Literature DB >> 22245581

Chromatin changes in the development and pathology of the Fragile X-associated disorders and Friedreich ataxia.

Daman Kumari1, Rachel Lokanga, Dmitry Yudkin, Xiao-Nan Zhao, Karen Usdin.   

Abstract

The Fragile X-associated disorders (FXDs) and Friedreich ataxia (FRDA) are genetic conditions resulting from expansion of a trinucleotide repeat in a region of the affected gene that is transcribed but not translated. In the case of the FXDs, pathology results from expansion of CGG•CCG-repeat tract in the 5' UTR of the FMR1 gene, while pathology in FRDA results from expansion of a GAA•TTC-repeat in intron 1 of the FXN gene. Expansion occurs during gametogenesis or early embryogenesis by a mechanism that is not well understood. Associated Expansion then produces disease pathology in various ways that are not completely understood either. In the case of the FXDs, alleles with 55-200 repeats express higher than normal levels of a transcript that is thought to be toxic, while alleles with >200 repeats are silenced. In addition, alleles with >200 repeats are associated with a cytogenetic abnormality known as a fragile site, which is apparent as a constriction or gap in the chromatin that is seen when cells are grown in presence of inhibitors of thymidylate synthase. FRDA alleles show a deficit of the FXN transcript. This review will address the role of repeat-mediated chromatin changes in these aspects of FXD and FRDA disease pathology. This article is part of a Special Issue entitled: Chromatin in time and space. Published by Elsevier B.V.

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Year:  2012        PMID: 22245581      PMCID: PMC3370136          DOI: 10.1016/j.bbagrm.2011.12.009

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  142 in total

1.  Dramatic, expansion-biased, age-dependent, tissue-specific somatic mosaicism in a transgenic mouse model of triplet repeat instability.

Authors:  M T Fortune; C Vassilopoulos; M I Coolbaugh; M J Siciliano; D G Monckton
Journal:  Hum Mol Genet       Date:  2000-02-12       Impact factor: 6.150

2.  Elevated levels of FMR1 mRNA in carrier males: a new mechanism of involvement in the fragile-X syndrome.

Authors:  F Tassone; R J Hagerman; A K Taylor; L W Gane; T E Godfrey; P J Hagerman
Journal:  Am J Hum Genet       Date:  2000-01       Impact factor: 11.025

3.  CTCF-binding sites flank CTG/CAG repeats and form a methylation-sensitive insulator at the DM1 locus.

Authors:  G N Filippova; C P Thienes; B H Penn; D H Cho; Y J Hu; J M Moore; T R Klesert; V V Lobanenkov; S J Tapscott
Journal:  Nat Genet       Date:  2001-08       Impact factor: 38.330

4.  The GAA*TTC triplet repeat expanded in Friedreich's ataxia impedes transcription elongation by T7 RNA polymerase in a length and supercoil dependent manner.

Authors:  E Grabczyk; K Usdin
Journal:  Nucleic Acids Res       Date:  2000-07-15       Impact factor: 16.971

5.  Demethylation, reactivation, and destabilization of human fragile X full-mutation alleles in mouse embryocarcinoma cells.

Authors:  D Wöhrle; U Salat; H Hameister; W Vogel; P Steinbach
Journal:  Am J Hum Genet       Date:  2001-07-13       Impact factor: 11.025

6.  Msh2 deficiency prevents in vivo somatic instability of the CAG repeat in Huntington disease transgenic mice.

Authors:  K Manley; T L Shirley; L Flaherty; A Messer
Journal:  Nat Genet       Date:  1999-12       Impact factor: 38.330

7.  Age-dependent and tissue-specific CAG repeat instability occurs in mouse knock-in for a mutant Huntington's disease gene.

Authors:  H Ishiguro; K Yamada; H Sawada; K Nishii; N Ichino; M Sawada; Y Kurosawa; N Matsushita; K Kobayashi; J Goto; H Hashida; N Masuda; I Kanazawa; T Nagatsu
Journal:  J Neurosci Res       Date:  2001-08-15       Impact factor: 4.164

8.  Alleviating transcript insufficiency caused by Friedreich's ataxia triplet repeats.

Authors:  E Grabczyk; K Usdin
Journal:  Nucleic Acids Res       Date:  2000-12-15       Impact factor: 16.971

9.  Sticky DNA, a self-associated complex formed at long GAA*TTC repeats in intron 1 of the frataxin gene, inhibits transcription.

Authors:  N Sakamoto; K Ohshima; L Montermini; M Pandolfo; R D Wells
Journal:  J Biol Chem       Date:  2001-05-04       Impact factor: 5.157

10.  Fragile X prenatal analyses show full mutation females at high risk for mosaic Turner syndrome: fragile X leads to chromosome loss.

Authors:  Carl Dobkin; Gabriel Radu; Xiao-Hua Ding; W Ted Brown; Sarah L Nolin
Journal:  Am J Med Genet A       Date:  2009-10       Impact factor: 2.802

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  9 in total

Review 1.  DNA triplet repeat expansion and mismatch repair.

Authors:  Ravi R Iyer; Anna Pluciennik; Marek Napierala; Robert D Wells
Journal:  Annu Rev Biochem       Date:  2015-01-02       Impact factor: 23.643

Review 2.  Precarious maintenance of simple DNA repeats in eukaryotes.

Authors:  Alexander J Neil; Jane C Kim; Sergei M Mirkin
Journal:  Bioessays       Date:  2017-07-13       Impact factor: 4.345

3.  The FMR1 promoter is selectively hydroxymethylated in primary neurons of fragile X syndrome patients.

Authors:  Rustam Esanov; Nadja S Andrade; Sarah Bennison; Claes Wahlestedt; Zane Zeier
Journal:  Hum Mol Genet       Date:  2016-11-15       Impact factor: 6.150

Review 4.  Disruption of RNA Metabolism in Neurological Diseases and Emerging Therapeutic Interventions.

Authors:  Julia K Nussbacher; Ricardos Tabet; Gene W Yeo; Clotilde Lagier-Tourenne
Journal:  Neuron       Date:  2019-04-17       Impact factor: 17.173

Review 5.  RNA-binding proteins in neurological development and disease.

Authors:  Shavanie Prashad; Pallavi P Gopal
Journal:  RNA Biol       Date:  2020-08-30       Impact factor: 4.652

Review 6.  Chromatin modifications and DNA repair: beyond double-strand breaks.

Authors:  Nealia C M House; Melissa R Koch; Catherine H Freudenreich
Journal:  Front Genet       Date:  2014-09-05       Impact factor: 4.599

7.  Effects on murine behavior and lifespan of selectively decreasing expression of mutant huntingtin allele by supt4h knockdown.

Authors:  Hui-Min Cheng; Yijuang Chern; I-Hui Chen; Chia-Rung Liu; Sih-Huei Li; Seung J Chun; Frank Rigo; C Frank Bennett; Ning Deng; Yanan Feng; Chyuan-Sheng Lin; Yu-Ting Yan; Stanley N Cohen; Tzu-Hao Cheng
Journal:  PLoS Genet       Date:  2015-03-11       Impact factor: 5.917

8.  Activating frataxin expression by repeat-targeted nucleic acids.

Authors:  Liande Li; Masayuki Matsui; David R Corey
Journal:  Nat Commun       Date:  2016-02-04       Impact factor: 14.919

Review 9.  Structures and stability of simple DNA repeats from bacteria.

Authors:  Vaclav Brazda; Miroslav Fojta; Richard P Bowater
Journal:  Biochem J       Date:  2020-01-31       Impact factor: 3.857

  9 in total

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