Literature DB >> 22247716

Dichlorido[2-(3,5-dimethyl-1H-pyrazol-1-yl-κN)ethanamine-κN]zinc(II).

Ilia A Guzei, Lara C Spencer, Tebogo V Segapelo, James Darkwa.   

Abstract

The amine title complex, [n class="Chemical">ZnCl(2)(C(7)H(13)N(3))], resulted from imine hydrolysis in a Schiff base compound. The Zn metal atom has a distorted tetra-hedral geometry with the most significant deviation identified in the magnitude of the N-Zn-N angle. This deviation stems from the participation of the Zn and N atoms in a six-membered metallocyclic ring. The latter is in an approximate screw-boat conformation. Two strong N-H⋯Cl hydrogen bonds link the mol-ecules into ribbons propagating along the b-axis direction. The ribbons contain two second-order hydrogen-bonded motifs: a chain and a ring. The chain described by the graph set notation C(2) (2)(6) is formed by one hydrogen bond going in the forward direction (donor to acceptor) and the other in the backward direction (acceptor to donor). In the ring motif R(2) (2)(8), both hydrogen bonds propagate in the forward direction.

Entities:  

Year:  2011        PMID: 22247716      PMCID: PMC3253618          DOI: 10.1107/S1600536811044217

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For imine hydrolysis in n class="Chemical">Schiff base compounds, see: Guzei et al. (2010 ▶); Czaun et al. (2010 ▶); Bu et al. (1997 ▶); Koner & Ray (2008 ▶); Sinha et al. (2003 ▶). For graph-set analysis, see: Bernstein et al. (1995 ▶). Related structures were found from the Cambridge Structural Database (Allen, 2002 ▶). Bond distances and angles were confirmed to be typical by a Mogul structural check (Bruno et al., 2002 ▶). For ring analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

[ZnCl2(C7H13N3)] M = 275.47 Monoclinic, a = 9.060 (3) Å b = 8.894 (2) Å c = 14.260 (4) Å β = 97.95 (3)° V = 1138.1 (6) Å3 Z = 4 Cu Kα radiation μ = 7.00 mm−1 T = 100 K 0.48 × 0.28 × 0.21 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.134, T max = 0.321 16711 measured reflections 2123 independent reflections 2053 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.020 wR(F 2) = 0.051 S = 1.03 2123 reflections 120 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL, FCF_filter (Guzei, 2007 ▶) and INSerter (Guzei, 2007 ▶); molecular graphics: SHELXTL and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL, publCIF (Westrip, 2010 ▶) and modiCIFer (Guzei, 2007 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044217/zq2129sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044217/zq2129Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnCl2(C7H13N3)]F(000) = 560
Mr = 275.47Dx = 1.608 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ynCell parameters from 9893 reflections
a = 9.060 (3) Åθ = 4.9–69.5°
b = 8.894 (2) ŵ = 7.00 mm1
c = 14.260 (4) ÅT = 100 K
β = 97.95 (3)°Block, colourless
V = 1138.1 (6) Å30.48 × 0.28 × 0.21 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer2123 independent reflections
Radiation source: fine-focus sealed tube2053 reflections with I > 2σ(I)
graphiteRint = 0.019
0.50° ω and 0.5 ° φ scansθmax = 70.0°, θmin = 5.5°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −10→10
Tmin = 0.134, Tmax = 0.321k = −10→10
16711 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.020Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.051H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.030P)2 + 0.6489P] where P = (Fo2 + 2Fc2)/3
2123 reflections(Δ/σ)max = 0.001
120 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.57494 (2)0.15806 (2)0.280022 (13)0.01647 (8)
Cl10.48746 (4)−0.06529 (4)0.22820 (3)0.02530 (10)
Cl20.53128 (4)0.33130 (4)0.16443 (3)0.02379 (10)
N10.50886 (14)0.22053 (14)0.40401 (8)0.0181 (3)
N20.60299 (14)0.29662 (15)0.47094 (9)0.0190 (3)
N30.79922 (14)0.16142 (14)0.32554 (9)0.0197 (3)
H3A0.83690.06700.31730.030*
H3B0.84330.22640.28760.030*
C10.25483 (18)0.1137 (2)0.38927 (12)0.0251 (3)
H1A0.20640.17910.33890.030*
H1C0.18350.08760.43240.030*
H1B0.28940.02170.36130.030*
C20.38499 (17)0.19396 (18)0.44299 (11)0.0198 (3)
C30.40007 (18)0.25371 (18)0.53388 (11)0.0226 (3)
H30.32820.25080.57650.027*
C40.54005 (18)0.31816 (18)0.55017 (11)0.0213 (3)
C50.61843 (19)0.3966 (2)0.63528 (11)0.0263 (3)
H5B0.54980.40940.68210.032*
H5A0.65270.49530.61680.032*
H5C0.70420.33640.66280.032*
C60.75227 (18)0.33978 (18)0.45274 (12)0.0229 (3)
H6B0.80570.38820.51010.027*
H6A0.74330.41450.40080.027*
C70.84300 (17)0.2068 (2)0.42600 (11)0.0233 (3)
H7B0.95010.23360.43600.028*
H7A0.82860.12070.46780.028*
U11U22U33U12U13U23
Zn10.01851 (12)0.01557 (12)0.01536 (12)0.00055 (7)0.00246 (8)−0.00065 (7)
Cl10.02428 (19)0.01691 (18)0.0344 (2)−0.00008 (14)0.00302 (15)−0.00614 (15)
Cl20.0279 (2)0.02177 (19)0.02037 (19)−0.00225 (14)−0.00132 (15)0.00530 (13)
N10.0190 (6)0.0199 (7)0.0151 (6)−0.0028 (5)0.0018 (5)−0.0018 (5)
N20.0185 (6)0.0220 (6)0.0164 (6)−0.0032 (5)0.0024 (5)−0.0029 (5)
N30.0200 (6)0.0183 (7)0.0213 (7)0.0008 (5)0.0043 (5)0.0008 (5)
C10.0209 (8)0.0301 (9)0.0247 (8)−0.0056 (7)0.0044 (6)−0.0018 (7)
C20.0202 (7)0.0201 (7)0.0190 (7)0.0001 (6)0.0030 (6)0.0031 (6)
C30.0240 (8)0.0268 (8)0.0181 (7)−0.0012 (6)0.0066 (6)0.0011 (6)
C40.0247 (8)0.0220 (7)0.0173 (7)0.0012 (6)0.0036 (6)0.0004 (6)
C50.0296 (8)0.0311 (9)0.0182 (7)−0.0024 (7)0.0036 (6)−0.0043 (7)
C60.0198 (8)0.0282 (9)0.0211 (8)−0.0062 (6)0.0041 (6)−0.0037 (6)
C70.0186 (7)0.0313 (9)0.0197 (7)0.0020 (6)0.0011 (6)0.0022 (7)
Zn1—N12.0214 (13)C1—H1B0.9800
Zn1—N32.0461 (14)C2—C31.390 (2)
Zn1—Cl12.2266 (6)C3—C41.382 (2)
Zn1—Cl22.2512 (6)C3—H30.9500
N1—C21.340 (2)C4—C51.492 (2)
N1—N21.3679 (18)C5—H5B0.9800
N2—C41.348 (2)C5—H5A0.9800
N2—C61.463 (2)C5—H5C0.9800
N3—C71.489 (2)C6—C71.519 (2)
N3—H3A0.9200C6—H6B0.9900
N3—H3B0.9200C6—H6A0.9900
C1—C21.496 (2)C7—H7B0.9900
C1—H1A0.9800C7—H7A0.9900
C1—H1C0.9800
N1—Zn1—N396.88 (6)C3—C2—C1128.97 (14)
N1—Zn1—Cl1113.62 (4)C4—C3—C2106.55 (14)
N3—Zn1—Cl1114.24 (4)C4—C3—H3126.7
N1—Zn1—Cl2114.15 (4)C2—C3—H3126.7
N3—Zn1—Cl2106.77 (4)N2—C4—C3106.56 (14)
Cl1—Zn1—Cl2110.44 (3)N2—C4—C5122.65 (14)
C2—N1—N2105.95 (12)C3—C4—C5130.79 (15)
C2—N1—Zn1132.88 (11)C4—C5—H5B109.5
N2—N1—Zn1120.99 (10)C4—C5—H5A109.5
C4—N2—N1111.10 (13)H5B—C5—H5A109.5
C4—N2—C6128.32 (13)C4—C5—H5C109.5
N1—N2—C6120.56 (12)H5B—C5—H5C109.5
C7—N3—Zn1115.47 (10)H5A—C5—H5C109.5
C7—N3—H3A108.4N2—C6—C7112.70 (13)
Zn1—N3—H3A108.4N2—C6—H6B109.1
C7—N3—H3B108.4C7—C6—H6B109.1
Zn1—N3—H3B108.4N2—C6—H6A109.1
H3A—N3—H3B107.5C7—C6—H6A109.1
C2—C1—H1A109.5H6B—C6—H6A107.8
C2—C1—H1C109.5N3—C7—C6111.80 (13)
H1A—C1—H1C109.5N3—C7—H7B109.3
C2—C1—H1B109.5C6—C7—H7B109.3
H1A—C1—H1B109.5N3—C7—H7A109.3
H1C—C1—H1B109.5C6—C7—H7A109.3
N1—C2—C3109.84 (14)H7B—C7—H7A107.9
N1—C2—C1121.18 (14)
N3—Zn1—N1—C2−151.81 (14)N2—N1—C2—C1179.17 (14)
Cl1—Zn1—N1—C2−31.54 (15)Zn1—N1—C2—C1−5.9 (2)
Cl2—Zn1—N1—C296.31 (14)N1—C2—C3—C4−0.41 (18)
N3—Zn1—N1—N222.52 (12)C1—C2—C3—C4−179.06 (16)
Cl1—Zn1—N1—N2142.79 (10)N1—N2—C4—C3−0.02 (18)
Cl2—Zn1—N1—N2−89.35 (11)C6—N2—C4—C3−178.15 (15)
C2—N1—N2—C4−0.23 (17)N1—N2—C4—C5179.25 (14)
Zn1—N1—N2—C4−175.91 (10)C6—N2—C4—C51.1 (3)
C2—N1—N2—C6178.07 (13)C2—C3—C4—N20.25 (18)
Zn1—N1—N2—C62.38 (18)C2—C3—C4—C5−178.94 (17)
N1—Zn1—N3—C7−0.89 (11)C4—N2—C6—C7122.45 (17)
Cl1—Zn1—N3—C7−120.69 (10)N1—N2—C6—C7−55.52 (19)
Cl2—Zn1—N3—C7116.93 (10)Zn1—N3—C7—C6−42.60 (16)
N2—N1—C2—C30.39 (17)N2—C6—C7—N378.30 (17)
Zn1—N1—C2—C3175.34 (11)
D—H···AD—HH···AD···AD—H···A
N3—H3A···Cl2i0.922.413.3073 (15)165.
N3—H3B···Cl1ii0.922.433.2620 (15)150.
Zn1—N12.0214 (13)
Zn1—N32.0461 (14)
Zn1—Cl12.2266 (6)
Zn1—Cl22.2512 (6)
N1—Zn1—N396.88 (6)
N1—Zn1—Cl1113.62 (4)
N3—Zn1—Cl1114.24 (4)
N1—Zn1—Cl2114.15 (4)
N3—Zn1—Cl2106.77 (4)
Cl1—Zn1—Cl2110.44 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯Cl2i0.922.413.3073 (15)165
N3—H3B⋯Cl1ii0.922.433.2620 (15)150

Symmetry codes: (i) ; (ii) .

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