| Literature DB >> 22222906 |
Tullio Caronna1, Franca Castiglione, Antonino Famulari, Francesca Fontana, Luciana Malpezzi, Andrea Mele, Daniele Mendola, Isabella Natali Sora.
Abstract
Quantum mechanics density functional calculations provided gas-phase electron distributions and proton affinities for severalEntities:
Mesh:
Substances:
Year: 2012 PMID: 22222906 PMCID: PMC6268832 DOI: 10.3390/molecules17010463
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1A generic [5]helicene with numbering of the skeletal positions.
Proton affinity values and estimated atomic charges on N atom for neutral and protonated monoaza[5]helicenescalculated at the B3LYP/6-311G** level of the theory (data pertaining to quinoline are used as reference).
| Compound | Atomic charges on N atoms | PA (kJ/mol) |
|---|---|---|
| N1: −0.52 | 1,009.8 | |
| N1: +0.06 | ||
| N2: −0.67 | 1,003.9 | |
| N2: −0.21 | ||
| N3: −0.63 | 999.7 | |
| N3: −0.06 | ||
| N4: −0.69 | 996.1 | |
| N4: −0.28 | ||
| N5: −0.64 | 1,001.3 | |
| N5: −0.26 | ||
| N6: −0.66 | 995.2 | |
| N6: −0.21 | ||
| N7: −0.65 | 1,001.2 | |
| N7: −0.20 | ||
| Quinoline | N: −0.61 | 970.9 |
| Quinoline-H+ | N: −0.09 |
Figure 2Computed structure of 1-aza[5]helicene with C14-N1 interatomic distance.
Proton affinity values and estimated atomic charges on electronegative atoms for neutral and protonated diaza[5]helicenes calculated at the B3LYP/6-311G** level of the theory. 1,10-phenanthroline (13) was included as reference.
| Compound | Atomic charges on electronegative atoms | PA (kJ/mol) * |
|---|---|---|
| N5: −0.66 N9: −0.66 | ||
| N5: −0.33 N9: −0.66 | 991.8 | |
| N5: −0.58 N9: −0.27 | 976.3 | |
| N4: −0.69 N10: −0.64 | ||
| N4: −0.27 N10: −0.59 | 979.1 | |
| N4: −0.66 N10: −0.26 | 989.0 | |
| N5: −0.64 N10: −0.64 | ||
| N5: −0.30 N10: −0.56 | 979.3 | |
| N5: −0.56 N10: −0.30 | 979.2 | |
| N2: −0.65 N13: −0.65 | ||
| N2: −0.16 N13: −0.65 | 997.2 | |
| N2: −0.65 N13: −0.17 | 997.2 | |
| N7: −0.36 N8: −0.35 | ||
| N7: +0.15 N8: −0.49 | 1,002.1 | |
| N7: −0.49 N8: +0.15 | 1,002.4 | |
| N7: +0.81 N8: −0.65 O7: −0.50 | ||
| N7: +0.56 N8: −0.56 O7: −0.47 | 978.8 | |
| N7: +0.56 N8: −0.38 O7: −0.37 | 957.1 | |
| N7: +0.35 N8: +0.34 | ||
| O7: −0.42 O8: −0.42 | ||
| N7: +0.12 N8: +0.39 | 973.0 | |
| O7: −0.39 O8: −0.41 | ||
| N7: +0.40 N8: +0.11 | 973.1 | |
| O7: −0.41 O8: −0.38 | ||
| N1: +0.05 N9: −0.55 | 1,015.5 | |
| N1: −0.56 N9: +0.06 | 1,015.6 |
* PA values pertain to neutral fragments. Due to the presence of different protonation sites, for clarity PAs are here referred to corresponding protonated species.
Figure 3Limit structures of monomethylated diazahelicenes 8 and 10 showing delocalization of positive charge onto the ring bearing the unprotonated nitrogen atom.
Figure 4N-Methylation of diazahelicene (9).
Figure 5Projections along the b axis of (a) 12, (b) 12a and (c) 12b. For compound 12a, the oxygen atoms are found disordered over two positions with occupation factors less than unity: these atoms are displayed as circle graphs.
Relevant intermolecular distances.
| Compound | C-H---X contacts | C----X distances | C-H---X angles |
|---|---|---|---|
| C(2)-H(2)---N(8) | 3.452(3) Å | 155.3(2)° | |
| C(6)-H(6)---N(7) | 3.808(3) Å | 156.0(2)° | |
| C(2)-H(2)---O(16) | 2.871(5) Å | 137.8(2)° | |
| C(6)-H(6)---O(15) | 3.329(3) Å | 143.6(2)° | |
| C(2)-H(2)--- O(16) | 3.399(3) Å | 147.4(2)° | |
| C(3)-H(3)--- O(15) | 3.374(3) Å | 159.5(2)° | |
| C(6)-H(6)--- O(15) | 3.329(3) Å | 153.4(2)° |
Figure 6Comparison between 1H-NMR spectra of free 5 (upper, red) and its complex 14 with PtCl2(PPh3) (lower, blue) in the range 7–10 ppm. The most significant shifts are evidenced with an arrow. Signals related to PPh3 are labeled.
Figure 7Expanded section of the 1H-NMR spectrum of complex 14, focused onthe areaassignedtoproton6 of 5-aza[5]helicene molecule. A coupling constant of 4 Hz, absent in the spectrum of the free molecule, can be observed.
Figure 8Calculated (upper) and experimental (lower) ESI-MS spectra for compound 14.
Figure 9Comparison between 1H-NMR spectra of 12a (upper, red) and 15 (lower, blue).
Figure 10Comparison between calculated (upper) and experimental ESI-MS spectra for 15 (lower).