Literature DB >> 22259382

cis-Bis(4-methyl-piperazine-1-carbo-dithio-ato-κS,S')bis-(pyridine-κN)cadmium.

P Valarmathi, S Thirumaran, Kamini Kapoor, Vivek K Gupta, Rajni Kant.   

Abstract

In the title complex, [Cd(C(6)n class="Species">H(11)N(2)S(2))(2)(C(5)H(5)N)(2)], the Cd(II) ion is hexa-coordinated by two N atoms from two pyridine ligands and by four S atoms from two dithio-carbamate ligands in a distorted octa-hedral geometry. The Cd(II) ion lies on a twofold axis. The piperazine ring is in chair conformation and its least-squares plane makes a dihedral angle of 81.4 (1)° with that of the pyridine ring.

Entities:  

Year:  2011        PMID: 22259382      PMCID: PMC3254348          DOI: 10.1107/S1600536811054791

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and applications of dithio­carbamates, see: Bessergenev et al. (1997 ▶); Havel (1975 ▶); Valarmathi et al. (2011 ▶); Pickett & O’Brien (2001 ▶). For related structures, see: Ivanov et al. (2006 ▶); Onwudiwe & Ajibade (2010 ▶); Yin et al. (2004 ▶).

Experimental

Crystal data

[Cd(C6n class="Species">H11N2S2)2(C5H5N)2] M = 621.18 Monoclinic, a = 17.7065 (7) Å b = 8.7806 (6) Å c = 20.6171 (8) Å β = 122.276 (5)° V = 2710.1 (2) Å3 Z = 4 Mo Kα radiation μ = 1.14 mm−1 T = 293 K 0.3 × 0.2 × 0.2 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.645, T max = 1.000 24135 measured reflections 2383 independent reflections 2088 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.057 S = 1.07 2383 reflections 151 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis n class="Disease">RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and PARST (Nardelli, 1995 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811054791/nc2258sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054791/nc2258Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C6H11N2S2)2(C5H5N)2]F(000) = 1272
Mr = 621.18Dx = 1.522 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 11642 reflections
a = 17.7065 (7) Åθ = 3.5–29.1°
b = 8.7806 (6) ŵ = 1.14 mm1
c = 20.6171 (8) ÅT = 293 K
β = 122.276 (5)°Block, white
V = 2710.1 (2) Å30.3 × 0.2 × 0.2 mm
Z = 4
Oxford Diffraction Xcalibur Sapphire3 diffractometer2383 independent reflections
Radiation source: fine-focus sealed tube2088 reflections with I > 2σ(I)
graphiteRint = 0.047
Detector resolution: 16.1049 pixels mm-1θmax = 25.0°, θmin = 3.8°
ω scansh = −20→20
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −10→10
Tmin = 0.645, Tmax = 1.000l = −24→24
24135 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.057H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0157P)2 + 4.0129P] where P = (Fo2 + 2Fc2)/3
2383 reflections(Δ/σ)max < 0.001
151 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.30 e Å3
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.00000.14900 (3)0.25000.04703 (10)
S10.08961 (5)0.12653 (8)0.17998 (4)0.05259 (19)
S2−0.07368 (5)−0.05272 (9)0.13462 (4)0.0550 (2)
C10.01848 (16)−0.0220 (3)0.12909 (13)0.0415 (6)
N20.03409 (14)−0.1100 (3)0.08483 (12)0.0472 (5)
C3−0.01499 (18)−0.2496 (3)0.04814 (16)0.0552 (7)
H3A−0.0316−0.2518−0.00490.066*
H3B−0.0692−0.25320.04900.066*
C40.04322 (18)−0.3850 (3)0.09059 (16)0.0537 (7)
H4A0.0569−0.38490.14280.064*
H4B0.0109−0.47800.06600.064*
N50.12635 (14)−0.3821 (3)0.09173 (12)0.0486 (5)
C60.17350 (18)−0.2393 (3)0.12557 (16)0.0535 (7)
H6A0.2272−0.23610.12390.064*
H6B0.1913−0.23540.17890.064*
C70.11636 (19)−0.1028 (3)0.08401 (17)0.0552 (7)
H7A0.1487−0.01010.10890.066*
H7B0.1018−0.10190.03150.066*
C80.1830 (2)−0.5113 (4)0.13378 (18)0.0658 (8)
H8A0.2363−0.50780.13230.099*
H8B0.1514−0.60420.11070.099*
H8C0.1988−0.50700.18610.099*
N9−0.09469 (14)0.3546 (3)0.16984 (11)0.0476 (5)
C10−0.13114 (18)0.3577 (4)0.09431 (15)0.0561 (7)
H10−0.11660.28080.07180.067*
C11−0.1891 (2)0.4693 (4)0.04841 (17)0.0701 (9)
H11−0.21410.4665−0.00430.084*
C12−0.2098 (2)0.5841 (4)0.0804 (2)0.0707 (9)
H12−0.24920.66080.05010.085*
C13−0.1715 (2)0.5845 (4)0.1582 (2)0.0702 (9)
H13−0.18330.66250.18210.084*
C14−0.1153 (2)0.4675 (4)0.20016 (17)0.0625 (8)
H14−0.09020.46740.25290.075*
U11U22U33U12U13U23
Cd10.05092 (17)0.05401 (19)0.03837 (15)0.0000.02532 (13)0.000
S10.0537 (4)0.0546 (4)0.0574 (4)−0.0160 (3)0.0350 (4)−0.0129 (3)
S20.0477 (4)0.0652 (5)0.0606 (4)−0.0153 (3)0.0346 (4)−0.0175 (4)
C10.0434 (14)0.0443 (15)0.0351 (13)0.0004 (12)0.0198 (11)0.0044 (11)
N20.0480 (12)0.0535 (14)0.0487 (12)−0.0072 (10)0.0317 (11)−0.0095 (10)
C30.0494 (16)0.066 (2)0.0482 (16)−0.0072 (14)0.0247 (14)−0.0184 (14)
C40.0593 (17)0.0576 (18)0.0497 (16)−0.0190 (14)0.0330 (14)−0.0141 (13)
N50.0534 (13)0.0503 (14)0.0459 (12)−0.0031 (11)0.0291 (11)−0.0021 (10)
C60.0502 (16)0.0602 (18)0.0599 (17)−0.0077 (14)0.0360 (14)−0.0033 (15)
C70.0668 (18)0.0536 (17)0.0679 (19)−0.0057 (14)0.0511 (16)−0.0017 (14)
C80.0697 (19)0.060 (2)0.0642 (19)0.0003 (16)0.0330 (16)0.0036 (16)
N90.0469 (12)0.0577 (14)0.0362 (11)0.0016 (11)0.0208 (10)−0.0025 (11)
C100.0576 (17)0.072 (2)0.0430 (15)−0.0001 (16)0.0295 (14)−0.0007 (15)
C110.065 (2)0.096 (3)0.0455 (17)0.0059 (19)0.0269 (16)0.0226 (18)
C120.0588 (19)0.072 (2)0.081 (2)0.0091 (17)0.0365 (18)0.034 (2)
C130.078 (2)0.0545 (19)0.080 (2)0.0082 (17)0.0436 (19)0.0018 (17)
C140.071 (2)0.063 (2)0.0449 (16)0.0074 (16)0.0251 (15)−0.0054 (15)
Cd1—N9i2.417 (2)C6—C71.506 (4)
Cd1—N92.417 (2)C6—H6A0.9700
Cd1—S1i2.6621 (7)C6—H6B0.9700
Cd1—S12.6621 (7)C7—H7A0.9700
Cd1—S22.6803 (7)C7—H7B0.9700
Cd1—S2i2.6803 (7)C8—H8A0.9600
S1—C11.725 (3)C8—H8B0.9600
S2—C11.717 (2)C8—H8C0.9600
C1—N21.333 (3)N9—C141.323 (3)
N2—C31.459 (3)N9—C101.330 (3)
N2—C71.467 (3)C10—C111.368 (4)
C3—C41.510 (4)C10—H100.9300
C3—H3A0.9700C11—C121.359 (5)
C3—H3B0.9700C11—H110.9300
C4—N51.460 (3)C12—C131.368 (4)
C4—H4A0.9700C12—H120.9300
C4—H4B0.9700C13—C141.369 (4)
N5—C81.455 (4)C13—H130.9300
N5—C61.460 (3)C14—H140.9300
N9i—Cd1—N983.36 (10)C4—N5—C6109.7 (2)
N9i—Cd1—S1i94.66 (5)N5—C6—C7111.9 (2)
N9—Cd1—S1i91.69 (5)N5—C6—H6A109.2
N9i—Cd1—S191.69 (5)C7—C6—H6A109.2
N9—Cd1—S194.66 (5)N5—C6—H6B109.2
S1i—Cd1—S1171.50 (3)C7—C6—H6B109.2
N9i—Cd1—S2158.69 (5)H6A—C6—H6B107.9
N9—Cd1—S293.18 (5)N2—C7—C6109.2 (2)
S1i—Cd1—S2106.48 (2)N2—C7—H7A109.8
S1—Cd1—S267.56 (2)C6—C7—H7A109.8
N9i—Cd1—S2i93.18 (5)N2—C7—H7B109.8
N9—Cd1—S2i158.69 (5)C6—C7—H7B109.8
S1i—Cd1—S2i67.56 (2)H7A—C7—H7B108.3
S1—Cd1—S2i106.48 (2)N5—C8—H8A109.5
S2—Cd1—S2i97.27 (4)N5—C8—H8B109.5
C1—S1—Cd186.15 (8)H8A—C8—H8B109.5
C1—S2—Cd185.73 (9)N5—C8—H8C109.5
N2—C1—S2120.42 (19)H8A—C8—H8C109.5
N2—C1—S1120.25 (18)H8B—C8—H8C109.5
S2—C1—S1119.31 (15)C14—N9—C10117.0 (2)
C1—N2—C3123.9 (2)C14—N9—Cd1120.15 (18)
C1—N2—C7123.6 (2)C10—N9—Cd1122.80 (19)
C3—N2—C7110.5 (2)N9—C10—C11122.7 (3)
N2—C3—C4109.1 (2)N9—C10—H10118.6
N2—C3—H3A109.9C11—C10—H10118.6
C4—C3—H3A109.9C12—C11—C10119.5 (3)
N2—C3—H3B109.9C12—C11—H11120.2
C4—C3—H3B109.9C10—C11—H11120.2
H3A—C3—H3B108.3C11—C12—C13118.5 (3)
N5—C4—C3111.5 (2)C11—C12—H12120.7
N5—C4—H4A109.3C13—C12—H12120.7
C3—C4—H4A109.3C12—C13—C14118.5 (3)
N5—C4—H4B109.3C12—C13—H13120.8
C3—C4—H4B109.3C14—C13—H13120.8
H4A—C4—H4B108.0N9—C14—C13123.7 (3)
C8—N5—C4111.4 (2)N9—C14—H14118.2
C8—N5—C6110.4 (2)C13—C14—H14118.2
N9i—Cd1—S1—C1178.45 (10)C8—N5—C6—C7−179.3 (2)
N9—Cd1—S1—C1−98.07 (10)C4—N5—C6—C7−56.2 (3)
S1i—Cd1—S1—C140.12 (8)C1—N2—C7—C6105.6 (3)
S2—Cd1—S1—C1−6.55 (8)C3—N2—C7—C6−59.0 (3)
S2i—Cd1—S1—C184.63 (9)N5—C6—C7—N257.5 (3)
N9i—Cd1—S2—C120.45 (18)N9i—Cd1—N9—C14−49.4 (2)
N9—Cd1—S2—C1100.31 (10)S1i—Cd1—N9—C1445.1 (2)
S1i—Cd1—S2—C1−166.98 (8)S1—Cd1—N9—C14−140.6 (2)
S1—Cd1—S2—C16.58 (8)S2—Cd1—N9—C14151.7 (2)
S2i—Cd1—S2—C1−98.30 (9)S2i—Cd1—N9—C1432.3 (3)
Cd1—S2—C1—N2170.5 (2)N9i—Cd1—N9—C10133.4 (2)
Cd1—S2—C1—S1−10.81 (13)S1i—Cd1—N9—C10−132.1 (2)
Cd1—S1—C1—N2−170.4 (2)S1—Cd1—N9—C1042.2 (2)
Cd1—S1—C1—S210.87 (14)S2—Cd1—N9—C10−25.5 (2)
S2—C1—N2—C3−9.9 (3)S2i—Cd1—N9—C10−144.91 (17)
S1—C1—N2—C3171.4 (2)C14—N9—C10—C11−1.4 (4)
S2—C1—N2—C7−172.5 (2)Cd1—N9—C10—C11175.9 (2)
S1—C1—N2—C78.8 (3)N9—C10—C11—C121.2 (5)
C1—N2—C3—C4−105.1 (3)C10—C11—C12—C130.2 (5)
C7—N2—C3—C459.5 (3)C11—C12—C13—C14−1.3 (5)
N2—C3—C4—N5−58.5 (3)C10—N9—C14—C130.3 (4)
C3—C4—N5—C8179.0 (2)Cd1—N9—C14—C13−177.1 (2)
C3—C4—N5—C656.5 (3)C12—C13—C14—N91.1 (5)
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