Literature DB >> 22220124

2,3-Diamino-pyridinium 3-carb-oxy-4-hy-droxy-benzene-sulfonate monohydrate.

Madhukar Hemamalini1, Jia Hao Goh, Hoong-Kun Fun.   

Abstract

In the title hydrated mol-ecular salt, C(5)H(8)N(3) (+)·C(7)H(5)O(6)S(-)·H(2)O, the ion pairs and water mol-ecules are connected by N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds, thereby forming a three-dimensional network. There is an intra-molecular O-H⋯O hydrogen bond in the 3-carb-oxy-4-hy-droxy-benzene-sulfonate anion, which generates an S(6) ring motif.

Entities:  

Year:  2011        PMID: 22220124      PMCID: PMC3247506          DOI: 10.1107/S160053681104445X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 5-sulfosalicylic acid and related compounds, see: Marzotto et al. (2001 ▶); Onoda et al. (2001 ▶); Baskar Raj et al. (2003 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C5H8N3 +·C7H5O6S−·H2O M = 345.33 Monoclinic, a = 7.0407 (7) Å b = 15.5775 (16) Å c = 13.6244 (12) Å β = 101.491 (2)° V = 1464.3 (2) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 100 K 0.36 × 0.31 × 0.08 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.910, T max = 0.981 6890 measured reflections 3880 independent reflections 3645 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.087 S = 1.03 3880 reflections 268 parameters 2 restraints All H-atom parameters refined Δρmax = 0.33 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶), 1770 Friedel pairs Flack parameter: −0.02 (5) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104445X/hb6457sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104445X/hb6457Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681104445X/hb6457Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H8N3+·C7H5O6S·H2OF(000) = 720
Mr = 345.33Dx = 1.566 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 3903 reflections
a = 7.0407 (7) Åθ = 3.0–32.4°
b = 15.5775 (16) ŵ = 0.26 mm1
c = 13.6244 (12) ÅT = 100 K
β = 101.491 (2)°Plate, brown
V = 1464.3 (2) Å30.36 × 0.31 × 0.08 mm
Z = 4
Bruker APEXII DUO CCD diffractometer3880 independent reflections
Radiation source: fine-focus sealed tube3645 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 30.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.910, Tmax = 0.981k = −20→21
6890 measured reflectionsl = −18→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033All H-atom parameters refined
wR(F2) = 0.087w = 1/[σ2(Fo2) + (0.0525P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
3880 reflectionsΔρmax = 0.33 e Å3
268 parametersΔρmin = −0.19 e Å3
2 restraintsAbsolute structure: Flack (1983), 1770 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.02 (5)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.9025 (3)0.36254 (11)−0.04106 (15)0.0419 (4)
N20.7986 (3)0.24446 (13)−0.14072 (14)0.0438 (4)
N30.7871 (3)0.14977 (13)0.03470 (16)0.0482 (4)
C10.8513 (2)0.27950 (12)−0.04911 (15)0.0328 (3)
C20.8521 (2)0.23206 (13)0.04046 (14)0.0349 (4)
C30.9159 (3)0.27470 (17)0.12994 (16)0.0465 (4)
C40.9699 (3)0.36114 (19)0.1331 (2)0.0551 (6)
C50.9615 (3)0.40443 (15)0.0472 (2)0.0516 (5)
S10.36330 (5)0.48126 (2)−0.18842 (3)0.02841 (9)
O10.4248 (2)0.23706 (10)0.14554 (10)0.0430 (3)
O20.2649 (2)0.55517 (9)−0.15649 (10)0.0430 (3)
O30.5610 (2)0.50245 (9)−0.19835 (11)0.0408 (3)
O40.2514 (2)0.44146 (9)−0.27754 (10)0.0402 (3)
O50.2302 (2)0.15275 (9)−0.14779 (11)0.0444 (3)
O60.2779 (3)0.11944 (10)0.01427 (12)0.0484 (4)
C60.4112 (2)0.28932 (11)0.06627 (12)0.0305 (3)
C70.4712 (3)0.37427 (12)0.08458 (13)0.0337 (3)
C80.4596 (2)0.43146 (11)0.00715 (13)0.0312 (3)
C90.3843 (2)0.40512 (10)−0.09102 (11)0.0253 (3)
C100.3256 (2)0.32121 (10)−0.11074 (12)0.0258 (3)
C110.3407 (2)0.26183 (10)−0.03244 (12)0.0264 (3)
C120.2809 (2)0.17180 (11)−0.05209 (13)0.0306 (3)
O1W0.3732 (3)0.08650 (11)0.25895 (15)0.0533 (4)
H30.930 (4)0.2373 (19)0.1958 (19)0.046 (7)*
H41.007 (5)0.389 (2)0.193 (3)0.069 (9)*
H51.011 (5)0.463 (2)0.039 (2)0.067 (9)*
H70.515 (4)0.3983 (18)0.149 (2)0.041 (6)*
H80.510 (4)0.4874 (19)0.021 (2)0.043 (7)*
H100.271 (3)0.3039 (15)−0.1722 (17)0.025 (5)*
H1N10.899 (5)0.393 (2)−0.098 (2)0.057 (8)*
H1N20.820 (4)0.277 (2)−0.192 (2)0.053 (8)*
H2N20.793 (4)0.1894 (19)−0.146 (2)0.042 (6)*
H1N30.763 (4)0.1187 (19)−0.021 (2)0.047 (7)*
H2N30.794 (4)0.1179 (18)0.092 (2)0.044 (6)*
H1O10.354 (4)0.181 (2)0.122 (2)0.053 (7)*
H1O50.203 (5)0.100 (2)−0.149 (2)0.057 (8)*
H1W10.265 (5)0.055 (2)0.250 (2)0.053 (8)*
H2W10.490 (8)0.071 (4)0.234 (4)0.110 (16)*
U11U22U33U12U13U23
N10.0392 (8)0.0377 (9)0.0515 (10)0.0004 (6)0.0154 (7)0.0051 (7)
N20.0607 (10)0.0399 (10)0.0340 (8)0.0010 (7)0.0169 (7)0.0017 (7)
N30.0721 (12)0.0387 (9)0.0373 (9)−0.0017 (8)0.0194 (8)0.0054 (8)
C10.0297 (7)0.0335 (8)0.0366 (8)0.0024 (6)0.0103 (6)0.0016 (7)
C20.0330 (8)0.0385 (10)0.0352 (9)0.0044 (6)0.0116 (7)0.0007 (8)
C30.0452 (10)0.0592 (13)0.0343 (10)0.0045 (9)0.0058 (8)0.0009 (9)
C40.0444 (11)0.0639 (15)0.0538 (14)−0.0043 (9)0.0017 (9)−0.0239 (12)
C50.0415 (9)0.0405 (11)0.0723 (15)−0.0054 (8)0.0105 (10)−0.0113 (10)
S10.03858 (18)0.02089 (16)0.02544 (16)−0.00344 (14)0.00561 (12)−0.00076 (14)
O10.0647 (9)0.0366 (7)0.0267 (6)−0.0019 (6)0.0068 (6)0.0070 (5)
O20.0621 (8)0.0302 (7)0.0362 (7)0.0129 (6)0.0085 (6)0.0010 (5)
O30.0469 (7)0.0314 (6)0.0462 (8)−0.0108 (5)0.0141 (6)0.0010 (5)
O40.0577 (8)0.0349 (7)0.0264 (6)−0.0101 (6)0.0043 (5)−0.0034 (5)
O50.0663 (9)0.0270 (6)0.0374 (7)−0.0146 (6)0.0043 (6)−0.0016 (5)
O60.0745 (11)0.0289 (7)0.0416 (8)−0.0115 (7)0.0114 (7)0.0064 (6)
C60.0364 (8)0.0281 (8)0.0275 (7)0.0003 (6)0.0078 (6)0.0019 (6)
C70.0417 (8)0.0323 (9)0.0256 (8)0.0013 (6)0.0031 (6)−0.0057 (6)
C80.0349 (7)0.0246 (7)0.0323 (8)−0.0024 (6)0.0027 (6)−0.0067 (6)
C90.0303 (7)0.0209 (6)0.0250 (7)−0.0012 (5)0.0060 (5)0.0000 (5)
C100.0310 (7)0.0208 (6)0.0257 (7)−0.0020 (5)0.0063 (5)−0.0019 (5)
C110.0298 (7)0.0220 (7)0.0285 (8)−0.0008 (5)0.0083 (6)0.0001 (5)
C120.0337 (7)0.0245 (7)0.0342 (8)−0.0029 (6)0.0084 (6)0.0010 (6)
O1W0.0539 (9)0.0464 (9)0.0617 (10)−0.0046 (7)0.0169 (8)−0.0035 (8)
N1—C11.342 (3)S1—C91.7640 (16)
N1—C51.358 (3)O1—C61.341 (2)
N1—H1N10.91 (3)O1—H1O11.02 (3)
N2—C11.345 (3)O5—C121.315 (2)
N2—H1N20.90 (3)O5—H1O50.84 (4)
N2—H2N20.86 (3)O6—C121.221 (2)
N3—C21.358 (3)C6—C71.396 (3)
N3—H1N30.88 (3)C6—C111.404 (2)
N3—H2N30.92 (3)C7—C81.371 (3)
C1—C21.426 (3)C7—H70.95 (3)
C2—C31.382 (3)C8—C91.398 (2)
C3—C41.397 (4)C8—H80.95 (3)
C3—H31.06 (3)C9—C101.381 (2)
C4—C51.342 (4)C10—C111.400 (2)
C4—H40.91 (4)C10—H100.89 (2)
C5—H50.99 (4)C11—C121.473 (2)
S1—O41.4484 (14)O1W—H1W10.90 (3)
S1—O21.4542 (14)O1W—H2W10.98 (5)
S1—O31.4631 (14)
C1—N1—C5124.4 (2)O4—S1—C9107.04 (8)
C1—N1—H1N1118 (2)O2—S1—C9106.31 (8)
C5—N1—H1N1117 (2)O3—S1—C9106.41 (8)
C1—N2—H1N2115.9 (19)C6—O1—H1O1108.2 (16)
C1—N2—H2N2118.6 (18)C12—O5—H1O5105 (2)
H1N2—N2—H2N2120 (3)O1—C6—C7117.46 (16)
C2—N3—H1N3124.8 (18)O1—C6—C11122.76 (16)
C2—N3—H2N3120.1 (18)C7—C6—C11119.78 (15)
H1N3—N3—H2N3113 (3)C8—C7—C6120.59 (15)
N1—C1—N2119.15 (19)C8—C7—H7114.7 (16)
N1—C1—C2118.33 (18)C6—C7—H7124.6 (16)
N2—C1—C2122.50 (18)C7—C8—C9119.90 (15)
N3—C2—C3123.45 (19)C7—C8—H8119.0 (17)
N3—C2—C1119.73 (18)C9—C8—H8121.1 (17)
C3—C2—C1116.80 (19)C10—C9—C8120.37 (15)
C2—C3—C4121.9 (2)C10—C9—S1120.87 (12)
C2—C3—H3116.2 (16)C8—C9—S1118.76 (12)
C4—C3—H3121.7 (16)C9—C10—C11120.19 (14)
C5—C4—C3119.5 (2)C9—C10—H10121.7 (15)
C5—C4—H4120 (2)C11—C10—H10118.0 (15)
C3—C4—H4120 (2)C10—C11—C6119.14 (14)
C4—C5—N1118.9 (2)C10—C11—C12120.99 (15)
C4—C5—H5127.2 (19)C6—C11—C12119.87 (14)
N1—C5—H5113.4 (19)O6—C12—O5122.81 (16)
O4—S1—O2112.20 (9)O6—C12—C11123.21 (16)
O4—S1—O3112.80 (9)O5—C12—C11113.97 (15)
O2—S1—O3111.58 (9)H1W1—O1W—H2W1124 (4)
C5—N1—C1—N2−178.76 (19)O2—S1—C9—C10129.29 (13)
C5—N1—C1—C22.2 (3)O3—S1—C9—C10−111.65 (13)
N1—C1—C2—N3175.05 (18)O4—S1—C9—C8−170.06 (13)
N2—C1—C2—N3−3.9 (3)O2—S1—C9—C8−49.97 (14)
N1—C1—C2—C3−3.3 (2)O3—S1—C9—C869.09 (14)
N2—C1—C2—C3177.74 (19)C8—C9—C10—C110.1 (2)
N3—C2—C3—C4−175.7 (2)S1—C9—C10—C11−179.10 (11)
C1—C2—C3—C42.5 (3)C9—C10—C11—C61.7 (2)
C2—C3—C4—C5−0.6 (4)C9—C10—C11—C12−179.31 (14)
C3—C4—C5—N1−0.7 (4)O1—C6—C11—C10178.04 (16)
C1—N1—C5—C4−0.2 (3)C7—C6—C11—C10−2.2 (2)
O1—C6—C7—C8−179.37 (17)O1—C6—C11—C12−1.0 (2)
C11—C6—C7—C80.8 (3)C7—C6—C11—C12178.81 (15)
C6—C7—C8—C91.0 (3)C10—C11—C12—O6−174.36 (18)
C7—C8—C9—C10−1.5 (2)C6—C11—C12—O64.6 (3)
C7—C8—C9—S1177.74 (14)C10—C11—C12—O55.4 (2)
O4—S1—C9—C109.19 (15)C6—C11—C12—O5−175.63 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O1Wi0.91 (3)1.95 (3)2.806 (3)158 (3)
N2—H1N2···O1i0.90 (3)2.48 (3)3.222 (2)140 (2)
N2—H1N2···O1Wi0.90 (3)2.28 (3)3.060 (3)145 (2)
N2—H2N2···O2ii0.86 (3)2.10 (3)2.963 (2)177 (3)
N3—H1N3···O2ii0.89 (3)2.10 (3)2.970 (3)168 (3)
N3—H2N3···O4iii0.92 (3)2.08 (3)2.980 (3)167 (3)
O1—H1O1···O61.03 (3)1.75 (3)2.625 (2)141 (2)
O5—H1O5···O3iv0.84 (3)1.87 (3)2.655 (2)155 (3)
O1W—H1W1···O3v0.89 (3)1.94 (3)2.757 (3)151 (2)
O1W—H2W1···O4iii0.98 (6)1.89 (6)2.838 (3)162 (4)
C7—H7···O3vi0.95 (3)2.56 (3)3.477 (2)163 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O1Wi0.91 (3)1.95 (3)2.806 (3)158 (3)
N2—H1N2⋯O1i0.90 (3)2.48 (3)3.222 (2)140 (2)
N2—H1N2⋯O1Wi0.90 (3)2.28 (3)3.060 (3)145 (2)
N2—H2N2⋯O2ii0.86 (3)2.10 (3)2.963 (2)177 (3)
N3—H1N3⋯O2ii0.89 (3)2.10 (3)2.970 (3)168 (3)
N3—H2N3⋯O4iii0.92 (3)2.08 (3)2.980 (3)167 (3)
O1—H1O1⋯O61.03 (3)1.75 (3)2.625 (2)141 (2)
O5—H1O5⋯O3iv0.84 (3)1.87 (3)2.655 (2)155 (3)
O1W—H1W1⋯O3v0.89 (3)1.94 (3)2.757 (3)151 (2)
O1W—H2W1⋯O4iii0.98 (6)1.89 (6)2.838 (3)162 (4)
C7—H7⋯O3vi0.95 (3)2.56 (3)3.477 (2)163 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Dinuclear calcium complex with weakly NH...O hydrogen-bonded sulfonate ligands.

Authors:  A Onoda; Y Yamada; M Doi; T Okamura; N Ueyama
Journal:  Inorg Chem       Date:  2001-01-29       Impact factor: 5.165

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.