Literature DB >> 22247525

Draft genome sequence of the virulent strain 01-B526 of the fish pathogen Aeromonas salmonicida.

Steve J Charette1, Francis Brochu, Brian Boyle, Geneviève Filion, Katherine H Tanaka, Nicolas Derome.   

Abstract

Aeromonas salmonicida is an important fish pathogen, mainly of salmonids. This bacterium causes a disease named furunculosis, which is particularly detrimental for the aquaculture industry. Here, we present the draft genome sequence of A. salmonicida 01-B526, a strain isolated from a brook trout that is more virulent than A. salmonicida reference strain A449, for which a genome sequence is available.

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Year:  2012        PMID: 22247525      PMCID: PMC3264088          DOI: 10.1128/JB.06276-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  15 in total

1.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

2.  Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation.

Authors:  Samuel V Angiuoli; Aaron Gussman; William Klimke; Guy Cochrane; Dawn Field; George Garrity; Chinnappa D Kodira; Nikos Kyrpides; Ramana Madupu; Victor Markowitz; Tatiana Tatusova; Nick Thomson; Owen White
Journal:  OMICS       Date:  2008-06

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Modulation of juvenile brook trout (Salvelinus fontinalis) cellular immune system after Aeromonas salmonicida challenge.

Authors:  C Dautremepuits; M Fortier; S Croisetiere; P Belhumeur; M Fournier
Journal:  Vet Immunol Immunopathol       Date:  2005-11-02       Impact factor: 2.046

Review 5.  Occurrence and significance of atypical Aeromonas salmonicida in non-salmonid and salmonid fish species: a review.

Authors:  T Wiklund; I Dalsgaard
Journal:  Dis Aquat Organ       Date:  1998-02-26       Impact factor: 1.802

6.  Rfam: annotating non-coding RNAs in complete genomes.

Authors:  Sam Griffiths-Jones; Simon Moxon; Mhairi Marshall; Ajay Khanna; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

7.  The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen.

Authors:  Michael E Reith; Rama K Singh; Bruce Curtis; Jessica M Boyd; Anne Bouevitch; Jennifer Kimball; Janet Munholland; Colleen Murphy; Darren Sarty; Jason Williams; John He Nash; Stewart C Johnson; Laura L Brown
Journal:  BMC Genomics       Date:  2008-09-18       Impact factor: 3.969

8.  NCBI Reference Sequences: current status, policy and new initiatives.

Authors:  Kim D Pruitt; Tatiana Tatusova; William Klimke; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2008-10-16       Impact factor: 16.971

9.  The National Center for Biotechnology Information's Protein Clusters Database.

Authors:  William Klimke; Richa Agarwala; Azat Badretdin; Slava Chetvernin; Stacy Ciufo; Boris Fedorov; Boris Kiryutin; Kathleen O'Neill; Wolfgang Resch; Sergei Resenchuk; Susan Schafer; Igor Tolstoy; Tatiana Tatusova
Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971

10.  A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure.

Authors:  Sean R Eddy
Journal:  BMC Bioinformatics       Date:  2002-07-02       Impact factor: 3.169

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  19 in total

1.  Detection of variants of the pRAS3, pAB5S9, and pSN254 plasmids in Aeromonas salmonicida subsp. salmonicida: multidrug resistance, interspecies exchanges, and plasmid reshaping.

Authors:  Antony T Vincent; Mélanie V Trudel; Valérie E Paquet; Brian Boyle; Katherine H Tanaka; Stéphanie Dallaire-Dufresne; Rana K Daher; Michel Frenette; Nicolas Derome; Steve J Charette
Journal:  Antimicrob Agents Chemother       Date:  2014-09-29       Impact factor: 5.191

2.  Living in an Extremely Polluted Environment: Clues from the Genome of Melanin-Producing Aeromonas salmonicida subsp. pectinolytica 34melT.

Authors:  María Elisa Pavan; Esteban E Pavan; Nancy I López; Laura Levin; M Julia Pettinari
Journal:  Appl Environ Microbiol       Date:  2015-05-29       Impact factor: 4.792

3.  Characterization of bacteriophage T7-Ah reveals its lytic activity against a subset of both mesophilic and psychrophilic Aeromonas salmonicida strains.

Authors:  Gabrielle R Leduc; Valérie E Paquet; Antony T Vincent; Steve J Charette
Journal:  Arch Virol       Date:  2021-01-04       Impact factor: 2.574

4.  Draft Genome Sequence of the Aeromonas diversa Type Strain.

Authors:  Maribel Farfán; Nino Spataro; Ariadna Sanglas; Vicenta Albarral; J Gaspar Lorén; Elena Bosch; M Carmen Fusté
Journal:  Genome Announc       Date:  2013-06-27

5.  An insertion sequence-dependent plasmid rearrangement in Aeromonas salmonicida causes the loss of the type three secretion system.

Authors:  Katherine H Tanaka; Stéphanie Dallaire-Dufresne; Rana K Daher; Michel Frenette; Steve J Charette
Journal:  PLoS One       Date:  2012-03-14       Impact factor: 3.240

6.  Insertion sequence AS5 (IS AS5 ) is involved in the genomic plasticity of Aeromonas salmonicida.

Authors:  Mélanie V Trudel; Katherine H Tanaka; Geneviève Filion; Rana K Daher; Michel Frenette; Steve J Charette
Journal:  Mob Genet Elements       Date:  2013-07-08

7.  Bioinformatic genome comparisons for taxonomic and phylogenetic assignments using Aeromonas as a test case.

Authors:  Sophie M Colston; Matthew S Fullmer; Lidia Beka; Brigitte Lamy; J Peter Gogarten; Joerg Graf
Journal:  mBio       Date:  2014-11-18       Impact factor: 7.867

8.  IS-mediated loss of virulence by Aeromonas salmonicida: A tangible piece of an evolutionary puzzle.

Authors:  Katherine H Tanaka; Michel Frenette; Steve J Charette
Journal:  Mob Genet Elements       Date:  2013-01-01

9.  Draft Genome Sequence of Aeromonas molluscorum Strain 848TT, Isolated from Bivalve Molluscs.

Authors:  Nino Spataro; Maribel Farfán; Vicenta Albarral; Ariadna Sanglas; J Gaspar Lorén; M Carmen Fusté; Elena Bosch
Journal:  Genome Announc       Date:  2013-06-20

10.  Draft Genome Sequence of Aeromonas salmonicida subsp. achromogenes AS03, an Atypical Strain Isolated from Crucian Carp (Carassius carassius) in the Republic of Korea.

Authors:  Jee Eun Han; Ji Hyung Kim; Sang Phil Shin; Jin Woo Jun; Ji Young Chai; Se Chang Park
Journal:  Genome Announc       Date:  2013-10-03
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