Literature DB >> 22259346

Diaqua-bis-(4-hy-droxy-5-nitro-pyridine-2-carboxyl-ato-κN,O)copper(II).

Fengjuan Shi1, Jiguang Deng, Hongxing Dai.   

Abstract

In the title compound, [Cu(C(6)H(3)N(2)O(5))(2)(H(2)O)(2)], the Cu(II) ion, lying on an inversion center, is coordinated by two pyridine N atoms and two carboxyl-ate O atoms from symmetry-related two 4-hy-droxy-5-nitro-pyridine-2-carboxyl-ate ligands, and two water mol-ecules, forming a distorted octa-hedral geometry. In the crystal, O-H⋯O hydrogen bonds link the complex mol-ecules. One of the H atoms of the water mol-ecule is disordered over two sites of equal occupancy.

Entities:  

Year:  2011        PMID: 22259346      PMCID: PMC3254315          DOI: 10.1107/S1600536811052949

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For complexes based on the 4-hy­droxy­lpyridine-2,6-dicarb­oxy­lic acid ligand, see: Zhao et al. (2006 ▶, 2009 ▶, 2011 ▶). For a similar reaction to the formation of the ligand, see: Xu et al. (2011 ▶).

Experimental

Crystal data

[Cu(C6H3N2O5)2(H2O)2] M = 465.79 Monoclinic, a = 6.5327 (7) Å b = 9.7963 (10) Å c = 12.2562 (12) Å β = 102.86 (2)° V = 764.68 (15) Å3 Z = 2 Mo Kα radiation μ = 1.52 mm−1 T = 113 K 0.20 × 0.18 × 0.10 mm

Data collection

Rigaku Saturn 724 CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.752, T max = 0.863 9563 measured reflections 1829 independent reflections 1466 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.077 S = 1.04 1829 reflections 149 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.49 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global. DOI: 10.1107/S1600536811052949/hy2493sup1.cif Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C6H3N2O5)2(H2O)2]F(000) = 470
Mr = 465.79Dx = 2.023 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3085 reflections
a = 6.5327 (7) Åθ = 2.1–27.9°
b = 9.7963 (10) ŵ = 1.52 mm1
c = 12.2562 (12) ÅT = 113 K
β = 102.86 (2)°Prism, colorless
V = 764.68 (15) Å30.20 × 0.18 × 0.10 mm
Z = 2
Rigaku Saturn 724 CCD diffractometer1829 independent reflections
Radiation source: rotating anode1466 reflections with I > 2σ(I)
multilayerRint = 0.053
Detector resolution: 14.22 pixels mm-1θmax = 27.9°, θmin = 2.7°
ω scansh = −8→7
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −12→12
Tmin = 0.752, Tmax = 0.863l = −15→16
9563 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.036P)2] where P = (Fo2 + 2Fc2)/3
1829 reflections(Δ/σ)max < 0.001
149 parametersΔρmax = 0.39 e Å3
6 restraintsΔρmin = −0.49 e Å3
Experimental. Rigaku CrystalClear-SM Expert 2.0 r2
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.00000.50000.50000.01573 (13)
O10.0540 (2)0.53885 (14)0.66132 (12)0.0145 (3)
O20.1475 (2)0.70789 (14)0.78407 (11)0.0150 (3)
O30.3093 (2)1.08681 (14)0.52856 (13)0.0144 (3)
H30.331 (5)1.107 (3)0.592 (2)0.058 (11)*
O40.2830 (3)1.07679 (17)0.31323 (14)0.0291 (4)
O50.0819 (3)0.9216 (2)0.22215 (13)0.0408 (5)
O60.3578 (3)0.40247 (18)0.52615 (15)0.0253 (4)
H6A0.371 (5)0.381 (3)0.5936 (10)0.060 (11)*
H6B0.454 (7)0.455 (5)0.516 (3)0.06 (2)*0.50
H6C0.348 (10)0.332 (3)0.484 (3)0.09 (3)*0.50
N10.1030 (3)0.68775 (16)0.49202 (13)0.0113 (4)
C10.1142 (3)0.6591 (2)0.68823 (16)0.0121 (4)
C20.1493 (3)0.7498 (2)0.59364 (16)0.0108 (4)
C30.2222 (3)0.8799 (2)0.61022 (16)0.0109 (4)
H3A0.25760.91690.68370.013*
C40.2450 (3)0.9596 (2)0.51800 (17)0.0106 (4)
C50.1881 (3)0.8957 (2)0.41301 (16)0.0114 (4)
C60.1219 (3)0.7610 (2)0.40323 (16)0.0119 (4)
H60.08910.71970.33130.014*
N20.1874 (3)0.97025 (17)0.30795 (15)0.0150 (4)
U11U22U33U12U13U23
Cu10.0276 (2)0.00876 (18)0.0110 (2)−0.00692 (15)0.00460 (15)−0.00212 (14)
O10.0212 (8)0.0095 (7)0.0123 (8)−0.0040 (6)0.0028 (6)0.0002 (5)
O20.0251 (8)0.0103 (7)0.0088 (7)−0.0004 (6)0.0021 (6)−0.0006 (6)
O30.0201 (8)0.0090 (7)0.0146 (8)−0.0040 (6)0.0052 (7)−0.0001 (6)
O40.0442 (11)0.0199 (9)0.0253 (9)−0.0091 (8)0.0124 (8)0.0029 (7)
O50.0523 (13)0.0497 (12)0.0151 (9)−0.0240 (10)−0.0036 (9)0.0070 (8)
O60.0271 (10)0.0238 (9)0.0234 (10)−0.0057 (8)0.0019 (8)0.0029 (8)
N10.0125 (9)0.0104 (8)0.0100 (8)−0.0010 (7)0.0004 (7)−0.0013 (6)
C10.0107 (10)0.0107 (10)0.0149 (11)0.0005 (8)0.0027 (8)0.0031 (8)
C20.0123 (10)0.0102 (9)0.0091 (10)0.0006 (8)0.0006 (8)0.0012 (7)
C30.0109 (10)0.0116 (10)0.0093 (10)0.0000 (8)0.0007 (8)−0.0011 (7)
C40.0077 (9)0.0100 (9)0.0145 (10)0.0007 (7)0.0030 (8)−0.0003 (7)
C50.0104 (10)0.0139 (10)0.0105 (10)−0.0004 (8)0.0034 (8)0.0030 (8)
C60.0117 (11)0.0149 (10)0.0099 (10)−0.0002 (8)0.0036 (8)−0.0028 (8)
N20.0150 (9)0.0165 (9)0.0136 (9)−0.0015 (7)0.0033 (8)0.0011 (7)
Cu1—N11.9685 (16)O6—H6C0.85 (1)
Cu1—O11.9667 (15)N1—C61.332 (2)
Cu1—O62.479 (2)N1—C21.358 (2)
O1—C11.263 (2)C1—C21.518 (3)
O2—C11.242 (2)C2—C31.360 (3)
O3—C41.312 (2)C3—C41.409 (3)
O3—H30.79 (3)C3—H3A0.9500
O4—N21.211 (2)C4—C51.405 (3)
O5—N21.219 (2)C5—C61.385 (3)
O6—H6A0.84 (1)C5—N21.480 (2)
O6—H6B0.85 (1)C6—H60.9500
O1—Cu1—O1i180.0O2—C1—C2118.24 (17)
O1—Cu1—N183.24 (6)O1—C1—C2115.97 (17)
O1i—Cu1—N196.76 (6)N1—C2—C3123.75 (18)
O1—Cu1—N1i96.76 (6)N1—C2—C1113.45 (17)
O1i—Cu1—N1i83.24 (6)C3—C2—C1122.80 (18)
N1—Cu1—N1i180.0C2—C3—C4119.73 (18)
O1—Cu1—O689.52 (6)C2—C3—H3A120.1
O1—Cu1—O6i90.48 (6)C4—C3—H3A120.1
N1—Cu1—O6i87.50 (7)O3—C4—C5121.85 (18)
O6—Cu1—N192.50 (7)O3—C4—C3122.42 (18)
O6—Cu1—O6i180.00C5—C4—C3115.70 (18)
C1—O1—Cu1114.76 (13)C6—C5—C4121.20 (18)
C4—O3—H3109 (2)C6—C5—N2117.04 (17)
H6A—O6—H6B112.7 (17)C4—C5—N2121.71 (17)
H6A—O6—H6C111.5 (17)N1—C6—C5121.74 (18)
H6B—O6—H6C111.2 (17)N1—C6—H6119.1
C6—N1—C2117.79 (17)C5—C6—H6119.1
C6—N1—Cu1129.69 (14)O4—N2—O5124.71 (18)
C2—N1—Cu1112.42 (13)O4—N2—C5118.54 (17)
O2—C1—O1125.79 (19)O5—N2—C5116.68 (17)
N1—Cu1—O1—C13.72 (14)N1—C2—C3—C42.6 (3)
N1i—Cu1—O1—C1−176.28 (14)C1—C2—C3—C4−178.09 (18)
O1—Cu1—N1—C6−178.60 (18)C2—C3—C4—O3178.19 (18)
O1i—Cu1—N1—C61.40 (18)C2—C3—C4—C50.1 (3)
O1—Cu1—N1—C2−2.41 (13)O3—C4—C5—C6179.52 (18)
O1i—Cu1—N1—C2177.59 (13)C3—C4—C5—C6−2.4 (3)
Cu1—O1—C1—O2176.32 (16)O3—C4—C5—N2−3.1 (3)
Cu1—O1—C1—C2−4.1 (2)C3—C4—C5—N2175.00 (17)
C6—N1—C2—C3−3.0 (3)C2—N1—C6—C50.5 (3)
Cu1—N1—C2—C3−179.66 (16)Cu1—N1—C6—C5176.56 (14)
C6—N1—C2—C1177.69 (16)C4—C5—C6—N12.1 (3)
Cu1—N1—C2—C11.0 (2)N2—C5—C6—N1−175.38 (17)
O2—C1—C2—N1−178.33 (17)C6—C5—N2—O4−165.03 (19)
O1—C1—C2—N12.1 (3)C4—C5—N2—O417.5 (3)
O2—C1—C2—C32.3 (3)C6—C5—N2—O518.0 (3)
O1—C1—C2—C3−177.27 (18)C4—C5—N2—O5−159.5 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2ii0.79 (3)1.79 (3)2.544 (2)160 (3)
O6—H6A···O2iii0.84 (1)2.28 (2)3.014 (2)146 (3)
O6—H6B···O6iv0.85 (1)2.00 (1)2.836 (3)170 (5)
O6—H6C···O3v0.85 (1)2.49 (3)3.109 (2)130 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O2i0.79 (3)1.79 (3)2.544 (2)160 (3)
O6—H6A⋯O2ii0.84 (1)2.28 (2)3.014 (2)146 (3)
O6—H6B⋯O6iii0.85 (1)2.00 (1)2.836 (3)170 (5)
O6—H6C⋯O3iv0.85 (1)2.49 (3)3.109 (2)130 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  Investigation on structures, luminescent and magnetic properties of Ln(III)-M (M = Fe(II)(HS), Co(II)) coordination polymers.

Authors:  Xiao-Qing Zhao; Ping Cui; Bin Zhao; Wei Shi; Peng Cheng
Journal:  Dalton Trans       Date:  2010-12-13       Impact factor: 4.390

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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