Literature DB >> 22232175

Crystallization and preliminary X-ray analysis of pyridoxine 4-oxidase, the first enzyme in pyridoxine degradation pathway I.

Andrew Njagi Mugo1, Jun Kobayashi, Bunzo Mikami, Kouhei Ohnishi, Toshiharu Yagi.   

Abstract

Vitamin B(6)-degradation pathway I has recently been identified in Mesorhizobium loti MAFF303099. Pyridoxine 4-oxidase, an FAD-dependent enzyme, is the first enzyme in this pathway and catalyzes the irreversible oxidation of pyridoxine to pyridoxal. The enzyme was overexpressed in Escherichia coli with a His(6) tag and purified. The recombinant enzyme was crystallized at 277 K by the sitting-drop vapour-diffusion method using PEG 4000 as the precipitant. The crystal, which belonged to space group P2(1)2(1)2(1) with unit-cell parameters a = 62.38, b = 79.44, c = 136.43 Å, diffracted to 2.2 Å resolution. The calculated V(M) value (3.19 Å(3) Da(-1)) suggested that the asymmetric unit contained one molecule.
© 2012 International Union of Crystallography. All rights reserved.

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Year:  2011        PMID: 22232175      PMCID: PMC3253838          DOI: 10.1107/S1744309111048688

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  13 in total

1.  Effects of the chaperonin GroE on the refolding of tryptophanase from Escherichia coli. Refolding is enhanced in the presence of ADP.

Authors:  T Mizobata; Y Akiyama; K Ito; N Yumoto; Y Kawata
Journal:  J Biol Chem       Date:  1992-09-05       Impact factor: 5.157

2.  GMC oxidoreductases. A newly defined family of homologous proteins with diverse catalytic activities.

Authors:  D R Cavener
Journal:  J Mol Biol       Date:  1992-02-05       Impact factor: 5.469

3.  A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.

Authors:  M M Bradford
Journal:  Anal Biochem       Date:  1976-05-07       Impact factor: 3.365

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  1.8 and 1.9 A resolution structures of the Penicillium amagasakiense and Aspergillus niger glucose oxidases as a basis for modelling substrate complexes.

Authors:  G Wohlfahrt; S Witt; J Hendle; D Schomburg; H M Kalisz; H J Hecht
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-05

Review 6.  Sequence-structure analysis of FAD-containing proteins.

Authors:  O Dym; D Eisenberg
Journal:  Protein Sci       Date:  2001-09       Impact factor: 6.725

7.  The nitrogen-fixing symbiotic bacterium Mesorhizobium loti has and expresses the gene encoding pyridoxine 4-oxidase involved in the degradation of vitamin B6.

Authors:  Baiqiang Yuan; Yu Yoshikane; Nana Yokochi; Kouhei Ohnishi; Toshiharu Yagi
Journal:  FEMS Microbiol Lett       Date:  2004-05-15       Impact factor: 2.742

8.  Purification, molecular cloning, and characterization of pyridoxine 4-oxidase from Microbacterium luteolum.

Authors:  Yasuo Kaneda; Kouhei Ohnishi; Toshiharu Yagi
Journal:  Biosci Biotechnol Biochem       Date:  2002-05       Impact factor: 2.043

9.  The bacterial oxidation of vitamin B6. V. The enzymatic formation of pyridoxal and isopyridoxal from pyridoxine.

Authors:  T K Sundaram; E E Snell
Journal:  J Biol Chem       Date:  1969-05-25       Impact factor: 5.157

10.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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