Literature DB >> 22220138

(4R,4aS,4bS,7R,10aR)-4-Hy-droxy-4a,7-dimethyl-2-(propan-2-yl)-1,4,4a,4b,5,6,7,8,10,10a-deca-hydro-phenanthren-1-one.

Ignez Caracelli, Julio Zukerman-Schpector, André T Lousada Machado, Timothy J Brocksom, M Lúcia Ferreira, Edward R T Tiekink.   

Abstract

In the title compound, C(19)H(28)O(2), the A ring adopts a chair conformation, and each of the B and C rings adopts a distorted half-chair conformation with the methine C atom in the CH(2)C(H)C(=O) residue, common to both rings, lying 0.6397 (19) and 0.6328 (18) Å out of the approximate plane defined by the remaining five C atoms (r.m.s. deviations = 0.0791 and 0.0901 Å for rings B and C, respectively). Helical supra-molecular chains along the a axis mediated by hy-droxy-carbonyl O-H⋯O hydrogen bonds feature in the crystal packing.

Entities:  

Year:  2011        PMID: 22220138      PMCID: PMC3247520          DOI: 10.1107/S1600536811044540

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of some diterpene compounds, see: Guo et al. (2011 ▶); Slusarczyk et al. (2011 ▶). For the synthesis, see: Ferreira (2002 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C19H28O2 M = 288.41 Orthorhombic, a = 7.3029 (9) Å b = 13.211 (2) Å c = 17.224 (3) Å V = 1661.8 (4) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 290 K 0.12 × 0.08 × 0.07 mm

Data collection

Enraf–Nonius CAD-4 MACH 3 diffractometer 3684 measured reflections 3243 independent reflections 2253 reflections with I > 2σ(I) R int = 0.031 3 standard reflections every 30 min intensity decay: 1.1%

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.113 S = 1.04 3243 reflections 195 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.13 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: MolEN (Fair, 1990 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶), DIAMOND (Brandenburg, 2006 ▶) and MarvinSketch (Chemaxon, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044540/hg5120sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044540/hg5120Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044540/hg5120Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H28O2F(000) = 632
Mr = 288.41Dx = 1.153 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 25 reflections
a = 7.3029 (9) Åθ = 9.2–14.3°
b = 13.211 (2) ŵ = 0.07 mm1
c = 17.224 (3) ÅT = 290 K
V = 1661.8 (4) Å3Irregular, colourless
Z = 40.12 × 0.08 × 0.07 mm
Enraf–Nonius CAD-4 MACH 3 diffractometerRint = 0.031
Radiation source: fine-focus sealed tubeθmax = 26.0°, θmin = 1.9°
graphiteh = 0→8
ω/–2θ scansk = 0→16
3684 measured reflectionsl = −21→21
3243 independent reflections3 standard reflections every 30 min
2253 reflections with I > 2σ(I) intensity decay: 1.1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0653P)2 + 0.0421P] where P = (Fo2 + 2Fc2)/3
3243 reflections(Δ/σ)max < 0.001
195 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.13 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6835 (3)0.92045 (14)0.83208 (11)0.0386 (4)
H10.57210.90420.86130.046*
C20.6251 (2)0.99993 (14)0.77072 (11)0.0378 (4)
C30.5391 (2)0.95441 (16)0.69613 (12)0.0457 (5)
H30.47621.00960.66910.055*
C40.6752 (3)0.91091 (16)0.64072 (11)0.0448 (5)
H40.63110.86590.60360.054*
C50.8545 (2)0.93064 (15)0.63955 (10)0.0387 (4)
C60.9268 (2)0.99737 (15)0.70073 (11)0.0382 (4)
C70.7918 (3)1.06323 (13)0.74402 (11)0.0417 (5)
H70.74681.11440.70750.050*
C80.8794 (3)1.11916 (16)0.81222 (12)0.0498 (5)
H8A0.99851.14470.79670.060*
H8B0.80361.17660.82630.060*
C90.9011 (3)1.05182 (15)0.88050 (12)0.0471 (5)
H90.98141.07250.91930.056*
C100.8151 (3)0.96451 (16)0.89061 (11)0.0415 (4)
C110.8553 (3)0.89695 (17)0.95906 (12)0.0571 (6)
H11A0.74350.88530.98810.068*
H11B0.94240.93000.99320.068*
C120.9340 (4)0.79528 (18)0.93174 (14)0.0613 (7)
H120.94030.74990.97670.074*
C130.8019 (4)0.74886 (17)0.87258 (13)0.0626 (7)
H13A0.85390.68620.85320.075*
H13B0.68780.73240.89850.075*
C140.7615 (3)0.81779 (14)0.80467 (12)0.0462 (5)
H14A0.67390.78520.77050.055*
H14B0.87310.82920.77550.055*
C150.4816 (3)1.06970 (16)0.80839 (13)0.0520 (5)
H15A0.45611.12540.77430.078*
H15B0.52821.09500.85680.078*
H15C0.37111.03220.81760.078*
C160.9912 (3)0.88187 (16)0.58484 (11)0.0439 (5)
H161.08300.84790.61720.053*
C171.0923 (3)0.95967 (18)0.53606 (13)0.0618 (6)
H17A1.15381.00670.56960.093*
H17B1.00640.99540.50400.093*
H17C1.18060.92600.50380.093*
C180.9070 (3)0.80139 (17)0.53282 (14)0.0597 (6)
H18A0.81670.83190.49980.090*
H18B0.85010.75030.56430.090*
H18C1.00090.77110.50150.090*
C191.1271 (4)0.8076 (2)0.89947 (16)0.0762 (8)
H19A1.12460.85340.85620.114*
H19B1.17240.74300.88270.114*
H19C1.20580.83430.93920.114*
O11.09041 (18)1.00004 (12)0.71585 (9)0.0548 (4)
O20.4059 (2)0.87899 (12)0.71243 (11)0.0637 (5)
H2o0.30320.90360.70890.096*
U11U22U33U12U13U23
C10.0338 (9)0.0390 (10)0.0431 (10)0.0005 (8)0.0042 (8)0.0009 (8)
C20.0291 (9)0.0410 (10)0.0433 (10)0.0040 (8)−0.0015 (8)−0.0020 (9)
C30.0289 (9)0.0551 (12)0.0531 (11)0.0041 (8)−0.0081 (8)−0.0028 (10)
C40.0362 (10)0.0579 (13)0.0403 (10)0.0065 (9)−0.0090 (8)−0.0087 (10)
C50.0311 (10)0.0456 (10)0.0395 (10)0.0037 (8)−0.0032 (7)0.0031 (9)
C60.0313 (9)0.0415 (10)0.0419 (10)−0.0020 (8)−0.0019 (8)0.0072 (9)
C70.0419 (11)0.0357 (10)0.0476 (11)0.0007 (9)−0.0046 (8)0.0046 (9)
C80.0495 (12)0.0389 (10)0.0611 (13)−0.0058 (10)−0.0002 (10)−0.0079 (10)
C90.0450 (11)0.0497 (12)0.0465 (11)0.0010 (10)−0.0085 (9)−0.0142 (9)
C100.0393 (10)0.0458 (11)0.0393 (10)0.0087 (9)0.0003 (8)−0.0045 (9)
C110.0652 (15)0.0656 (14)0.0404 (11)0.0150 (12)0.0001 (10)0.0004 (10)
C120.0764 (16)0.0607 (14)0.0467 (12)0.0222 (13)0.0046 (11)0.0148 (11)
C130.0857 (18)0.0395 (12)0.0626 (14)0.0097 (12)0.0142 (13)0.0084 (11)
C140.0527 (11)0.0352 (10)0.0507 (11)−0.0007 (9)−0.0008 (10)−0.0012 (9)
C150.0426 (11)0.0572 (12)0.0563 (12)0.0147 (10)−0.0011 (10)−0.0066 (11)
C160.0340 (10)0.0536 (12)0.0440 (11)0.0109 (10)−0.0015 (9)−0.0001 (9)
C170.0585 (14)0.0705 (15)0.0565 (13)0.0026 (13)0.0138 (12)0.0031 (12)
C180.0542 (13)0.0635 (14)0.0615 (14)0.0150 (12)−0.0001 (12)−0.0155 (11)
C190.0692 (17)0.0917 (19)0.0677 (15)0.0340 (16)−0.0017 (13)0.0006 (15)
O10.0310 (7)0.0714 (10)0.0622 (10)−0.0043 (7)−0.0035 (7)−0.0086 (8)
O20.0282 (7)0.0769 (11)0.0861 (12)−0.0086 (8)−0.0018 (8)−0.0182 (9)
C1—C101.510 (3)C11—H11B0.9700
C1—C141.545 (3)C12—C191.524 (4)
C1—C21.550 (3)C12—C131.532 (4)
C1—H10.9800C12—H120.9800
C2—C151.539 (3)C13—C141.511 (3)
C2—C71.547 (3)C13—H13A0.9700
C2—C31.551 (3)C13—H13B0.9700
C3—O21.421 (3)C14—H14A0.9700
C3—C41.493 (3)C14—H14B0.9700
C3—H30.9800C15—H15A0.9600
C4—C51.335 (3)C15—H15B0.9600
C4—H40.9300C15—H15C0.9600
C5—C61.472 (3)C16—C171.519 (3)
C5—C161.517 (3)C16—C181.520 (3)
C6—O11.223 (2)C16—H160.9800
C6—C71.512 (3)C17—H17A0.9600
C7—C81.528 (3)C17—H17B0.9600
C7—H70.9800C17—H17C0.9600
C8—C91.483 (3)C18—H18A0.9600
C8—H8A0.9700C18—H18B0.9600
C8—H8B0.9700C18—H18C0.9600
C9—C101.325 (3)C19—H19A0.9600
C9—H90.9300C19—H19B0.9600
C10—C111.507 (3)C19—H19C0.9600
C11—C121.535 (3)O2—H2o0.8200
C11—H11A0.9700
C10—C1—C14107.93 (16)H11A—C11—H11B108.1
C10—C1—C2111.68 (15)C19—C12—C13112.5 (2)
C14—C1—C2119.21 (15)C19—C12—C11111.4 (2)
C10—C1—H1105.7C13—C12—C11108.6 (2)
C14—C1—H1105.7C19—C12—H12108.1
C2—C1—H1105.7C13—C12—H12108.1
C15—C2—C7109.71 (16)C11—C12—H12108.1
C15—C2—C1107.80 (15)C14—C13—C12113.36 (19)
C7—C2—C1110.64 (15)C14—C13—H13A108.9
C15—C2—C3107.81 (15)C12—C13—H13A108.9
C7—C2—C3106.38 (15)C14—C13—H13B108.9
C1—C2—C3114.42 (16)C12—C13—H13B108.9
O2—C3—C4108.20 (17)H13A—C13—H13B107.7
O2—C3—C2112.67 (17)C13—C14—C1111.38 (16)
C4—C3—C2114.15 (15)C13—C14—H14A109.4
O2—C3—H3107.1C1—C14—H14A109.4
C4—C3—H3107.1C13—C14—H14B109.4
C2—C3—H3107.1C1—C14—H14B109.4
C5—C4—C3125.97 (18)H14A—C14—H14B108.0
C5—C4—H4117.0C2—C15—H15A109.5
C3—C4—H4117.0C2—C15—H15B109.5
C4—C5—C6117.27 (17)H15A—C15—H15B109.5
C4—C5—C16124.90 (18)C2—C15—H15C109.5
C6—C5—C16117.57 (16)H15A—C15—H15C109.5
O1—C6—C5121.36 (18)H15B—C15—H15C109.5
O1—C6—C7121.03 (18)C5—C16—C17112.10 (17)
C5—C6—C7117.61 (15)C5—C16—C18113.38 (17)
C6—C7—C8112.58 (17)C17—C16—C18110.12 (18)
C6—C7—C2110.42 (15)C5—C16—H16107.0
C8—C7—C2111.26 (16)C17—C16—H16107.0
C6—C7—H7107.4C18—C16—H16107.0
C8—C7—H7107.4C16—C17—H17A109.5
C2—C7—H7107.4C16—C17—H17B109.5
C9—C8—C7111.36 (16)H17A—C17—H17B109.5
C9—C8—H8A109.4C16—C17—H17C109.5
C7—C8—H8A109.4H17A—C17—H17C109.5
C9—C8—H8B109.4H17B—C17—H17C109.5
C7—C8—H8B109.4C16—C18—H18A109.5
H8A—C8—H8B108.0C16—C18—H18B109.5
C10—C9—C8125.16 (18)H18A—C18—H18B109.5
C10—C9—H9117.4C16—C18—H18C109.5
C8—C9—H9117.4H18A—C18—H18C109.5
C9—C10—C11121.7 (2)H18B—C18—H18C109.5
C9—C10—C1123.35 (18)C12—C19—H19A109.5
C11—C10—C1114.70 (18)C12—C19—H19B109.5
C10—C11—C12110.57 (17)H19A—C19—H19B109.5
C10—C11—H11A109.5C12—C19—H19C109.5
C12—C11—H11A109.5H19A—C19—H19C109.5
C10—C11—H11B109.5H19B—C19—H19C109.5
C12—C11—H11B109.5C3—O2—H2o109.5
C10—C1—C2—C15−77.5 (2)C3—C2—C7—C6−58.80 (19)
C14—C1—C2—C15155.54 (17)C15—C2—C7—C859.1 (2)
C10—C1—C2—C742.5 (2)C1—C2—C7—C8−59.7 (2)
C14—C1—C2—C7−84.5 (2)C3—C2—C7—C8175.44 (16)
C10—C1—C2—C3162.63 (15)C6—C7—C8—C9−79.0 (2)
C14—C1—C2—C335.6 (2)C2—C7—C8—C945.5 (2)
C15—C2—C3—O2−73.6 (2)C7—C8—C9—C10−17.0 (3)
C7—C2—C3—O2168.73 (15)C8—C9—C10—C11175.48 (19)
C1—C2—C3—O246.3 (2)C8—C9—C10—C11.1 (3)
C15—C2—C3—C4162.42 (17)C14—C1—C10—C9118.6 (2)
C7—C2—C3—C444.8 (2)C2—C1—C10—C9−14.3 (3)
C1—C2—C3—C4−77.7 (2)C14—C1—C10—C11−56.2 (2)
O2—C3—C4—C5−144.8 (2)C2—C1—C10—C11170.94 (16)
C2—C3—C4—C5−18.5 (3)C9—C10—C11—C12−116.8 (2)
C3—C4—C5—C63.3 (3)C1—C10—C11—C1258.0 (3)
C3—C4—C5—C16177.17 (19)C10—C11—C12—C1970.1 (3)
C4—C5—C6—O1162.0 (2)C10—C11—C12—C13−54.3 (3)
C16—C5—C6—O1−12.4 (3)C19—C12—C13—C14−68.0 (3)
C4—C5—C6—C7−18.4 (3)C11—C12—C13—C1455.8 (3)
C16—C5—C6—C7167.19 (17)C12—C13—C14—C1−56.9 (3)
O1—C6—C7—C8−7.3 (3)C10—C1—C14—C1354.0 (2)
C5—C6—C7—C8173.06 (16)C2—C1—C14—C13−177.28 (19)
O1—C6—C7—C2−132.3 (2)C4—C5—C16—C17121.9 (2)
C5—C6—C7—C248.0 (2)C6—C5—C16—C17−64.2 (2)
C15—C2—C7—C6−175.15 (16)C4—C5—C16—C18−3.5 (3)
C1—C2—C7—C666.04 (19)C6—C5—C16—C18170.39 (18)
D—H···AD—HH···AD···AD—H···A
O2—H2o···O1i0.822.012.805 (2)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2o⋯O1i0.822.012.805 (2)162

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  neo-Clerodane diterpenes from Ajuga ciliata Bunge and their neuroprotective activities.

Authors:  Ping Guo; Yushan Li; Jing Xu; Yuanqiang Guo; Da-Qing Jin; Jie Gao; Wenbin Hou; Tiejun Zhang
Journal:  Fitoterapia       Date:  2011-07-23       Impact factor: 2.882

3.  Antiplasmodial and antitrypanosomal activity of tanshinone-type diterpenoids from Salvia miltiorrhiza.

Authors:  Sylwester Slusarczyk; Stefanie Zimmermann; Marcel Kaiser; Adam Matkowski; Matthias Hamburger; Michael Adams
Journal:  Planta Med       Date:  2011-03-16       Impact factor: 3.352

  3 in total

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