Literature DB >> 22226958

Molecular motors for DNA translocation in prokaryotes.

Jean-François Allemand1, Berenike Maier, Douglas E Smith.   

Abstract

DNA transport is an essential life process. From chromosome separation during cell division or sporulation, to DNA virus ejection or encapsidation, to horizontal gene transfer, it is ubiquitous in all living organisms. Directed DNA translocation is often energetically unfavorable and requires an active process that uses energy, namely the action of molecular motors. In this review we present recent advances in the understanding of three molecular motors involved in DNA transport in prokaryotes, paying special attention to recent studies using single-molecule techniques. We first discuss DNA transport during cell division, then packaging of DNA in phage capsids, and then DNA import during bacterial transformation.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22226958      PMCID: PMC3381886          DOI: 10.1016/j.copbio.2011.12.023

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  56 in total

1.  The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase.

Authors:  F X Gomis-Rüth; G Moncalián; R Pérez-Luque; A González; E Cabezón; F de la Cruz; M Coll
Journal:  Nature       Date:  2001-02-01       Impact factor: 49.962

Review 2.  Bacterial translocation motors investigated by single molecule techniques.

Authors:  Jean-Francois Allemand; Berenike Maier
Journal:  FEMS Microbiol Rev       Date:  2009-02-24       Impact factor: 16.408

3.  Fully efficient chromosome dimer resolution in Escherichia coli cells lacking the integral membrane domain of FtsK.

Authors:  Nelly Dubarry; François-Xavier Barre
Journal:  EMBO J       Date:  2009-12-24       Impact factor: 11.598

4.  The Q motif of a viral packaging motor governs its force generation and communicates ATP recognition to DNA interaction.

Authors:  James M Tsay; Jean Sippy; Michael Feiss; Douglas E Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-17       Impact factor: 11.205

5.  Natural transformation competence in Helicobacter pylori is mediated by the basic components of a type IV secretion system.

Authors:  D Hofreuter; S Odenbreit; R Haas
Journal:  Mol Microbiol       Date:  2001-07       Impact factor: 3.501

6.  Composite system mediates two-step DNA uptake into Helicobacter pylori.

Authors:  Kerstin Stingl; Stephanie Müller; Gerda Scheidgen-Kleyboldt; Martin Clausen; Berenike Maier
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-28       Impact factor: 11.205

7.  Separating speed and ability to displace roadblocks during DNA translocation by FtsK.

Authors:  Estelle Crozat; Adrien Meglio; Jean-François Allemand; Claire E Chivers; Mark Howarth; Catherine Vénien-Bryan; Ian Grainge; David J Sherratt
Journal:  EMBO J       Date:  2010-04-08       Impact factor: 11.598

8.  Intersubunit coordination in a homomeric ring ATPase.

Authors:  Jeffrey R Moffitt; Yann R Chemla; K Aathavan; Shelley Grimes; Paul J Jardine; Dwight L Anderson; Carlos Bustamante
Journal:  Nature       Date:  2009-01-07       Impact factor: 49.962

9.  FtsK translocation on DNA stops at XerCD-dif.

Authors:  James E Graham; Viknesh Sivanathan; David J Sherratt; Lidia K Arciszewska
Journal:  Nucleic Acids Res       Date:  2009-10-23       Impact factor: 16.971

10.  Substrate interactions and promiscuity in a viral DNA packaging motor.

Authors:  K Aathavan; Adam T Politzer; Ariel Kaplan; Jeffrey R Moffitt; Yann R Chemla; Shelley Grimes; Paul J Jardine; Dwight L Anderson; Carlos Bustamante
Journal:  Nature       Date:  2009-10-01       Impact factor: 49.962

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  12 in total

Review 1.  Bacterial transformation: distribution, shared mechanisms and divergent control.

Authors:  Calum Johnston; Bernard Martin; Gwennaele Fichant; Patrice Polard; Jean-Pierre Claverys
Journal:  Nat Rev Microbiol       Date:  2014-02-10       Impact factor: 60.633

2.  Single-Stranded DNA Uptake during Gonococcal Transformation.

Authors:  Christof Hepp; Heike Gangel; Katja Henseler; Niklas Günther; Berenike Maier
Journal:  J Bacteriol       Date:  2016-08-25       Impact factor: 3.490

3.  Walker-A Motif Acts to Coordinate ATP Hydrolysis with Motor Output in Viral DNA Packaging.

Authors:  Damian delToro; David Ortiz; Mariam Ordyan; Jean Sippy; Choon-Seok Oh; Nicholas Keller; Michael Feiss; Carlos E Catalano; Douglas E Smith
Journal:  J Mol Biol       Date:  2016-04-30       Impact factor: 5.469

4.  Functional Dissection of a Viral DNA Packaging Machine's Walker B Motif.

Authors:  Damian delToro; David Ortiz; Mariam Ordyan; Joshua Pajak; Jean Sippy; Alexis Catala; Choon-Seok Oh; Amber Vu; Gaurav Arya; Douglas E Smith; Carlos E Catalano; Michael Feiss
Journal:  J Mol Biol       Date:  2019-08-30       Impact factor: 5.469

5.  Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution.

Authors:  Lei Sun; Xinzheng Zhang; Song Gao; Prashant A Rao; Victor Padilla-Sanchez; Zhenguo Chen; Siyang Sun; Ye Xiang; Sriram Subramaniam; Venigalla B Rao; Michael G Rossmann
Journal:  Nat Commun       Date:  2015-07-06       Impact factor: 14.919

6.  Concerted spatio-temporal dynamics of imported DNA and ComE DNA uptake protein during gonococcal transformation.

Authors:  Heike Gangel; Christof Hepp; Stephanie Müller; Enno R Oldewurtel; Finn Erik Aas; Michael Koomey; Berenike Maier
Journal:  PLoS Pathog       Date:  2014-04-24       Impact factor: 6.823

7.  Nucleotide-dependent DNA gripping and an end-clamp mechanism regulate the bacteriophage T4 viral packaging motor.

Authors:  Mariam Ordyan; Istiaq Alam; Marthandan Mahalingam; Venigalla B Rao; Douglas E Smith
Journal:  Nat Commun       Date:  2018-12-21       Impact factor: 14.919

8.  Evidence that a catalytic glutamate and an 'Arginine Toggle' act in concert to mediate ATP hydrolysis and mechanochemical coupling in a viral DNA packaging motor.

Authors:  David Ortiz; Damian delToro; Mariam Ordyan; Joshua Pajak; Jean Sippy; Alexis Catala; Choon-Seok Oh; Amber Vu; Gaurav Arya; Michael Feiss; Douglas E Smith; Carlos E Catalano
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

9.  Evidence for an electrostatic mechanism of force generation by the bacteriophage T4 DNA packaging motor.

Authors:  Amy D Migliori; Nicholas Keller; Tanfis I Alam; Marthandan Mahalingam; Venigalla B Rao; Gaurav Arya; Douglas E Smith
Journal:  Nat Commun       Date:  2014-06-17       Impact factor: 14.919

10.  Structures of type IV pilins from Thermus thermophilus demonstrate similarities with type II secretion system pseudopilins.

Authors:  Vijaykumar Karuppiah; Angela Thistlethwaite; Jeremy P Derrick
Journal:  J Struct Biol       Date:  2016-09-06       Impact factor: 2.867

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