Literature DB >> 22237541

First evidence for the existence of pennate diatom viruses.

Yuji Tomaru1, Kensuke Toyoda, Kei Kimura, Naotsugu Hata, Mikihide Yoshida, Keizo Nagasaki.   

Abstract

Diatoms are considered the most successful and widespread group of photosynthetic eukaryotes. Their contribution to primary production is remarkably significant to the earth's ecosystems. Diatoms are composed of two orders: Centrales and Pennales. Thus far, viruses infecting centric diatom species have been isolated and characterized; however, viruses infecting pennates have not been reported. Here, we describe the first isolations and preliminary characterizations of two distinct pennate diatom viruses, AglaRNAV (31 nm in diameter, accumulates in the host cytoplasm) and TnitDNAV (35 nm in diameter, accumulates in the host nuclei) infecting Asterionellopsis glacialis and Thalassionema nitzschioides, respectively. Their genomes contain a single-stranded RNA of approximately 9.5 kb, and a closed, circular single-stranded DNA of approximately 5.5 kb harboring a partially double-stranded region, respectively. Further analysis of these viruses may elucidate many aspects of diatom host-virus relationships.

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Year:  2012        PMID: 22237541      PMCID: PMC3379641          DOI: 10.1038/ismej.2011.207

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  9 in total

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Journal:  Science       Date:  2004-10-01       Impact factor: 47.728

Review 3.  Oceanographic and biogeochemical insights from diatom genomes.

Authors:  Chris Bowler; Assaf Vardi; Andrew E Allen
Journal:  Ann Rev Mar Sci       Date:  2010

Review 4.  Viruses in the sea.

Authors:  Curtis A Suttle
Journal:  Nature       Date:  2005-09-15       Impact factor: 49.962

5.  Isolation and characterization of a single-stranded DNA virus infecting Chaetoceros lorenzianus Grunow.

Authors:  Yuji Tomaru; Yoshitake Takao; Hidekazu Suzuki; Tamotsu Nagumo; Kanae Koike; Keizo Nagasaki
Journal:  Appl Environ Microbiol       Date:  2011-06-10       Impact factor: 4.792

6.  Isolation and characterization of a single-stranded RNA virus infecting the bloom-forming diatom Chaetoceros socialis.

Authors:  Yuji Tomaru; Yoshitake Takao; Hidekazu Suzuki; Tamotsu Nagumo; Keizo Nagasaki
Journal:  Appl Environ Microbiol       Date:  2009-02-20       Impact factor: 4.792

7.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes.

Authors:  Chris Bowler; Andrew E Allen; Jonathan H Badger; Jane Grimwood; Kamel Jabbari; Alan Kuo; Uma Maheswari; Cindy Martens; Florian Maumus; Robert P Otillar; Edda Rayko; Asaf Salamov; Klaas Vandepoele; Bank Beszteri; Ansgar Gruber; Marc Heijde; Michael Katinka; Thomas Mock; Klaus Valentin; Fréderic Verret; John A Berges; Colin Brownlee; Jean-Paul Cadoret; Anthony Chiovitti; Chang Jae Choi; Sacha Coesel; Alessandra De Martino; J Chris Detter; Colleen Durkin; Angela Falciatore; Jérome Fournet; Miyoshi Haruta; Marie J J Huysman; Bethany D Jenkins; Katerina Jiroutova; Richard E Jorgensen; Yolaine Joubert; Aaron Kaplan; Nils Kröger; Peter G Kroth; Julie La Roche; Erica Lindquist; Markus Lommer; Véronique Martin-Jézéquel; Pascal J Lopez; Susan Lucas; Manuela Mangogna; Karen McGinnis; Linda K Medlin; Anton Montsant; Marie-Pierre Oudot-Le Secq; Carolyn Napoli; Miroslav Obornik; Micaela Schnitzler Parker; Jean-Louis Petit; Betina M Porcel; Nicole Poulsen; Matthew Robison; Leszek Rychlewski; Tatiana A Rynearson; Jeremy Schmutz; Harris Shapiro; Magali Siaut; Michele Stanley; Michael R Sussman; Alison R Taylor; Assaf Vardi; Peter von Dassow; Wim Vyverman; Anusuya Willis; Lucjan S Wyrwicz; Daniel S Rokhsar; Jean Weissenbach; E Virginia Armbrust; Beverley R Green; Yves Van de Peer; Igor V Grigoriev
Journal:  Nature       Date:  2008-10-15       Impact factor: 49.962

8.  Isolation and characterization of a single-stranded RNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier.

Authors:  Yoko Shirai; Yuji Tomaru; Yoshitake Takao; Hidekazu Suzuki; Tamotsu Nagumo; Keizo Nagasaki
Journal:  Appl Environ Microbiol       Date:  2008-05-09       Impact factor: 4.792

9.  Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.

Authors:  Sotaro Chiba; Hideki Kondo; Akio Tani; Daisuke Saisho; Wataru Sakamoto; Satoko Kanematsu; Nobuhiro Suzuki
Journal:  PLoS Pathog       Date:  2011-07-14       Impact factor: 6.823

  9 in total
  16 in total

1.  Discovery of two novel viruses expands the diversity of single-stranded DNA and single-stranded RNA viruses infecting a cosmopolitan marine diatom.

Authors:  Kei Kimura; Yuji Tomaru
Journal:  Appl Environ Microbiol       Date:  2014-12-01       Impact factor: 4.792

2.  Isolation and characterization of a single-stranded DNA virus infecting the marine diatom Chaetoceros sp. strain SS628-11 isolated from western Japan.

Authors:  Kei Kimura; Yuji Tomaru
Journal:  PLoS One       Date:  2013-12-17       Impact factor: 3.240

3.  Characterization of marine diatom-infecting virus promoters in the model diatom Phaeodactylum tricornutum.

Authors:  Takashi Kadono; Arisa Miyagawa-Yamaguchi; Nozomu Kira; Yuji Tomaru; Takuma Okami; Takamichi Yoshimatsu; Liyuan Hou; Takeshi Ohama; Kazunari Fukunaga; Masanori Okauchi; Haruo Yamaguchi; Kohei Ohnishi; Angela Falciatore; Masao Adachi
Journal:  Sci Rep       Date:  2015-12-22       Impact factor: 4.379

4.  Towards quantitative viromics for both double-stranded and single-stranded DNA viruses.

Authors:  Simon Roux; Natalie E Solonenko; Vinh T Dang; Bonnie T Poulos; Sarah M Schwenck; Dawn B Goldsmith; Maureen L Coleman; Mya Breitbart; Matthew B Sullivan
Journal:  PeerJ       Date:  2016-12-08       Impact factor: 2.984

5.  Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions.

Authors:  Mariusz A Bromke; Jamal S Sabir; Fahad A Alfassi; Nahid H Hajarah; Saleh A Kabli; Abdulrahman L Al-Malki; Matt P Ashworth; Michaël Méret; Robert K Jansen; Lothar Willmitzer
Journal:  PLoS One       Date:  2015-10-06       Impact factor: 3.240

6.  Viral Impact on Prokaryotic and Microalgal Activities in the Microphytobenthic Biofilm of an Intertidal Mudflat (French Atlantic Coast).

Authors:  Hélène Montanié; Margot G De Crignis; Johann Lavaud
Journal:  Front Microbiol       Date:  2015-11-10       Impact factor: 5.640

7.  New single-stranded DNA virus with a unique genomic structure that infects marine diatom Chaetoceros setoensis.

Authors:  Yuji Tomaru; Kensuke Toyoda; Hidekazu Suzuki; Tamotsu Nagumo; Kei Kimura; Yoshitake Takao
Journal:  Sci Rep       Date:  2013-11-26       Impact factor: 4.379

8.  The characterization of RNA viruses in tropical seawater using targeted PCR and metagenomics.

Authors:  Alexander I Culley; Jaclyn A Mueller; Madhi Belcaid; Elisha M Wood-Charlson; Guylaine Poisson; Grieg F Steward
Journal:  MBio       Date:  2014-06-17       Impact factor: 7.867

9.  Establishment of a bacterial expression system and immunoassay platform for the major capsid protein of HcRNAV, a dinoflagellate-infecting RNA virus.

Authors:  Kei Wada; Kei Kimura; Akifumi Hasegawa; Keiichi Fukuyama; Keizo Nagasaki
Journal:  Microbes Environ       Date:  2012-10-05       Impact factor: 2.912

10.  Expanding our Understanding of the Seaweed Holobiont: RNA Viruses of the Red Alga Delisea pulchra.

Authors:  Tim Lachnit; Torsten Thomas; Peter Steinberg
Journal:  Front Microbiol       Date:  2016-01-08       Impact factor: 5.640

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