5170.9 (3)N1—C3—C14—C1845.8 (4)
N1—C1—C4—C5−10.2 (4)C2—C3—C14—C18−141.4 (3)
N2—C1—C4—C8−8.3 (4)N1—C3—C14—C15−131.1 (3)
N1—C1—C4—C8170.7 (3)C2—C3—C14—C1541.7 (5)
C8—C4—C5—C60.8 (4)C18—C14—C15—C160.2 (4)
C1—C4—C5—C6−178.4 (3)C3—C14—C15—C16177.3 (3)
C7—N3—C6—C5−2.3 (5)C17—N5—C16—C150.7 (5)
C4—C5—C6—N31.1 (5)C14—C15—C16—N5−0.3 (5)
C6—N3—C7—C81.7 (5)C16—N5—C17—C18−0.9 (5)
N3—C7—C8—C40.1 (5)C15—C14—C18—C17−0.4 (4)
C5—C4—C8—C7−1.3 (4)C3—C14—C18—C17−177.4 (3)
C1—C4—C8—C7177.9 (3)N5—C17—C18—C140.8 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N5i0.851.992.843 (3)177.
N1—H1···O10.891.852.741 (3)176.
O1—H1B···N4ii0.851.942.787 (3)172.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N5i0.851.992.843 (3)177
N1—H1⋯O10.891.852.741 (3)176
O1—H1B⋯N4ii0.851.942.787 (3)172

Symmetry codes: (i) ; (ii) .

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