Literature DB >> 22242933

Development of surface-SFED models for polar solvents.

Sehan Lee1, Kwang-Hwi Cho, William E Acree, Kyoung Tai No.   

Abstract

We developed surface grid-based solvation free energy density (Surface-SFED) models for 36 commonly used polar solvents. The parametrization was performed with a large and diverse set of experimental solvation free energies mainly consisting of combinations of polar solvent and multipolar solute. Therefore, the contribution of hydrogen bonds was dominant in the model. In order to increase the accuracy of the model, an elaborate version of a previous hydrogen bond acidity and basicity prediction model was introduced. We present two parametrizations for use with experimentally determined (Surface-SFED/HB(exp)) and empirical (Surface-SFED/HB(cal)) hydrogen bond acidity and basicity values. Our computational results agreed well with experimental results, and inaccuracy of empirical hydrogen bond acidity and basicity values was the main source of error in Surface-SFED/HB(cal). The mean absolute errors of Surface-SFED/HB(exp) and Surface-SFED/HB(cal) were 0.49 and 0.54 kcal/mol, respectively.

Entities:  

Year:  2012        PMID: 22242933     DOI: 10.1021/ci2004913

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  2 in total

1.  A generalized G-SFED continuum solvation free energy calculation model.

Authors:  Sehan Lee; Kwang-Hwi Cho; Young-Mook Kang; Harold A Scheraga; Kyoung Tai No
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-01       Impact factor: 11.205

2.  Structural bases of norovirus RNA dependent RNA polymerase inhibition by novel suramin-related compounds.

Authors:  Romina Croci; Margherita Pezzullo; Delia Tarantino; Mario Milani; Shwu-Chen Tsay; Radhakrishnan Sureshbabu; Yi-Jin Tsai; Eloise Mastrangelo; Jacques Rohayem; Martino Bolognesi; Jih Ru Hwu
Journal:  PLoS One       Date:  2014-03-12       Impact factor: 3.240

  2 in total

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