Literature DB >> 22247541

Development of a novel method for analyzing collagen O-glycosylations by hydrazide chemistry.

Yuki Taga1, Masashi Kusubata, Kiyoko Ogawa-Goto, Shunji Hattori.   

Abstract

In recent years, glycopeptide purification by hydrazide chemistry has become popular in structural studies of glycoconjugates; however, applications of this method have been almost completely restricted to analysis of the N-glycoproteome. Here we report a novel method for analyzing O-glycosylations unique to collagen, which are attached to hydroxylysine and include galactosyl-hydroxylysine and glucosyl-galactosyl-hydroxylysine. We established a hydrazide chemistry-based glycopeptide purification method using (1) galactose oxidase to introduce an aldehyde into glycopeptides and (2) formic acid with heating to elute the bound glycopeptides by cleaving the hydrazone bond. This method allows not only identification of O-glycosylation sites in collagen but also concurrent discrimination of two types of carbohydrate substitutions. In bovine type I and type II collagens, galactosyl-hydroxylysine /glucosyl-galactosyl-hydroxylysine -containing peptides were specifically detected on subsequent comprehensive liquid chromatography (LC)/MS analysis, and many O-glycosylation sites, including unreported ones, were identified. The position of glycosylated hydroxylysine, which is determined by our unambiguous and simple method, could provide insight into the physiological role of the modifications.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22247541      PMCID: PMC3433922          DOI: 10.1074/mcp.M111.010397

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  36 in total

Review 1.  Identification of glycosylation sites in mucin peptides by edman degradation.

Authors:  N E Zachara; A A Gooley
Journal:  Methods Mol Biol       Date:  2000

2.  Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry.

Authors:  Hui Zhang; Xiao-Jun Li; Daniel B Martin; Ruedi Aebersold
Journal:  Nat Biotechnol       Date:  2003-05-18       Impact factor: 54.908

Review 3.  The primary structure of collagen.

Authors:  P P Fietzek; K Kühn
Journal:  Int Rev Connect Tissue Res       Date:  1976

4.  Structural studies on cartilage collagen employing limited cleavage and solubilization with pepsin.

Authors:  E J Miller
Journal:  Biochemistry       Date:  1972-12-19       Impact factor: 3.162

5.  A comparative study of glycopeptides derived from selected vertebrate collagens. A possible role of the carbohydrate in fibril formation.

Authors:  P H Morgan; H G Jacobs; J P Segrest; L W Cunningham
Journal:  J Biol Chem       Date:  1970-10-10       Impact factor: 5.157

6.  Anomalous cleavage of aspartyl-proline peptide bonds during amino acid sequence determinations.

Authors:  D Piszkiewicz; M Landon; E L Smith
Journal:  Biochem Biophys Res Commun       Date:  1970-09-10       Impact factor: 3.575

7.  Studies on the renal glomerular basement membrane. Nature of the carbohydrate units and their attachment to the peptide portion.

Authors:  R G Spiro
Journal:  J Biol Chem       Date:  1967-04-25       Impact factor: 5.157

8.  The covalent structure of cartilage collagen. Amino acid sequence of the NH2-terminal helical portion of the alpha 1 (II) chain.

Authors:  W T Butler; E J Miller; J E Finch
Journal:  Biochemistry       Date:  1976-07-13       Impact factor: 3.162

9.  The structure of the disaccharide unit of the renal glomerular basement membrane.

Authors:  R G Spiro
Journal:  J Biol Chem       Date:  1967-10-25       Impact factor: 5.157

10.  Lung cancer serum biomarker discovery using glycoprotein capture and liquid chromatography mass spectrometry.

Authors:  Xuemei Zeng; Brian L Hood; Mai Sun; Thomas P Conrads; Roger S Day; Joel L Weissfeld; Jill M Siegfried; William L Bigbee
Journal:  J Proteome Res       Date:  2010-10-28       Impact factor: 4.466

View more
  17 in total

1.  Developmental Stage-dependent Regulation of Prolyl 3-Hydroxylation in Tendon Type I Collagen.

Authors:  Yuki Taga; Masashi Kusubata; Kiyoko Ogawa-Goto; Shunji Hattori
Journal:  J Biol Chem       Date:  2015-11-13       Impact factor: 5.157

2.  Preserved Proteins from Extinct Bison latifrons Identified by Tandem Mass Spectrometry; Hydroxylysine Glycosides are a Common Feature of Ancient Collagen.

Authors:  Ryan C Hill; Matthew J Wither; Travis Nemkov; Alexander Barrett; Angelo D'Alessandro; Monika Dzieciatkowska; Kirk C Hansen
Journal:  Mol Cell Proteomics       Date:  2015-05-06       Impact factor: 5.911

3.  Component of splicing factor SF3b plays a key role in translational control of polyribosomes on the endoplasmic reticulum.

Authors:  Tomonori Ueno; Yuki Taga; Rei Yoshimoto; Akila Mayeda; Shunji Hattori; Kiyoko Ogawa-Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-19       Impact factor: 11.205

4.  Glycosylation modulates melanoma cell α2β1 and α3β1 integrin interactions with type IV collagen.

Authors:  Maciej J Stawikowski; Beatrix Aukszi; Roma Stawikowska; Mare Cudic; Gregg B Fields
Journal:  J Biol Chem       Date:  2014-06-23       Impact factor: 5.157

5.  Modulation of receptor binding to collagen by glycosylated 5-hydroxylysine: Chemical biology approaches made feasible by Carpino's Fmoc group.

Authors:  Maré Cudic; Gregg B Fields
Journal:  Pept Sci (Hoboken)       Date:  2020-03-19

Review 6.  Global and site-specific analysis of protein glycosylation in complex biological systems with Mass Spectrometry.

Authors:  Haopeng Xiao; Fangxu Sun; Suttipong Suttapitugsakul; Ronghu Wu
Journal:  Mass Spectrom Rev       Date:  2019-01-03       Impact factor: 10.946

7.  Comprehensive Characterization of Glycosylation and Hydroxylation of Basement Membrane Collagen IV by High-Resolution Mass Spectrometry.

Authors:  Trayambak Basak; Lorenzo Vega-Montoto; Lisa J Zimmerman; David L Tabb; Billy G Hudson; Roberto M Vanacore
Journal:  J Proteome Res       Date:  2015-12-09       Impact factor: 4.466

8.  Posttranslational modifications in type I collagen from different tissues extracted from wild type and prolyl 3-hydroxylase 1 null mice.

Authors:  Elena Pokidysheva; Keith D Zientek; Yoshihiro Ishikawa; Kazunori Mizuno; Janice A Vranka; Nathan T Montgomery; Douglas R Keene; Tatsuya Kawaguchi; Kenji Okuyama; Hans Peter Bächinger
Journal:  J Biol Chem       Date:  2013-07-16       Impact factor: 5.157

9.  LC-MS/MS identification of the O-glycosylation and hydroxylation of amino acid residues of collagen α-1 (II) chain from bovine cartilage.

Authors:  Ehwang Song; Yehia Mechref
Journal:  J Proteome Res       Date:  2013-07-23       Impact factor: 4.466

10.  Cyclophilin-B Modulates Collagen Cross-linking by Differentially Affecting Lysine Hydroxylation in the Helical and Telopeptidyl Domains of Tendon Type I Collagen.

Authors:  Masahiko Terajima; Yuki Taga; Yulong Chen; Wayne A Cabral; Guo Hou-Fu; Sirivimol Srisawasdi; Masako Nagasawa; Noriko Sumida; Shunji Hattori; Jonathan M Kurie; Joan C Marini; Mitsuo Yamauchi
Journal:  J Biol Chem       Date:  2016-03-02       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.