| Literature DB >> 22220592 |
Miles Congreve1, Stephen P Andrews, Andrew S Doré, Kaspar Hollenstein, Edward Hurrell, Christopher J Langmead, Jonathan S Mason, Irene W Ng, Benjamin Tehan, Andrei Zhukov, Malcolm Weir, Fiona H Marshall.
Abstract
Potent, ligand efficient, selective, and orally efficacious 1,2,4-triazine derivatives have been identified using structure based drug design approaches as antagonists of the adenosine A(2A) receptor. The X-ray crystal structures of compounds 4e and 4g bound to the GPCR illustrate that the molecules bind deeply inside the orthosteric binding cavity. In vivo pharmacokinetic and efficacy data for compound 4k are presented, demonstrating the potential of this series of compounds for the treatment of Parkinson's disease.Entities:
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Year: 2012 PMID: 22220592 PMCID: PMC3308197 DOI: 10.1021/jm201376w
Source DB: PubMed Journal: J Med Chem ISSN: 0022-2623 Impact factor: 7.446
SAR and in Vitro ADME Data for Compounds 4a to 4la
| SPR data | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | formula | A2Ap | A1p | LE[ | RLM (min) | PPB (%) | kinetic solubility (μM) | p | |||
| X=C;R1–6=H | 6.93 | 6.56 | 0.50 | 23 | ND | >100 | >5 × 107 | >1 × 100 | 9.03 × 10–6 | 5.0 | |
| X=C;R1=Cl;R2–6=H | 7.29 | 7.25 | 0.50 | 29 | 97.9 | 13 | 3.79 × 105 | 1.68 × 10–1 | 4.42 × 10–7 | 6.4 | |
| X=C;R1=R3=Cl;R2,4,5,6 =H | 8.40 | 7.36 | 0.55 | 108 | 99.0 | 38 | 5.32 × 105 | 2.43 × 10–2 | 4.57 × 10–8 | 7.3 | |
| X=C;R1=R3=Me;R2,4,5,6=H | 7.67 | 6.71 | 0.50 | 9 | 98.0 | 20 | ND | ND | ND | ND | |
| X=C;R1=Cl;R2=OH;R3,4,5,6 =H | 8.85 | 9.79 | 0.57 | 69 | 98.0 | 45 | 4.07 × 106 | 1.01 × 10–3 | 2.48 × 10–10 | 9.6 | |
| X=C;R1=R3=Me;R2=OH;R4,5,6=H | 8.39 | 7.78 | 0.52 | 75 | 93.3 | 43 | 8.57 × 106 | 1.36 × 10–3 | 1.59 × 10–10 | 9.8 | |
| X=N;R1=R3=Me;R4,5,6=H | 8.11 | 7.07 | 0.53 | 100 | 82.1 | 40 | 9.92 × 106 | 1.15 × 10–2 | 1.16 × 10–9 | 8.9 | |
| X=N;R1=R3=Me;R5=F;R4,6=H | 7.81 | 6.40 | 0.48 | 100 | 69.0 | 43 | 1.13 × 107 | 1.15 × 10–1 | 1.02 × 10–8 | 8.0 | |
| X=N;R1=R3=Me;R4,6=F;R5=H | 7.56 | 6.77 | 0.45 | 100 | ND | 45 | 9.44 × 106 | 8.84 × 10–2 | 9.37 × 10–9 | 8.0 | |
| X=N;R1=R3=Me;R4=F; R5,6=H | 7.98 | 6.96 | 0.49 | 78 | 87.0 | 48 | 1.41 × 107 | 4.27 × 10–2 | 3.03 × 10–9 | 8.5 | |
| X=N;R1=Me;R3=CF3;R4,5,6=H | 8.46 | 7.50 | 0.48 | 86 | 92.0 | 35 | 1.08 × 106 | 3.73 × 10–3 | 3.45 × 10–9 | 8.5 | |
| X=N;R1=Me;R3=CF3;R5=F;R4,6=H | 8.34 | 6.93 | 0.45 | 97 | 93.0 | 34 | 1.55 × 106 | 4.09 × 10–2 | 2.63 × 10–8 | 7.6 | |
RLM rat liver microsome half-life in mins; PPB rat plasma protein binding; SPR kinetics using A2A–StaR (see main text).
Figure 1(A,B) BPM fingerprint of 1,2,4-triazine adenosine A2A antagonists. Compounds 4g (A) and 4e (B) are illustrated bound to the orthosteric pocket of the receptor and the residues lining the pocket that interact with the ligands are labeled. The tier 1, 2, and 3 designation is described in the main text. The key hydrogen bonding to Asn2536.55 of the scaffold is highlighted by green dotted lines. (C,D) Illustration of the A2A–StaR2 ligand binding site in complex with compound 4g (C) and 4e (D). TM helices and visible extracellular regions are depicted in the rainbow format. Ligands are represented as stick models, carbon and chlorine atoms are green, oxygen atoms red, and nitrogen atoms blue. Residues involved in ligand binding are labeled and represented as gray sticks, oxygen atoms are red, and nitrogen atoms are blue. Extracellular loop 2, the key binding site residues and TM’s 1, 2, 5, and 6 are labeled for reference. Potential H-bonds between the ligand and receptor are represented as dashed blue lines. TM3 and TM4 have been omitted for clarity. (E) WaterMap calculation on the binding site of compound 4e (ligand removed for the calculation). Waters calculated are color coded to show the most “unhappy” vs bulk solvent as red (>3.5 kcal/mol), then yellow (2.2–3.5 kcal/mol), with gray intermediate (−1 to 2.2 kcal) and blue “happy” (<−1 kcal/mol). The CPK surface of the ligand 4e is shown as a red dot surface, clearly illustrating that the cluster of red and yellow “unhappy” waters deep in the binding site have been displaced. GRID maps are also shown that highlight the shape (Csp3 (C3) at 1 kcal/mol in light-gray), the lipophilic hotspots (aromatic CH probe (C1=) in yellow at −2.5 kcal/mol), and the water probe hotspots (in green wire mesh at −6.6 kcal/mol). (F) Alignment of the A2A homology model with 4e docked (cyan carbons) onto the crystal structure of A2A–4e complex (green carbons). The alignment was generated by the align algorithm in Pymol utilizing only helices where hydrogen bonds are formed with the ligand, helices 6 and 7. Helices 2, 3, and 4 are removed for clarity.
Scheme 1Synthesis of 5,6-Biaryl-1,2,4-triazine-3-amine Derivatives (4) and 4-Pyridylboronic Acid Derivatives (6)
Reagents and conditions: (a) NBS, DMF, RT; (b) 3, Pd(PPh3)4, K2CO3, 1,4-dioxane/H2O, 150 °C; (c) [Ir(COD)OMe]2, DTBPY, [B(pin)]2, hexane, 50 °C.
PK Parameters of Compound 4k in Rat
| plasma clearance | 42 mL/min/kg | 0.4 h | |
| 4.6 L/kg | 244 ng/mL | ||
| terminal | 1.2 h | terminal t1/2 | 1.1 h |
| AUCinf | 397 ng·h/mL | AUCinf | 846 ng·h/mL |
| brain:plasma (0.5 h) | 3.2 | 100% | |
| CSF:brain (0.5 h) | 0.036 | ||
Figure 2In vivo efficacy of 4k. Dose-dependent effect of 4k (0.1–1 mg/kg, po; 1 and 2 h pretreatment time) to reverse haloperidol-induced catalepsy in rats in comparison with the positive control, istradefylline (1 mg/kg, po).