Literature DB >> 22235937

Defying stereotypes: the elusive search for a universal model of LysR-type regulation.

Cory Momany1, Ellen L Neidle.   

Abstract

LysR-type transcriptional regulators (LTTRs) compose the largest family of homologous regulators in bacteria. Considering their prevalence, it is not surprising that LTTRs control diverse metabolic functions. Arguably, the most unexpected aspect of LTTRs is the paucity of available structural information. Solubility issues are notoriously problematic, and structural studies have only recently begun to flourish. In this issue of Molecular Microbiology, Taylor et al. (2012) present the structure of AphB, a LysR-type regulator of virulence in Vibrio cholerae. This contribution adds significantly to the group of known full-length atomic LTTR structures, which remains small. Importantly, this report also describes an active-form variant. Small conformational changes in the effector-binding domain translate to global reorganization of the DNA-binding domain. Emerging from these results is a model of theme-and-variation among LTTRs rather than a unified regulatory scheme. Despite common structural folds, LTTRs exhibit differences in oligomerization, promoter recognition and communication with RNA polymerase. Such variation mirrors the diversity in sequence and function associated with members of this very large family.
© 2012 Blackwell Publishing Ltd.

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Year:  2012        PMID: 22235937     DOI: 10.1111/j.1365-2958.2011.07960.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  14 in total

1.  Regulation of the carbon-concentrating mechanism in the cyanobacterium Synechocystis sp. PCC6803 in response to changing light intensity and inorganic carbon availability.

Authors:  Robert L Burnap; Rehka Nambudiri; Steven Holland
Journal:  Photosynth Res       Date:  2013-08-29       Impact factor: 3.573

2.  Molecular determinants of Burkholderia pseudomallei BpeEF-OprC efflux pump expression.

Authors:  Katherine A Rhodes; Nawarat Somprasong; Nicole L Podnecky; Takehiko Mima; Sunisa Chirakul; Herbert P Schweizer
Journal:  Microbiology       Date:  2018-07-19       Impact factor: 2.777

3.  Malonate degradation in Acinetobacter baylyi ADP1: operon organization and regulation by MdcR.

Authors:  Julie L Stoudenmire; Alicia L Schmidt; Melissa P Tumen-Velasquez; Kathryn T Elliott; Nicole S Laniohan; S Walker Whitley; Nickolaus R Galloway; Melesse Nune; Michael West; Cory Momany; Ellen L Neidle; Anna C Karls
Journal:  Microbiology       Date:  2017-05       Impact factor: 2.777

4.  The β-lactamase gene regulator AmpR is a tetramer that recognizes and binds the D-Ala-D-Ala motif of its repressor UDP-N-acetylmuramic acid (MurNAc)-pentapeptide.

Authors:  Grishma Vadlamani; Misty D Thomas; Trushar R Patel; Lynda J Donald; Thomas M Reeve; Jörg Stetefeld; Kenneth G Standing; David J Vocadlo; Brian L Mark
Journal:  J Biol Chem       Date:  2014-12-05       Impact factor: 5.157

5.  Transcriptional cross-regulation between Gram-negative and gram-positive bacteria, demonstrated using ArgP-argO of Escherichia coli and LysG-lysE of Corynebacterium glutamicum.

Authors:  Carmelita N Marbaniang; J Gowrishankar
Journal:  J Bacteriol       Date:  2012-08-17       Impact factor: 3.490

6.  Crystal structure of the ligand-binding domain of a LysR-type transcriptional regulator: transcriptional activation via a rotary switch.

Authors:  Youngchang Kim; Gekleng Chhor; Ching-Sung Tsai; James B Winans; Robert Jedrzejczak; Andrzej Joachimiak; Stephen C Winans
Journal:  Mol Microbiol       Date:  2018-11       Impact factor: 3.501

7.  DbdR, a New Member of the LysR Family of Transcriptional Regulators, Coordinately Controls Four Promoters in the Thauera aromatica AR-1 3,5-Dihydroxybenzoate Anaerobic Degradation Pathway.

Authors:  Daniel Pacheco-Sánchez; Águeda Molina-Fuentes; Patricia Marín; Alberto Díaz-Romero; Silvia Marqués
Journal:  Appl Environ Microbiol       Date:  2019-01-09       Impact factor: 4.792

Review 8.  Regulation of CO2 Concentrating Mechanism in Cyanobacteria.

Authors:  Robert L Burnap; Martin Hagemann; Aaron Kaplan
Journal:  Life (Basel)       Date:  2015-01-28

9.  Novel cyclic di-GMP effectors of the YajQ protein family control bacterial virulence.

Authors:  Shi-qi An; Delphine L Caly; Yvonne McCarthy; Sarah L Murdoch; Joseph Ward; Melanie Febrer; J Maxwell Dow; Robert P Ryan
Journal:  PLoS Pathog       Date:  2014-10-16       Impact factor: 6.823

10.  Regulation of the cyanobacterial CO2-concentrating mechanism involves internal sensing of NADP+ and α-ketogutarate levels by transcription factor CcmR.

Authors:  Shawn M E Daley; Anthony D Kappell; Marla J Carrick; Robert L Burnap
Journal:  PLoS One       Date:  2012-07-20       Impact factor: 3.240

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