Literature DB >> 22221170

"Add to subtract": a simple method to remove complex background signals from the 1H nuclear magnetic resonance spectra of mixtures.

Tao Ye1, Cheng Zheng, Shucha Zhang, G A Nagana Gowda, Olga Vitek, Daniel Raftery.   

Abstract

Because of its highly reproducible and quantitative nature and minimal requirements for sample preparation or separation, (1)H nuclear magnetic resonance (NMR) spectroscopy is widely used for profiling small-molecule metabolites in biofluids. However (1)H NMR spectra contain many overlapped peaks. In particular, blood serum/plasma and diabetic urine samples contain high concentrations of glucose, which produce strong peaks between 3.2 ppm and 4.0 ppm. Signals from most metabolites in this region are overwhelmed by the glucose background signals and become invisible. We propose a simple "Add to Subtract" background subtraction method and show that it can reduce the glucose signals by 98% to allow retrieval of the hidden information. This procedure includes adding a small drop of concentrated glucose solution to the sample in the NMR tube, mixing, waiting for an equilibration time, and acquisition of a second spectrum. The glucose-free spectra are then generated by spectral subtraction using Bruker Topspin software. Subsequent multivariate statistical analysis can then be used to identify biomarker candidate signals for distinguishing different types of biological samples. The principle of this approach is generally applicable for all quantitative spectral data and should find utility in a variety of NMR-based mixture analyses as well as in metabolite profiling.

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Year:  2011        PMID: 22221170      PMCID: PMC3282557          DOI: 10.1021/ac202548n

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  46 in total

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Review 2.  Global strategies to integrate the proteome and metabolome.

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Review 3.  Metabolomics-based systems biology and personalized medicine: moving towards n = 1 clinical trials?

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4.  Two-dimensional DOSY experiment with Excitation Sculpting water suppression for the analysis of natural and biological media.

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Journal:  J Magn Reson       Date:  2008-09-30       Impact factor: 2.229

5.  Observation of water dangling OH bonds around dissolved nonpolar groups.

Authors:  P N Perera; K R Fega; C Lawrence; E J Sundstrom; J Tomlinson-Phillips; Dor Ben-Amotz
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6.  Metabolic phenotyping in health and disease.

Authors:  Elaine Holmes; Ian D Wilson; Jeremy K Nicholson
Journal:  Cell       Date:  2008-09-05       Impact factor: 41.582

7.  Statistical significance analysis of nuclear magnetic resonance-based metabonomics data.

Authors:  Aaron M Goodpaster; Lindsey E Romick-Rosendale; Michael A Kennedy
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8.  Metabolic oxidation regulates embryonic stem cell differentiation.

Authors:  Oscar Yanes; Julie Clark; Diana M Wong; Gary J Patti; Antonio Sánchez-Ruiz; H Paul Benton; Sunia A Trauger; Caroline Desponts; Sheng Ding; Gary Siuzdak
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9.  Improved residual water suppression: WET180.

Authors:  Huaping Mo; Daniel Raftery
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10.  Metabolomics applied to diabetes research: moving from information to knowledge.

Authors:  James R Bain; Robert D Stevens; Brett R Wenner; Olga Ilkayeva; Deborah M Muoio; Christopher B Newgard
Journal:  Diabetes       Date:  2009-11       Impact factor: 9.461

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  7 in total

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Authors:  G A Nagana Gowda; Daniel Raftery
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Journal:  J Biol Chem       Date:  2016-01-19       Impact factor: 5.157

3.  Carbohydrate Background Removal in Metabolomics Samples.

Authors:  Jiaqi Yuan; Bo Zhang; Cheng Wang; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2018-12-03       Impact factor: 6.986

Review 4.  NMR Techniques in Metabolomic Studies: A Quick Overview on Examples of Utilization.

Authors:  Joanna Kruk; Marek Doskocz; Elżbieta Jodłowska; Anna Zacharzewska; Joanna Łakomiec; Kornelia Czaja; Jacek Kujawski
Journal:  Appl Magn Reson       Date:  2016-11-02       Impact factor: 0.831

5.  Seminal plasma enables selection and monitoring of active surveillance candidates using nuclear magnetic resonance-based metabolomics: A preliminary investigation.

Authors:  Matthew J Roberts; Renee S Richards; Clement W K Chow; Marion Buck; John Yaxley; Martin F Lavin; Horst Joachim Schirra; Robert A Gardiner
Journal:  Prostate Int       Date:  2017-03-23

6.  Band-selective NMR experiments for suppression of unwanted signals in complex mixtures.

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Journal:  RSC Adv       Date:  2020-09-01       Impact factor: 3.361

Review 7.  Quantitative NMR-Based Biomedical Metabolomics: Current Status and Applications.

Authors:  Alexandra A Crook; Robert Powers
Journal:  Molecules       Date:  2020-11-04       Impact factor: 4.927

  7 in total

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