Literature DB >> 22246508

Whole-genome sequence of Schistosoma haematobium.

Neil D Young1, Aaron R Jex, Bo Li, Shiping Liu, Linfeng Yang, Zijun Xiong, Yingrui Li, Cinzia Cantacessi, Ross S Hall, Xun Xu, Fangyuan Chen, Xuan Wu, Adhemar Zerlotini, Guilherme Oliveira, Andreas Hofmann, Guojie Zhang, Xiaodong Fang, Yi Kang, Bronwyn E Campbell, Alex Loukas, Shoba Ranganathan, David Rollinson, Gabriel Rinaldi, Paul J Brindley, Huanming Yang, Jun Wang, Jian Wang, Robin B Gasser.   

Abstract

Schistosomiasis is a neglected tropical disease caused by blood flukes (genus Schistosoma; schistosomes) and affecting 200 million people worldwide. No vaccines are available, and treatment relies on one drug, praziquantel. Schistosoma haematobium has come into the spotlight as a major cause of urogenital disease, as an agent linked to bladder cancer and as a predisposing factor for HIV/AIDS. The parasite is transmitted to humans from freshwater snails. Worms dwell in blood vessels and release eggs that become embedded in the bladder wall to elicit chronic immune-mediated disease and induce squamous cell carcinoma. Here we sequenced the 385-Mb genome of S. haematobium using Illumina-based technology at 74-fold coverage and compared it to sequences from related parasites. We included genome annotation based on function, gene ontology, networking and pathway mapping. This genome now provides an unprecedented resource for many fundamental research areas and shows great promise for the design of new disease interventions.

Entities:  

Mesh:

Year:  2012        PMID: 22246508     DOI: 10.1038/ng.1065

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  73 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  T-Coffee: A novel method for fast and accurate multiple sequence alignment.

Authors:  C Notredame; D G Higgins; J Heringa
Journal:  J Mol Biol       Date:  2000-09-08       Impact factor: 5.469

3.  A 'rule of three' for fragment-based lead discovery?

Authors:  Miles Congreve; Robin Carr; Chris Murray; Harren Jhoti
Journal:  Drug Discov Today       Date:  2003-10-01       Impact factor: 7.851

4.  Chromosomes of nine species of schistosomes.

Authors:  R B SHORT; M Y MENZEL
Journal:  J Parasitol       Date:  1960-06       Impact factor: 1.276

5.  pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination.

Authors:  Anna Lobley; Michael I Sadowski; David T Jones
Journal:  Bioinformatics       Date:  2009-05-07       Impact factor: 6.937

6.  SOAP2: an improved ultrafast tool for short read alignment.

Authors:  Ruiqiang Li; Chang Yu; Yingrui Li; Tak-Wah Lam; Siu-Ming Yiu; Karsten Kristiansen; Jun Wang
Journal:  Bioinformatics       Date:  2009-06-03       Impact factor: 6.937

7.  The sequence and de novo assembly of the giant panda genome.

Authors:  Ruiqiang Li; Wei Fan; Geng Tian; Hongmei Zhu; Lin He; Jing Cai; Quanfei Huang; Qingle Cai; Bo Li; Yinqi Bai; Zhihe Zhang; Yaping Zhang; Wen Wang; Jun Li; Fuwen Wei; Heng Li; Min Jian; Jianwen Li; Zhaolei Zhang; Rasmus Nielsen; Dawei Li; Wanjun Gu; Zhentao Yang; Zhaoling Xuan; Oliver A Ryder; Frederick Chi-Ching Leung; Yan Zhou; Jianjun Cao; Xiao Sun; Yonggui Fu; Xiaodong Fang; Xiaosen Guo; Bo Wang; Rong Hou; Fujun Shen; Bo Mu; Peixiang Ni; Runmao Lin; Wubin Qian; Guodong Wang; Chang Yu; Wenhui Nie; Jinhuan Wang; Zhigang Wu; Huiqing Liang; Jiumeng Min; Qi Wu; Shifeng Cheng; Jue Ruan; Mingwei Wang; Zhongbin Shi; Ming Wen; Binghang Liu; Xiaoli Ren; Huisong Zheng; Dong Dong; Kathleen Cook; Gao Shan; Hao Zhang; Carolin Kosiol; Xueying Xie; Zuhong Lu; Hancheng Zheng; Yingrui Li; Cynthia C Steiner; Tommy Tsan-Yuk Lam; Siyuan Lin; Qinghui Zhang; Guoqing Li; Jing Tian; Timing Gong; Hongde Liu; Dejin Zhang; Lin Fang; Chen Ye; Juanbin Zhang; Wenbo Hu; Anlong Xu; Yuanyuan Ren; Guojie Zhang; Michael W Bruford; Qibin Li; Lijia Ma; Yiran Guo; Na An; Yujie Hu; Yang Zheng; Yongyong Shi; Zhiqiang Li; Qing Liu; Yanling Chen; Jing Zhao; Ning Qu; Shancen Zhao; Feng Tian; Xiaoling Wang; Haiyin Wang; Lizhi Xu; Xiao Liu; Tomas Vinar; Yajun Wang; Tak-Wah Lam; Siu-Ming Yiu; Shiping Liu; Hemin Zhang; Desheng Li; Yan Huang; Xia Wang; Guohua Yang; Zhi Jiang; Junyi Wang; Nan Qin; Li Li; Jingxiang Li; Lars Bolund; Karsten Kristiansen; Gane Ka-Shu Wong; Maynard Olson; Xiuqing Zhang; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Nature       Date:  2009-12-13       Impact factor: 49.962

Review 8.  Culture for genetic manipulation of developmental stages of Schistosoma mansoni.

Authors:  Victoria H Mann; Maria E Morales; Gabriel Rinaldi; Paul J Brindley
Journal:  Parasitology       Date:  2009-09-21       Impact factor: 3.234

9.  A comparative proteomic study of the undeveloped and developed Schistosoma mansoni egg and its contents: the miracidium, hatch fluid and secretions.

Authors:  William Mathieson; R Alan Wilson
Journal:  Int J Parasitol       Date:  2009-11-14       Impact factor: 3.981

10.  SmedGD: the Schmidtea mediterranea genome database.

Authors:  Sofia M C Robb; Eric Ross; Alejandro Sánchez Alvarado
Journal:  Nucleic Acids Res       Date:  2007-09-18       Impact factor: 16.971

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  188 in total

1.  Genome-wide transcriptome analysis shows extensive alternative RNA splicing in the zoonotic parasite Schistosoma japonicum.

Authors:  Xianyu Piao; Nan Hou; Pengfei Cai; Shuai Liu; Chuang Wu; Qijun Chen
Journal:  BMC Genomics       Date:  2014-08-26       Impact factor: 3.969

2.  The genome of a blood fluke associated with human cancer.

Authors:  Makedonka Mitreva
Journal:  Nat Genet       Date:  2012-01-27       Impact factor: 38.330

3.  Still hope for schistosomiasis vaccine.

Authors:  Alessandra Ricciardi; Momar Ndao
Journal:  Hum Vaccin Immunother       Date:  2015       Impact factor: 3.452

4.  Template-dependent multiple displacement amplification for profiling human circulating RNA.

Authors:  Weihua Wang; Yi Ren; Yang Lu; Yuan Xu; Seth D Crosby; Adrian M Di Bisceglie; Xiaofeng Fan
Journal:  Biotechniques       Date:  2017-07-01       Impact factor: 1.993

5.  Characterization and expression analysis of Wnt5 in Schistosoma japonicum at different developmental stages.

Authors:  Na Ta; Xingang Feng; LingLing Deng; Zhiqiang Fu; Yang Hong; Jinming Liu; Hao Li; Ke Lu; Jiaojiao Lin; Chunxiu Yuan
Journal:  Parasitol Res       Date:  2015-06-17       Impact factor: 2.289

6.  The genomic proliferation of transposable elements in colonizing populations: Schistosoma mansoni in the new world.

Authors:  Bhagya K Wijayawardena; J Andrew DeWoody; Dennis J Minchella
Journal:  Genetica       Date:  2015-02-14       Impact factor: 1.082

7.  A Crystallin Fold in the Interleukin-4-inducing Principle of Schistosoma mansoni Eggs (IPSE/α-1) Mediates IgE Binding for Antigen-independent Basophil Activation.

Authors:  N Helge Meyer; Hubert Mayerhofer; Konstantinos Tripsianes; Silke Blindow; Daniela Barths; Astrid Mewes; Thomas Weimar; Thies Köhli; Steffen Bade; Tobias Madl; Andreas Frey; Helmut Haas; Jochen Mueller-Dieckmann; Michael Sattler; Gabriele Schramm
Journal:  J Biol Chem       Date:  2015-07-10       Impact factor: 5.157

Review 8.  Genome mining offers a new starting point for parasitology research.

Authors:  Zhiyue Lv; Zhongdao Wu; Limei Zhang; Pengyu Ji; Yifeng Cai; Shiqi Luo; Hongxi Wang; Hao Li
Journal:  Parasitol Res       Date:  2015-01-08       Impact factor: 2.289

Review 9.  Ca²⁺ channels and praziquantel: a view from the free world.

Authors:  John D Chan; Magdalena Zarowiecki; Jonathan S Marchant
Journal:  Parasitol Int       Date:  2012-12-16       Impact factor: 2.230

10.  Why does infection with some helminths cause cancer?

Authors:  Paul J Brindley; José M Correia da Costa; Banchob Sripa
Journal:  Trends Cancer       Date:  2015-11-01
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