Literature DB >> 22259417

N-(2,3,4-Trifluoro-phen-yl)morpholine-4-carboxamide.

Li Jie1, Pei Shuchen, Hai Li, Wu Yong.   

Abstract

In title mol-ecule, C(11)H(11)F(3)N(2)O(2), the central -N-C(=O)-N- unit is essentially planar [maximum deviation = 0.013 (2) Å] and forms a dihedral angle of 57.33 (9)° with the benzene ring. The morpholine ring is in a chair conformation. In the crystal, mol-ecules are linked into chains along [001] by N-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22259417      PMCID: PMC3254354          DOI: 10.1107/S1600536811051300

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to urea derivatives as anti­bacterial and anti­fungal agents, see: Zheng et al. (2010 ▶).

Experimental

Crystal data

C11H11F3N2O2 M = 260.22 Monoclinic, a = 7.8515 (4) Å b = 17.8264 (6) Å c = 8.6872 (4) Å β = 109.790 (5)° V = 1144.09 (8) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 293 K 0.40 × 0.35 × 0.30 mm

Data collection

Agilent Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.994, T max = 1.000 4250 measured reflections 2009 independent reflections 1587 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.103 S = 1.07 2009 reflections 167 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011) ▶; cell refinement: CrysAlis PRO ▶; data reduction: CrysAlis PRO ▶; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811051300/lh5385sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811051300/lh5385Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811051300/lh5385Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536811051300/lh5385Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H11F3N2O2F(000) = 536
Mr = 260.22Dx = 1.511 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.7107 Å
a = 7.8515 (4) ÅCell parameters from 1772 reflections
b = 17.8264 (6) Åθ = 3.0–29.1°
c = 8.6872 (4) ŵ = 0.14 mm1
β = 109.790 (5)°T = 293 K
V = 1144.09 (8) Å3Block, colorless
Z = 40.40 × 0.35 × 0.30 mm
Agilent Xcalibur Eos diffractometer2009 independent reflections
Radiation source: Enhance (Mo) X-ray Source1587 reflections with I > 2σ(I)
graphiteRint = 0.016
Detector resolution: 16.0874 pixels mm-1θmax = 25.0°, θmin = 3.0°
ω scansh = −7→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −13→21
Tmin = 0.994, Tmax = 1.000l = −10→7
4250 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.044P)2 + 0.1807P] where P = (Fo2 + 2Fc2)/3
2009 reflections(Δ/σ)max < 0.001
167 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.88764 (17)0.67437 (6)0.52547 (15)0.0574 (4)
F21.12312 (17)0.76456 (7)0.45200 (16)0.0681 (4)
F31.11974 (18)0.91342 (7)0.50200 (18)0.0764 (4)
O10.2304 (2)0.51651 (8)0.66738 (18)0.0617 (4)
O20.50780 (18)0.68346 (7)0.37155 (14)0.0427 (4)
N10.6148 (2)0.73140 (8)0.63043 (18)0.0384 (4)
N20.4106 (2)0.63276 (8)0.56564 (16)0.0370 (4)
C10.8741 (3)0.74877 (10)0.5421 (2)0.0380 (4)
C20.9976 (3)0.79446 (11)0.5078 (2)0.0434 (5)
C30.9947 (3)0.87006 (11)0.5337 (2)0.0469 (5)
C40.8722 (3)0.90070 (11)0.5949 (2)0.0471 (5)
H40.87390.95190.61590.057*
C50.7451 (3)0.85485 (10)0.6255 (2)0.0397 (5)
H50.66040.87570.66620.048*
C60.7420 (2)0.77841 (9)0.59651 (19)0.0331 (4)
C70.5081 (2)0.68272 (9)0.5135 (2)0.0328 (4)
C80.2658 (3)0.59059 (10)0.4469 (2)0.0422 (5)
H8A0.29090.58650.34520.051*
H8B0.15230.61730.42440.051*
C90.2489 (3)0.51341 (11)0.5100 (3)0.0546 (6)
H9A0.14420.48850.43420.065*
H9B0.35530.48420.51650.065*
C100.3837 (3)0.55182 (12)0.7792 (2)0.0587 (6)
H10A0.49160.52400.78410.070*
H10B0.37350.55120.88740.070*
C110.4023 (3)0.63175 (11)0.7304 (2)0.0484 (5)
H11A0.29960.66100.73400.058*
H11B0.51150.65380.80630.058*
H10.576 (3)0.7459 (10)0.705 (2)0.039 (5)*
U11U22U33U12U13U23
F10.0633 (8)0.0337 (6)0.0872 (9)0.0021 (5)0.0412 (7)−0.0068 (6)
F20.0613 (8)0.0643 (8)0.1001 (10)0.0016 (6)0.0552 (8)−0.0071 (7)
F30.0789 (10)0.0583 (8)0.1138 (11)−0.0191 (7)0.0613 (9)0.0059 (7)
O10.0655 (10)0.0587 (10)0.0722 (10)−0.0197 (8)0.0380 (9)0.0057 (8)
O20.0571 (9)0.0439 (8)0.0345 (7)−0.0081 (6)0.0253 (6)−0.0018 (5)
N10.0493 (10)0.0379 (9)0.0361 (8)−0.0088 (7)0.0252 (8)−0.0071 (7)
N20.0437 (9)0.0384 (8)0.0333 (8)−0.0090 (7)0.0188 (7)0.0005 (6)
C10.0448 (11)0.0291 (9)0.0438 (10)0.0012 (8)0.0199 (9)−0.0017 (8)
C20.0428 (11)0.0460 (12)0.0497 (11)0.0019 (9)0.0266 (9)−0.0013 (9)
C30.0494 (12)0.0427 (11)0.0549 (12)−0.0112 (10)0.0259 (10)0.0050 (9)
C40.0572 (13)0.0308 (10)0.0576 (12)−0.0045 (9)0.0252 (11)−0.0012 (9)
C50.0449 (11)0.0349 (10)0.0435 (10)0.0010 (9)0.0206 (9)−0.0045 (8)
C60.0398 (10)0.0326 (9)0.0294 (8)−0.0031 (8)0.0150 (8)−0.0008 (7)
C70.0379 (10)0.0300 (9)0.0338 (9)0.0033 (8)0.0165 (8)0.0014 (7)
C80.0408 (11)0.0433 (11)0.0449 (11)−0.0065 (9)0.0177 (9)−0.0050 (9)
C90.0563 (14)0.0431 (12)0.0725 (14)−0.0106 (10)0.0326 (12)−0.0082 (10)
C100.0637 (15)0.0638 (14)0.0549 (13)−0.0065 (12)0.0283 (12)0.0179 (11)
C110.0588 (13)0.0536 (12)0.0389 (10)−0.0124 (10)0.0247 (9)0.0023 (9)
F1—C11.342 (2)C3—C41.361 (3)
F2—C21.347 (2)C4—H40.9300
F3—C31.349 (2)C4—C51.383 (3)
O1—C91.424 (2)C5—H50.9300
O1—C101.413 (3)C5—C61.384 (2)
O2—C71.232 (2)C8—H8A0.9700
N1—C61.409 (2)C8—H8B0.9700
N1—C71.383 (2)C8—C91.504 (3)
N1—H10.843 (18)C9—H9A0.9700
N2—C71.349 (2)C9—H9B0.9700
N2—C81.459 (2)C10—H10A0.9700
N2—C111.455 (2)C10—H10B0.9700
C1—C21.374 (3)C10—C111.508 (3)
C1—C61.382 (2)C11—H11A0.9700
C2—C31.368 (3)C11—H11B0.9700
C10—O1—C9109.68 (15)O2—C7—N2122.31 (16)
C6—N1—H1116.2 (13)N2—C7—N1116.05 (15)
C7—N1—C6121.05 (14)N2—C8—H8A109.5
C7—N1—H1118.2 (13)N2—C8—H8B109.5
C7—N2—C8119.83 (14)N2—C8—C9110.94 (15)
C7—N2—C11123.95 (15)H8A—C8—H8B108.0
C11—N2—C8113.93 (15)C9—C8—H8A109.5
F1—C1—C2118.37 (17)C9—C8—H8B109.5
F1—C1—C6120.70 (16)O1—C9—C8111.42 (17)
C2—C1—C6120.91 (17)O1—C9—H9A109.3
F2—C2—C1119.96 (17)O1—C9—H9B109.3
F2—C2—C3120.24 (18)C8—C9—H9A109.3
C3—C2—C1119.78 (18)C8—C9—H9B109.3
F3—C3—C2118.52 (18)H9A—C9—H9B108.0
F3—C3—C4120.61 (18)O1—C10—H10A109.3
C4—C3—C2120.83 (18)O1—C10—H10B109.3
C3—C4—H4120.4O1—C10—C11111.65 (17)
C3—C4—C5119.28 (18)H10A—C10—H10B108.0
C5—C4—H4120.4C11—C10—H10A109.3
C4—C5—H5119.5C11—C10—H10B109.3
C4—C5—C6121.08 (18)N2—C11—C10109.20 (16)
C6—C5—H5119.5N2—C11—H11A109.8
C1—C6—N1120.74 (15)N2—C11—H11B109.8
C1—C6—C5117.99 (17)C10—C11—H11A109.8
C5—C6—N1121.17 (16)C10—C11—H11B109.8
O2—C7—N1121.59 (16)H11A—C11—H11B108.3
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.843 (18)2.120 (19)2.9306 (19)161.2 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.843 (18)2.120 (19)2.9306 (19)161.2 (17)

Symmetry code: (i) .

  3 in total

1.  Synthesis of some N-alkyl substituted urea derivatives as antibacterial and antifungal agents.

Authors:  Qing-Zhong Zheng; Kui Cheng; Xiao-Min Zhang; Kai Liu; Qing-Cai Jiao; Hai-Liang Zhu
Journal:  Eur J Med Chem       Date:  2010-03-25       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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