| Literature DB >> 22259339 |
Shi-Yong Zhang1, Zhong-Gao Zhou, Ke-Jun Wang.
Abstract
In the title polymer, {[Cu(C(8)H(12)N(2)O(6)P(2))]·2H(2)O}(n), the geometry of the five-coordinate Cu(II) ion can best be described as slightly distorted square-pyramidal formed by one N and two O atoms of an N(CH(2)PO(3)H)(2) group and one N atom from a pyridine ring. The elongated apex of the pyramid is occupied by one O atom from a third diphospho-nate ligand. The inter-connection of Cu(2+) ions by the diphospho-nate ligands results in the formation of a double-chain array along the b axis, in which the two sub-chains are inter-locked by pairs of PO(3) groups. The outside of each sub-chain is decorated by other PO(3) groups. These double chains are further assembled into a three-dimensional supra-molecular architecture via a large number of O-H⋯O hydrogen bonds between the phospho-nate groups and lattice water mol-ecules.Entities:
Year: 2011 PMID: 22259339 PMCID: PMC3254309 DOI: 10.1107/S1600536811052512
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C8H12N2O6P2)]·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1430 reflections | |
| θ = 2.1–27.6° | |
| µ = 1.80 mm−1 | |
| α = 75.648 (2)° | |
| β = 67.124 (2)° | Needle, blue |
| γ = 67.126 (2)° | 0.40 × 0.03 × 0.02 mm |
| Bruker APEXII CCD diffractometer | 3267 independent reflections |
| Radiation source: fine-focus sealed tube | 2309 reflections with |
| graphite | |
| phi and ω scans | θmax = 27.6°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 7659 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3267 reflections | (Δ/σ)max < 0.001 |
| 202 parameters | Δρmax = 0.50 e Å−3 |
| 6 restraints | Δρmin = −0.60 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.47006 (6) | 0.60143 (5) | 0.25556 (5) | 0.02485 (17) | |
| P1 | 0.69833 (14) | 0.32696 (12) | 0.39341 (11) | 0.0237 (2) | |
| P2 | 0.17163 (14) | 0.57368 (13) | 0.21239 (12) | 0.0265 (3) | |
| N1 | 0.5076 (4) | −0.1825 (4) | 0.2025 (3) | 0.0240 (7) | |
| N2 | 0.4396 (4) | 0.3746 (4) | 0.2980 (3) | 0.0207 (7) | |
| C1 | 0.3823 (5) | −0.0485 (5) | 0.1777 (4) | 0.0282 (9) | |
| H1A | 0.2869 | −0.0590 | 0.1696 | 0.034* | |
| C2 | 0.3912 (5) | 0.1042 (5) | 0.1641 (4) | 0.0293 (10) | |
| H2A | 0.3025 | 0.1945 | 0.1457 | 0.035* | |
| C3 | 0.5301 (5) | 0.1261 (4) | 0.1773 (4) | 0.0233 (9) | |
| C4 | 0.6596 (6) | −0.0148 (5) | 0.1992 (4) | 0.0294 (9) | |
| H4A | 0.7570 | −0.0076 | 0.2065 | 0.035* | |
| C5 | 0.6465 (5) | −0.1652 (5) | 0.2102 (4) | 0.0273 (9) | |
| H5A | 0.7364 | −0.2575 | 0.2233 | 0.033* | |
| C6 | 0.5389 (5) | 0.2920 (4) | 0.1674 (4) | 0.0243 (9) | |
| H6A | 0.4964 | 0.3607 | 0.0933 | 0.029* | |
| H6B | 0.6587 | 0.2831 | 0.1412 | 0.029* | |
| C7 | 0.5053 (5) | 0.2840 (5) | 0.4152 (4) | 0.0235 (9) | |
| H7A | 0.5324 | 0.1684 | 0.4164 | 0.028* | |
| H7B | 0.4179 | 0.3168 | 0.5029 | 0.028* | |
| C8 | 0.2500 (5) | 0.4113 (5) | 0.3387 (4) | 0.0224 (8) | |
| H8A | 0.1931 | 0.4454 | 0.4312 | 0.027* | |
| H8B | 0.2255 | 0.3151 | 0.3391 | 0.027* | |
| O1 | 0.8567 (4) | 0.1971 (3) | 0.3047 (3) | 0.0309 (7) | |
| H1B | 0.9034 | 0.2423 | 0.2302 | 0.046* | |
| O2 | 0.6750 (3) | 0.4935 (3) | 0.3111 (3) | 0.0278 (6) | |
| O3 | 0.7175 (4) | 0.3101 (3) | 0.5319 (3) | 0.0307 (7) | |
| O4 | 0.2907 (3) | 0.6731 (3) | 0.1706 (3) | 0.0273 (6) | |
| O5 | 0.1664 (4) | 0.5097 (3) | 0.0961 (3) | 0.0356 (7) | |
| O6 | −0.0163 (4) | 0.6712 (4) | 0.2955 (3) | 0.0393 (8) | |
| H6C | −0.0137 | 0.7334 | 0.3394 | 0.059* | |
| O1W | 1.0256 (4) | 0.3000 (4) | 0.0716 (3) | 0.0381 (8) | |
| H1WA | 1.065 (6) | 0.366 (5) | 0.078 (5) | 0.057* | |
| H1WB | 0.964 (6) | 0.344 (5) | 0.021 (5) | 0.057* | |
| O2W | −0.0383 (5) | 0.8732 (4) | 0.4421 (4) | 0.0462 (9) | |
| H2WA | −0.037 (7) | 0.965 (4) | 0.397 (5) | 0.069* | |
| H2WB | 0.053 (5) | 0.832 (6) | 0.464 (6) | 0.069* |
| Cu1 | 0.0279 (3) | 0.0187 (3) | 0.0339 (3) | −0.0064 (2) | −0.0186 (2) | −0.0011 (2) |
| P1 | 0.0258 (6) | 0.0185 (5) | 0.0290 (6) | −0.0027 (4) | −0.0154 (5) | −0.0030 (4) |
| P2 | 0.0283 (6) | 0.0233 (5) | 0.0369 (6) | −0.0077 (5) | −0.0215 (5) | −0.0020 (5) |
| N1 | 0.0277 (18) | 0.0195 (17) | 0.0268 (19) | −0.0072 (14) | −0.0117 (15) | −0.0025 (14) |
| N2 | 0.0248 (17) | 0.0177 (16) | 0.0235 (17) | −0.0068 (14) | −0.0127 (15) | −0.0014 (13) |
| C1 | 0.026 (2) | 0.023 (2) | 0.042 (3) | −0.0039 (17) | −0.018 (2) | −0.0081 (19) |
| C2 | 0.030 (2) | 0.022 (2) | 0.040 (3) | −0.0025 (18) | −0.020 (2) | −0.0054 (18) |
| C3 | 0.028 (2) | 0.0192 (19) | 0.023 (2) | −0.0061 (17) | −0.0087 (18) | −0.0038 (16) |
| C4 | 0.031 (2) | 0.028 (2) | 0.034 (2) | −0.0097 (19) | −0.015 (2) | −0.0042 (19) |
| C5 | 0.028 (2) | 0.0169 (19) | 0.039 (3) | −0.0065 (17) | −0.017 (2) | −0.0003 (18) |
| C6 | 0.028 (2) | 0.022 (2) | 0.027 (2) | −0.0063 (17) | −0.0142 (18) | −0.0024 (17) |
| C7 | 0.031 (2) | 0.0188 (19) | 0.023 (2) | −0.0078 (17) | −0.0125 (18) | 0.0005 (16) |
| C8 | 0.023 (2) | 0.022 (2) | 0.026 (2) | −0.0100 (17) | −0.0100 (18) | −0.0025 (17) |
| O1 | 0.0302 (16) | 0.0228 (15) | 0.0335 (17) | −0.0006 (13) | −0.0123 (14) | −0.0028 (13) |
| O2 | 0.0279 (16) | 0.0194 (14) | 0.0395 (17) | −0.0054 (12) | −0.0194 (14) | 0.0008 (13) |
| O3 | 0.0312 (17) | 0.0335 (16) | 0.0321 (17) | −0.0054 (13) | −0.0200 (14) | −0.0043 (13) |
| O4 | 0.0315 (16) | 0.0234 (14) | 0.0367 (17) | −0.0100 (12) | −0.0243 (14) | 0.0038 (13) |
| O5 | 0.049 (2) | 0.0308 (16) | 0.0431 (19) | −0.0148 (15) | −0.0302 (16) | −0.0026 (14) |
| O6 | 0.0290 (17) | 0.0360 (18) | 0.061 (2) | −0.0048 (14) | −0.0248 (16) | −0.0111 (16) |
| O1W | 0.041 (2) | 0.0387 (19) | 0.042 (2) | −0.0163 (16) | −0.0204 (16) | 0.0014 (15) |
| O2W | 0.048 (2) | 0.0337 (19) | 0.061 (2) | −0.0053 (17) | −0.030 (2) | −0.0057 (17) |
| Cu1—O2 | 1.949 (3) | C2—C3 | 1.390 (5) |
| Cu1—O4 | 1.949 (2) | C2—H2A | 0.9300 |
| Cu1—N1i | 2.008 (3) | C3—C4 | 1.385 (5) |
| Cu1—N2 | 2.080 (3) | C3—C6 | 1.501 (5) |
| Cu1—O3ii | 2.315 (3) | C4—C5 | 1.376 (5) |
| P1—O3 | 1.495 (3) | C4—H4A | 0.9300 |
| P1—O2 | 1.514 (3) | C5—H5A | 0.9300 |
| P1—O1 | 1.570 (3) | C6—H6A | 0.9700 |
| P1—C7 | 1.827 (4) | C6—H6B | 0.9700 |
| P2—O5 | 1.497 (3) | C7—H7A | 0.9700 |
| P2—O4 | 1.518 (3) | C7—H7B | 0.9700 |
| P2—O6 | 1.563 (3) | C8—H8A | 0.9700 |
| P2—C8 | 1.831 (4) | C8—H8B | 0.9700 |
| N1—C1 | 1.340 (5) | O1—H1B | 0.8200 |
| N1—C5 | 1.341 (5) | O3—Cu1ii | 2.315 (3) |
| N1—Cu1iii | 2.008 (3) | O6—H6C | 0.8200 |
| N2—C7 | 1.489 (5) | O1W—H1WA | 0.832 (19) |
| N2—C8 | 1.492 (5) | O1W—H1WB | 0.836 (19) |
| N2—C6 | 1.507 (5) | O2W—H2WA | 0.846 (19) |
| C1—C2 | 1.376 (6) | O2W—H2WB | 0.848 (19) |
| C1—H1A | 0.9300 | ||
| O2—Cu1—O4 | 167.12 (11) | C3—C2—H2A | 119.4 |
| O2—Cu1—N1i | 93.65 (12) | C4—C3—C2 | 115.6 (3) |
| O4—Cu1—N1i | 92.92 (12) | C4—C3—C6 | 122.4 (4) |
| O2—Cu1—N2 | 86.48 (11) | C2—C3—C6 | 121.9 (3) |
| O4—Cu1—N2 | 86.29 (11) | C5—C4—C3 | 121.1 (4) |
| N1i—Cu1—N2 | 176.50 (13) | C5—C4—H4A | 119.4 |
| O2—Cu1—O3ii | 96.97 (11) | C3—C4—H4A | 119.4 |
| O4—Cu1—O3ii | 94.37 (11) | N1—C5—C4 | 121.9 (4) |
| N1i—Cu1—O3ii | 87.53 (12) | N1—C5—H5A | 119.0 |
| N2—Cu1—O3ii | 95.93 (11) | C4—C5—H5A | 119.0 |
| O3—P1—O2 | 116.53 (16) | C3—C6—N2 | 115.5 (3) |
| O3—P1—O1 | 108.57 (16) | C3—C6—H6A | 108.4 |
| O2—P1—O1 | 110.13 (17) | N2—C6—H6A | 108.4 |
| O3—P1—C7 | 110.01 (18) | C3—C6—H6B | 108.4 |
| O2—P1—C7 | 103.88 (16) | N2—C6—H6B | 108.4 |
| O1—P1—C7 | 107.31 (17) | H6A—C6—H6B | 107.5 |
| O5—P2—O4 | 115.75 (17) | N2—C7—P1 | 109.1 (3) |
| O5—P2—O6 | 108.56 (17) | N2—C7—H7A | 109.9 |
| O4—P2—O6 | 111.15 (16) | P1—C7—H7A | 109.9 |
| O5—P2—C8 | 112.42 (17) | N2—C7—H7B | 109.9 |
| O4—P2—C8 | 103.00 (16) | P1—C7—H7B | 109.9 |
| O6—P2—C8 | 105.44 (18) | H7A—C7—H7B | 108.3 |
| C1—N1—C5 | 118.3 (3) | N2—C8—P2 | 108.1 (3) |
| C1—N1—Cu1iii | 120.0 (3) | N2—C8—H8A | 110.1 |
| C5—N1—Cu1iii | 121.1 (3) | P2—C8—H8A | 110.1 |
| C7—N2—C8 | 111.7 (3) | N2—C8—H8B | 110.1 |
| C7—N2—C6 | 112.3 (3) | P2—C8—H8B | 110.1 |
| C8—N2—C6 | 112.8 (3) | H8A—C8—H8B | 108.4 |
| C7—N2—Cu1 | 107.6 (2) | P1—O1—H1B | 109.5 |
| C8—N2—Cu1 | 104.3 (2) | P1—O2—Cu1 | 119.08 (16) |
| C6—N2—Cu1 | 107.7 (2) | P1—O3—Cu1ii | 133.88 (16) |
| N1—C1—C2 | 121.7 (4) | P2—O4—Cu1 | 117.93 (16) |
| N1—C1—H1A | 119.1 | P2—O6—H6C | 109.5 |
| C2—C1—H1A | 119.1 | H1WA—O1W—H1WB | 109 (4) |
| C1—C2—C3 | 121.3 (4) | H2WA—O2W—H2WB | 107 (4) |
| C1—C2—H2A | 119.4 |
| H··· | ||||
| O1—H1B···O1W | 0.82 | 1.68 | 2.494 (4) | 169 |
| O6—H6C···O2W | 0.82 | 1.75 | 2.567 (5) | 172 |
| O1W—H1WA···O5iv | 0.83 (2) | 1.92 (2) | 2.746 (4) | 177 (5) |
| O1W—H1WB···O5v | 0.84 (2) | 1.93 (2) | 2.747 (4) | 167 (5) |
| O2W—H2WA···O1vi | 0.85 (2) | 2.09 (3) | 2.882 (4) | 155 (5) |
| O2W—H2WB···O3ii | 0.85 (2) | 1.96 (3) | 2.776 (4) | 161 (6) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.82 | 1.68 | 2.494 (4) | 169 |
| O6—H6 | 0.82 | 1.75 | 2.567 (5) | 172 |
| O1 | 0.83 (2) | 1.92 (2) | 2.746 (4) | 177 (5) |
| O1 | 0.84 (2) | 1.93 (2) | 2.747 (4) | 167 (5) |
| O2 | 0.85 (2) | 2.09 (3) | 2.882 (4) | 155 (5) |
| O2 | 0.85 (2) | 1.96 (3) | 2.776 (4) | 161 (6) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .