Literature DB >> 22254257

In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response.

Jun Kong1, Lee Cooper, Carlos Moreno, Fusheng Wang, Tahsin Kurc, Joel Saltz, Daniel Brat.   

Abstract

In this paper, we present a complete and novel workflow for quantitative nuclear feature analysis of glioblastoma using high-throughput whole-slide microscopy image processing as it relates to treatment response and patient survival. With a complete suite of computer algorithms, large numbers of micro-anatomical structures, in this case nuclei, are analyzed and represented efficiently from whole-slide digitized images with numerical features. With regard to endpoints of treatment response, the computerized analysis presents a better discrimination than traditional neuropathologic review. As a result, this analysis method shows potential to facilitate a better understanding of disease progression and patients' response to therapy for glioblastoma.

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Year:  2011        PMID: 22254257      PMCID: PMC3292262          DOI: 10.1109/IEMBS.2011.6089903

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  4 in total

1.  Neuroradiological assessment of newly diagnosed glioblastoma.

Authors:  Srini Mukundan; Chad Holder; Jeffrey J Olson
Journal:  J Neurooncol       Date:  2008-08-20       Impact factor: 4.130

2.  Diagnosis of malignant glioma: role of neuropathology.

Authors:  Daniel J Brat; Richard A Prayson; Timothy C Ryken; Jeffrey J Olson
Journal:  J Neurooncol       Date:  2008-08-20       Impact factor: 4.130

3.  Clarifying the diffuse gliomas: an update on the morphologic features and markers that discriminate oligodendroglioma from astrocytoma.

Authors:  Meenakshi Gupta; Azita Djalilvand; Daniel J Brat
Journal:  Am J Clin Pathol       Date:  2005-11       Impact factor: 2.493

4.  An integrative approach for in silico glioma research.

Authors:  Lee A D Cooper; Jun Kong; David A Gutman; Fusheng Wang; Sharath R Cholleti; Tony C Pan; Patrick M Widener; Ashish Sharma; Tom Mikkelsen; Adam E Flanders; Daniel L Rubin; Erwin G Van Meir; Tahsin M Kurc; Carlos S Moreno; Daniel J Brat; Joel H Saltz
Journal:  IEEE Trans Biomed Eng       Date:  2010-07-23       Impact factor: 4.538

  4 in total
  7 in total

1.  Nature versus nurture in glioblastoma: microenvironment and genetics can both drive mesenchymal transcriptional signature.

Authors:  Brent A Orr; Charles G Eberhart
Journal:  Am J Pathol       Date:  2012-03-23       Impact factor: 4.307

2.  MaReIA: A Cloud MapReduce Based High Performance Whole Slide Image Analysis Framework.

Authors:  Hoang Vo; Jun Kong; Dejun Teng; Yanhui Liang; Ablimit Aji; George Teodoro; Fusheng Wang
Journal:  Distrib Parallel Databases       Date:  2018-07-30       Impact factor: 1.500

3.  Automated Grading of Gliomas using Deep Learning in Digital Pathology Images: A modular approach with ensemble of convolutional neural networks.

Authors:  Mehmet Günhan Ertosun; Daniel L Rubin
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

4.  Managing and Querying Whole Slide Images.

Authors:  Fusheng Wang; Tae W Oh; Cristobal Vergara-Niedermayr; Tahsin Kurc; Joel Saltz
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2012-02-16

5.  High-Performance Computational Analysis of Glioblastoma Pathology Images with Database Support Identifies Molecular and Survival Correlates.

Authors:  Jun Kong; Fusheng Wang; George Teodoro; Lee Cooper; Carlos S Moreno; Tahsin Kurc; Tony Pan; Joel Saltz; Daniel Brat
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2013-12

6.  A high-performance spatial database based approach for pathology imaging algorithm evaluation.

Authors:  Fusheng Wang; Jun Kong; Jingjing Gao; Lee A D Cooper; Tahsin Kurc; Zhengwen Zhou; David Adler; Cristobal Vergara-Niedermayr; Bryan Katigbak; Daniel J Brat; Joel H Saltz
Journal:  J Pathol Inform       Date:  2013-03-14

7.  Machine-based morphologic analysis of glioblastoma using whole-slide pathology images uncovers clinically relevant molecular correlates.

Authors:  Jun Kong; Lee A D Cooper; Fusheng Wang; Jingjing Gao; George Teodoro; Lisa Scarpace; Tom Mikkelsen; Matthew J Schniederjan; Carlos S Moreno; Joel H Saltz; Daniel J Brat
Journal:  PLoS One       Date:  2013-11-13       Impact factor: 3.240

  7 in total

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