Literature DB >> 22228914

FeP(Im)-AB Bonding Energies Evaluated with A Large Number of Density Functionals (P = porphine, Im = imidazole, AB = CO, NO, and O(2)).

Meng-Sheng Liao1, Ming-Ju Huang, John D Watts.   

Abstract

Sixty-four (64) density functionals, ranging from GGA, meta-GGA, hybrid GGA to hybrid meta-GGA, were tested to evaluate the FeP(Im)-AB bonding energies (E(bond)) in the heme model complexes FeP(Im)(AB) (P = porphine, Im = imidazole, AB = CO, NO, and O(2)). The results indicate that an accurate prediction of E(bond) for the various ligands to heme is difficult with the DFT methods; usually a functional successful for one system does not perform equally well for the other system(s). Relatively satisfactory results for the various FeP(Im)-AB bonding energies are obtained with the meta-GGA funtionals BLAP3 and Bmτ1; they yield E(bond) values of ca.1.1, 1.2, and 0.4 eV for AB = CO, NO, and O(2), respectively, which are in reasonable agreement with experimental data (0.78 - 0.85 eV for CO, 0.99 eV for NO, and 0.44 - 0.53 eV for O(2)). The other functionals show more or less deficiency for one or two of the systems. The performances of the various functionals in describing the spin-state energetics of the five-coordinate FeP(Im) complex were also examined.

Entities:  

Year:  2011        PMID: 22228914      PMCID: PMC3251830          DOI: 10.1080/00268976.2011.609141

Source DB:  PubMed          Journal:  Mol Phys        ISSN: 0026-8976            Impact factor:   1.962


  32 in total

1.  A steric mechanism for inhibition of CO binding to heme proteins.

Authors:  G S Kachalova; A N Popov; H D Bartunik
Journal:  Science       Date:  1999-04-16       Impact factor: 47.728

2.  Generalized Gradient Approximation Made Simple.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

3.  Atoms, molecules, solids, and surfaces: Applications of the generalized gradient approximation for exchange and correlation.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1992-09-15

4.  Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions.

Authors:  Yan Zhao; Nathan E Schultz; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2006-03       Impact factor: 6.006

5.  Workhorse semilocal density functional for condensed matter physics and quantum chemistry.

Authors:  John P Perdew; Adrienn Ruzsinszky; Gábor I Csonka; Lucian A Constantin; Jianwei Sun
Journal:  Phys Rev Lett       Date:  2009-07-10       Impact factor: 9.161

6.  A thorough benchmark of density functional methods for general main group thermochemistry, kinetics, and noncovalent interactions.

Authors:  Lars Goerigk; Stefan Grimme
Journal:  Phys Chem Chem Phys       Date:  2011-03-07       Impact factor: 3.676

7.  Nitrosylmetalloporphyrins. III. Synthesis and molecular stereochemistry of nitrosyl-alpha, beta, gamma, delta-tetraphenylporphinato(1-methylimidazole)iron(II).

Authors:  W R Scheidt; P L Piciulo
Journal:  J Am Chem Soc       Date:  1976-03-31       Impact factor: 15.419

8.  Nitric oxide myoglobin: crystal structure and analysis of ligand geometry.

Authors:  E A Brucker; J S Olson; M Ikeda-Saito; G N Phillips
Journal:  Proteins       Date:  1998-03-01

9.  Iron porphyrins with different imidazole ligands. A theoretical comparative study.

Authors:  Meng-Sheng Liao; Ming-Ju Huang; John D Watts
Journal:  J Phys Chem A       Date:  2010-09-09       Impact factor: 2.781

10.  Stereochemistry of carbonylmetalloporphyrins. The structure of (pyridine)(carbonyl)(5, 10, 15, 20-tetraphenylprophinato)iron(II).

Authors:  S M Peng; J A Ibers
Journal:  J Am Chem Soc       Date:  1976-12-08       Impact factor: 15.419

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  3 in total

1.  Binding of O2 and NO to heme in heme-nitric oxide/oxygen-binding (H-NOX) proteins. A theoretical study.

Authors:  Meng-Sheng Liao; Ming-Ju Huang; John D Watts
Journal:  J Phys Chem B       Date:  2013-08-22       Impact factor: 2.991

2.  Effects of local protein environment on the binding of diatomic molecules to heme in myoglobins. DFT and dispersion-corrected DFT studies.

Authors:  Meng-Sheng Liao; Ming-Ju Huang; John D Watts
Journal:  J Mol Model       Date:  2013-05-10       Impact factor: 1.810

3.  Insights into the effect of distal histidine and water hydrogen bonding on NO ligation to ferrous and ferric heme: a DFT study.

Authors:  Fatemeh Fateminasab; Aurelien de la Lande; Reza Omidyan
Journal:  RSC Adv       Date:  2022-02-08       Impact factor: 3.361

  3 in total

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