Literature DB >> 22257007

Genome and gene duplications and gene expression divergence: a view from plants.

Yupeng Wang1, Xiyin Wang, Andrew H Paterson.   

Abstract

With many plant genomes sequenced, it is now clear that one distinguishing feature of angiosperm (flowering plant) genomes is their high frequency of whole-genome duplication. Single-gene duplication is also widespread in angiosperm genomes. Following various mechanisms of gene duplication, genes are often retained or lost in a biased manner, which has suggested recent models for gene family evolution, such as functional buffering and the gene balance hypothesis in addition to now-classical models, including neofunctionalization and subfunctionalization. Evolutionary consequences of gene duplication, often studied through analyzing gene expression divergence, have enhanced understanding of the biological significance of different mechanisms of gene duplication.
© 2012 New York Academy of Sciences.

Mesh:

Year:  2012        PMID: 22257007     DOI: 10.1111/j.1749-6632.2011.06384.x

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  73 in total

1.  Functional evolution of phosphatidylethanolamine binding proteins in soybean and Arabidopsis.

Authors:  Zheng Wang; Zhengkui Zhou; Yunfeng Liu; Tengfei Liu; Qing Li; Yuanyuan Ji; Congcong Li; Chao Fang; Min Wang; Mian Wu; Yanting Shen; Tian Tang; Jianxin Ma; Zhixi Tian
Journal:  Plant Cell       Date:  2015-02-06       Impact factor: 11.277

2.  The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome.

Authors:  Cecilia Da Silva; Gianpiero Zamperin; Alberto Ferrarini; Andrea Minio; Alessandra Dal Molin; Luca Venturini; Genny Buson; Paola Tononi; Carla Avanzato; Elisa Zago; Eduardo Boido; Eduardo Dellacassa; Carina Gaggero; Mario Pezzotti; Francisco Carrau; Massimo Delledonne
Journal:  Plant Cell       Date:  2013-12-06       Impact factor: 11.277

3.  Differential gene expression and alternative splicing between diploid and tetraploid watermelon.

Authors:  Thangasamy Saminathan; Padma Nimmakayala; Sumanth Manohar; Sridhar Malkaram; Aldo Almeida; Robert Cantrell; Yan Tomason; Lavanya Abburi; Mohammad A Rahman; Venkata G Vajja; Amit Khachane; Brajendra Kumar; Harsha K Rajasimha; Amnon Levi; Todd Wehner; Umesh K Reddy
Journal:  J Exp Bot       Date:  2014-12-17       Impact factor: 6.992

4.  Genome-wide identification, expansion, and evolution analysis of homeobox genes and their expression profiles during root development in carrot.

Authors:  Feng Que; Guang-Long Wang; Tong Li; Ya-Hui Wang; Zhi-Sheng Xu; Ai-Sheng Xiong
Journal:  Funct Integr Genomics       Date:  2018-06-16       Impact factor: 3.410

5.  Different divergence events for three pairs of PEBPs in Gossypium as implied by evolutionary analysis.

Authors:  Youjun Lu; Wei Chen; Lanjie Zhao; Jinbo Yao; Yan Li; Weijun Yang; Ziyang Liu; Yongshan Zhang; Jie Sun
Journal:  Genes Genomics       Date:  2019-01-04       Impact factor: 1.839

6.  Genome-wide analysis of PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE (PDAT) genes in plants reveals the eudicot-wide PDAT gene expansion and altered selective pressures acting on the core eudicot PDAT paralogs.

Authors:  Xue Pan; Fred Y Peng; Randall J Weselake
Journal:  Plant Physiol       Date:  2015-01-13       Impact factor: 8.340

Review 7.  Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes.

Authors:  Nathan M Springer; Damon Lisch; Qing Li
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

8.  Spatial Divergence of PHR-PHT1 Modules Maintains Phosphorus Homeostasis in Soybean Nodules.

Authors:  Mingyang Lu; Zhiyuan Cheng; Xiao-Mei Zhang; Penghui Huang; Chengming Fan; Guolong Yu; Fulu Chen; Kun Xu; Qingshan Chen; Yuchen Miao; Yuzhen Han; Xianzhong Feng; Liangyu Liu; Yong-Fu Fu
Journal:  Plant Physiol       Date:  2020-07-17       Impact factor: 8.340

9.  Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum.

Authors:  Clícia Grativol; Michael Regulski; Marcelo Bertalan; W Richard McCombie; Felipe Rodrigues da Silva; Adhemar Zerlotini Neto; Renato Vicentini; Laurent Farinelli; Adriana Silva Hemerly; Robert A Martienssen; Paulo Cavalcanti Gomes Ferreira
Journal:  Plant J       Date:  2014-06-17       Impact factor: 6.417

10.  Genome-wide identification and comparative analysis of the cation proton antiporters family in pear and four other Rosaceae species.

Authors:  Hongsheng Zhou; Kaijie Qi; Xing Liu; Hao Yin; Peng Wang; Jianqing Chen; Juyou Wu; Shaoling Zhang
Journal:  Mol Genet Genomics       Date:  2016-05-19       Impact factor: 3.291

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