Literature DB >> 22259339

Poly[[{μ(3)-dihydrogen [(pyridin-4-yl-methyl-imino)-bis-(methyl-ene)]diphos-phon-ato-κO:O',N,O'':N'}copper(II)] dihydrate].

Shi-Yong Zhang1, Zhong-Gao Zhou, Ke-Jun Wang.   

Abstract

In the title polymer, {[Cu(C(8)H(12)N(2)O(6)P(2))]·2H(2)O}(n), the geometry of the five-coordinate Cu(II) ion can best be described as slightly distorted square-pyramidal formed by one N and two O atoms of an N(CH(2)PO(3)H)(2) group and one N atom from a pyridine ring. The elongated apex of the pyramid is occupied by one O atom from a third diphospho-nate ligand. The inter-connection of Cu(2+) ions by the diphospho-nate ligands results in the formation of a double-chain array along the b axis, in which the two sub-chains are inter-locked by pairs of PO(3) groups. The outside of each sub-chain is decorated by other PO(3) groups. These double chains are further assembled into a three-dimensional supra-molecular architecture via a large number of O-H⋯O hydrogen bonds between the phospho-nate groups and lattice water mol-ecules.

Entities:  

Year:  2011        PMID: 22259339      PMCID: PMC3254309          DOI: 10.1107/S1600536811052512

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to metal phospho­nate chemistry, see: Maeda (2004 ▶); Mao (2007 ▶); Shimizu et al. (2009 ▶). For the synthetic strategy of attaching functional groups to a phospho­nic acid ligand, see: Drumel et al. (1995 ▶); Mao et al. (2002 ▶); Liang & Shimizu (2007 ▶); Du et al. (2006 ▶, 2010b ▶). For a structurally related complex, see: Song & Mao (2005 ▶). For the zwitterionic behavior of amino­phospho­nic acid, see: Yang et al. (2008 ▶); Du et al. (2009 ▶, 2010a ▶).

Experimental

Crystal data

[Cu(C8H12N2O6P2)]·2H2O M = 393.71 Triclinic, a = 8.9250 (3) Å b = 9.0000 (3) Å c = 10.5066 (3) Å α = 75.648 (2)° β = 67.124 (2)° γ = 67.126 (2)° V = 711.75 (4) Å3 Z = 2 Mo Kα radiation μ = 1.80 mm−1 T = 296 K 0.40 × 0.03 × 0.02 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.605, T max = 0.746 7659 measured reflections 3267 independent reflections 2309 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.118 S = 1.03 3267 reflections 202 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.60 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811052512/fj2483sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052512/fj2483Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C8H12N2O6P2)]·2H2OZ = 2
Mr = 393.71F(000) = 402
Triclinic, P1Dx = 1.837 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9250 (3) ÅCell parameters from 1430 reflections
b = 9.0000 (3) Åθ = 2.1–27.6°
c = 10.5066 (3) ŵ = 1.80 mm1
α = 75.648 (2)°T = 296 K
β = 67.124 (2)°Needle, blue
γ = 67.126 (2)°0.40 × 0.03 × 0.02 mm
V = 711.75 (4) Å3
Bruker APEXII CCD diffractometer3267 independent reflections
Radiation source: fine-focus sealed tube2309 reflections with I > 2σ(I)
graphiteRint = 0.043
phi and ω scansθmax = 27.6°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −10→11
Tmin = 0.605, Tmax = 0.746k = −11→11
7659 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.055P)2 + 0.1702P] where P = (Fo2 + 2Fc2)/3
3267 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.50 e Å3
6 restraintsΔρmin = −0.60 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.47006 (6)0.60143 (5)0.25556 (5)0.02485 (17)
P10.69833 (14)0.32696 (12)0.39341 (11)0.0237 (2)
P20.17163 (14)0.57368 (13)0.21239 (12)0.0265 (3)
N10.5076 (4)−0.1825 (4)0.2025 (3)0.0240 (7)
N20.4396 (4)0.3746 (4)0.2980 (3)0.0207 (7)
C10.3823 (5)−0.0485 (5)0.1777 (4)0.0282 (9)
H1A0.2869−0.05900.16960.034*
C20.3912 (5)0.1042 (5)0.1641 (4)0.0293 (10)
H2A0.30250.19450.14570.035*
C30.5301 (5)0.1261 (4)0.1773 (4)0.0233 (9)
C40.6596 (6)−0.0148 (5)0.1992 (4)0.0294 (9)
H4A0.7570−0.00760.20650.035*
C50.6465 (5)−0.1652 (5)0.2102 (4)0.0273 (9)
H5A0.7364−0.25750.22330.033*
C60.5389 (5)0.2920 (4)0.1674 (4)0.0243 (9)
H6A0.49640.36070.09330.029*
H6B0.65870.28310.14120.029*
C70.5053 (5)0.2840 (5)0.4152 (4)0.0235 (9)
H7A0.53240.16840.41640.028*
H7B0.41790.31680.50290.028*
C80.2500 (5)0.4113 (5)0.3387 (4)0.0224 (8)
H8A0.19310.44540.43120.027*
H8B0.22550.31510.33910.027*
O10.8567 (4)0.1971 (3)0.3047 (3)0.0309 (7)
H1B0.90340.24230.23020.046*
O20.6750 (3)0.4935 (3)0.3111 (3)0.0278 (6)
O30.7175 (4)0.3101 (3)0.5319 (3)0.0307 (7)
O40.2907 (3)0.6731 (3)0.1706 (3)0.0273 (6)
O50.1664 (4)0.5097 (3)0.0961 (3)0.0356 (7)
O6−0.0163 (4)0.6712 (4)0.2955 (3)0.0393 (8)
H6C−0.01370.73340.33940.059*
O1W1.0256 (4)0.3000 (4)0.0716 (3)0.0381 (8)
H1WA1.065 (6)0.366 (5)0.078 (5)0.057*
H1WB0.964 (6)0.344 (5)0.021 (5)0.057*
O2W−0.0383 (5)0.8732 (4)0.4421 (4)0.0462 (9)
H2WA−0.037 (7)0.965 (4)0.397 (5)0.069*
H2WB0.053 (5)0.832 (6)0.464 (6)0.069*
U11U22U33U12U13U23
Cu10.0279 (3)0.0187 (3)0.0339 (3)−0.0064 (2)−0.0186 (2)−0.0011 (2)
P10.0258 (6)0.0185 (5)0.0290 (6)−0.0027 (4)−0.0154 (5)−0.0030 (4)
P20.0283 (6)0.0233 (5)0.0369 (6)−0.0077 (5)−0.0215 (5)−0.0020 (5)
N10.0277 (18)0.0195 (17)0.0268 (19)−0.0072 (14)−0.0117 (15)−0.0025 (14)
N20.0248 (17)0.0177 (16)0.0235 (17)−0.0068 (14)−0.0127 (15)−0.0014 (13)
C10.026 (2)0.023 (2)0.042 (3)−0.0039 (17)−0.018 (2)−0.0081 (19)
C20.030 (2)0.022 (2)0.040 (3)−0.0025 (18)−0.020 (2)−0.0054 (18)
C30.028 (2)0.0192 (19)0.023 (2)−0.0061 (17)−0.0087 (18)−0.0038 (16)
C40.031 (2)0.028 (2)0.034 (2)−0.0097 (19)−0.015 (2)−0.0042 (19)
C50.028 (2)0.0169 (19)0.039 (3)−0.0065 (17)−0.017 (2)−0.0003 (18)
C60.028 (2)0.022 (2)0.027 (2)−0.0063 (17)−0.0142 (18)−0.0024 (17)
C70.031 (2)0.0188 (19)0.023 (2)−0.0078 (17)−0.0125 (18)0.0005 (16)
C80.023 (2)0.022 (2)0.026 (2)−0.0100 (17)−0.0100 (18)−0.0025 (17)
O10.0302 (16)0.0228 (15)0.0335 (17)−0.0006 (13)−0.0123 (14)−0.0028 (13)
O20.0279 (16)0.0194 (14)0.0395 (17)−0.0054 (12)−0.0194 (14)0.0008 (13)
O30.0312 (17)0.0335 (16)0.0321 (17)−0.0054 (13)−0.0200 (14)−0.0043 (13)
O40.0315 (16)0.0234 (14)0.0367 (17)−0.0100 (12)−0.0243 (14)0.0038 (13)
O50.049 (2)0.0308 (16)0.0431 (19)−0.0148 (15)−0.0302 (16)−0.0026 (14)
O60.0290 (17)0.0360 (18)0.061 (2)−0.0048 (14)−0.0248 (16)−0.0111 (16)
O1W0.041 (2)0.0387 (19)0.042 (2)−0.0163 (16)−0.0204 (16)0.0014 (15)
O2W0.048 (2)0.0337 (19)0.061 (2)−0.0053 (17)−0.030 (2)−0.0057 (17)
Cu1—O21.949 (3)C2—C31.390 (5)
Cu1—O41.949 (2)C2—H2A0.9300
Cu1—N1i2.008 (3)C3—C41.385 (5)
Cu1—N22.080 (3)C3—C61.501 (5)
Cu1—O3ii2.315 (3)C4—C51.376 (5)
P1—O31.495 (3)C4—H4A0.9300
P1—O21.514 (3)C5—H5A0.9300
P1—O11.570 (3)C6—H6A0.9700
P1—C71.827 (4)C6—H6B0.9700
P2—O51.497 (3)C7—H7A0.9700
P2—O41.518 (3)C7—H7B0.9700
P2—O61.563 (3)C8—H8A0.9700
P2—C81.831 (4)C8—H8B0.9700
N1—C11.340 (5)O1—H1B0.8200
N1—C51.341 (5)O3—Cu1ii2.315 (3)
N1—Cu1iii2.008 (3)O6—H6C0.8200
N2—C71.489 (5)O1W—H1WA0.832 (19)
N2—C81.492 (5)O1W—H1WB0.836 (19)
N2—C61.507 (5)O2W—H2WA0.846 (19)
C1—C21.376 (6)O2W—H2WB0.848 (19)
C1—H1A0.9300
O2—Cu1—O4167.12 (11)C3—C2—H2A119.4
O2—Cu1—N1i93.65 (12)C4—C3—C2115.6 (3)
O4—Cu1—N1i92.92 (12)C4—C3—C6122.4 (4)
O2—Cu1—N286.48 (11)C2—C3—C6121.9 (3)
O4—Cu1—N286.29 (11)C5—C4—C3121.1 (4)
N1i—Cu1—N2176.50 (13)C5—C4—H4A119.4
O2—Cu1—O3ii96.97 (11)C3—C4—H4A119.4
O4—Cu1—O3ii94.37 (11)N1—C5—C4121.9 (4)
N1i—Cu1—O3ii87.53 (12)N1—C5—H5A119.0
N2—Cu1—O3ii95.93 (11)C4—C5—H5A119.0
O3—P1—O2116.53 (16)C3—C6—N2115.5 (3)
O3—P1—O1108.57 (16)C3—C6—H6A108.4
O2—P1—O1110.13 (17)N2—C6—H6A108.4
O3—P1—C7110.01 (18)C3—C6—H6B108.4
O2—P1—C7103.88 (16)N2—C6—H6B108.4
O1—P1—C7107.31 (17)H6A—C6—H6B107.5
O5—P2—O4115.75 (17)N2—C7—P1109.1 (3)
O5—P2—O6108.56 (17)N2—C7—H7A109.9
O4—P2—O6111.15 (16)P1—C7—H7A109.9
O5—P2—C8112.42 (17)N2—C7—H7B109.9
O4—P2—C8103.00 (16)P1—C7—H7B109.9
O6—P2—C8105.44 (18)H7A—C7—H7B108.3
C1—N1—C5118.3 (3)N2—C8—P2108.1 (3)
C1—N1—Cu1iii120.0 (3)N2—C8—H8A110.1
C5—N1—Cu1iii121.1 (3)P2—C8—H8A110.1
C7—N2—C8111.7 (3)N2—C8—H8B110.1
C7—N2—C6112.3 (3)P2—C8—H8B110.1
C8—N2—C6112.8 (3)H8A—C8—H8B108.4
C7—N2—Cu1107.6 (2)P1—O1—H1B109.5
C8—N2—Cu1104.3 (2)P1—O2—Cu1119.08 (16)
C6—N2—Cu1107.7 (2)P1—O3—Cu1ii133.88 (16)
N1—C1—C2121.7 (4)P2—O4—Cu1117.93 (16)
N1—C1—H1A119.1P2—O6—H6C109.5
C2—C1—H1A119.1H1WA—O1W—H1WB109 (4)
C1—C2—C3121.3 (4)H2WA—O2W—H2WB107 (4)
C1—C2—H2A119.4
D—H···AD—HH···AD···AD—H···A
O1—H1B···O1W0.821.682.494 (4)169
O6—H6C···O2W0.821.752.567 (5)172
O1W—H1WA···O5iv0.83 (2)1.92 (2)2.746 (4)177 (5)
O1W—H1WB···O5v0.84 (2)1.93 (2)2.747 (4)167 (5)
O2W—H2WA···O1vi0.85 (2)2.09 (3)2.882 (4)155 (5)
O2W—H2WB···O3ii0.85 (2)1.96 (3)2.776 (4)161 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1B⋯O1W0.821.682.494 (4)169
O6—H6C⋯O2W0.821.752.567 (5)172
O1W—H1WA⋯O5i0.83 (2)1.92 (2)2.746 (4)177 (5)
O1W—H1WB⋯O5ii0.84 (2)1.93 (2)2.747 (4)167 (5)
O2W—H2WA⋯O1iii0.85 (2)2.09 (3)2.882 (4)155 (5)
O2W—H2WB⋯O3iv0.85 (2)1.96 (3)2.776 (4)161 (6)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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