Literature DB >> 22220123

2,3-Diamino-pyridinium 2-hy-droxy-benzoate.

Madhukar Hemamalini1, Jia Hao Goh, Hoong-Kun Fun.   

Abstract

In the title mol-ecular salt, C(5)n class="Species">H(8)N(3) (+)·C(7)H(5)O(3) (-), the 2,3-diamino-pyridinium cation is essentially planar, with a maximum deviation of 0.006 (2) Å. In the crystal, adjacent cations and anions are linked by pairs of N-H⋯O hydrogen bonds, generating R(2) (2)(8) loops. These dimers are linked by further N-H⋯O hydrogen bonds and C-H⋯O inter-actions to form sheets lying parallel to (001). A typical intra-molecular O-H⋯O hydrogen bond is also observed in the salicylate (2-hy-droxy-benzoate) anion, which generates an S(6) ring. The crystal structure also features π-π stacking inter-actions between the pyridinium rings of the cations, with a centroid-centroid distance of 3.5896 (15) Å.

Entities:  

Year:  2011        PMID: 22220123      PMCID: PMC3247505          DOI: 10.1107/S1600536811044461

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of 2-amino­pyridine and its derivatives, see: Banerjee & Murugavel (2004 ▶); Bis & Zaworotko (2005 ▶); Bis et al. (2006 ▶). For n class="Chemical">hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C5H8N3n class="Chemical">C7H5O3 − M = 247.25 Orthorhombic, a = 10.484 (3) Å b = 11.260 (3) Å c = 20.033 (6) Å V = 2364.9 (12) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.54 × 0.47 × 0.10 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.947, T max = 0.990 12688 measured reflections 3388 independent reflections 1989 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.144 S = 1.03 3388 reflections 216 parameters All H-atom parameters refined Δρmax = 0.21 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044461/hb6455sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044461/hb6455Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044461/hb6455Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H8N3+·C7H5O3F(000) = 1040
Mr = 247.25Dx = 1.389 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2044 reflections
a = 10.484 (3) Åθ = 2.8–27.3°
b = 11.260 (3) ŵ = 0.10 mm1
c = 20.033 (6) ÅT = 100 K
V = 2364.9 (12) Å3Plate, brown
Z = 80.54 × 0.47 × 0.10 mm
Bruker APEXII DUO CCD diffractometer3388 independent reflections
Radiation source: fine-focus sealed tube1989 reflections with I > 2σ(I)
graphiteRint = 0.063
φ and ω scansθmax = 30.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −14→14
Tmin = 0.947, Tmax = 0.990k = −8→15
12688 measured reflectionsl = −27→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050All H-atom parameters refined
wR(F2) = 0.144w = 1/[σ2(Fo2) + (0.0573P)2 + 0.2876P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3388 reflectionsΔρmax = 0.21 e Å3
216 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0084 (15)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.28118 (14)0.47769 (11)0.49919 (8)0.0372 (3)
N20.31269 (15)0.31738 (13)0.42951 (8)0.0399 (4)
N30.49319 (18)0.22674 (14)0.52153 (10)0.0515 (4)
C10.34064 (15)0.37422 (13)0.48633 (8)0.0329 (4)
C20.43007 (15)0.33158 (13)0.53385 (9)0.0356 (4)
C30.45227 (17)0.39879 (16)0.58971 (10)0.0427 (4)
C40.38911 (19)0.50631 (16)0.60051 (11)0.0462 (5)
C50.30414 (18)0.54408 (15)0.55483 (10)0.0441 (4)
O1−0.04088 (13)0.39481 (11)0.24975 (8)0.0517 (4)
O20.09892 (12)0.57050 (10)0.41657 (6)0.0432 (3)
O30.08969 (11)0.40353 (9)0.35839 (6)0.0392 (3)
C6−0.09061 (16)0.50000 (14)0.26928 (9)0.0377 (4)
C7−0.18426 (18)0.54995 (18)0.22901 (11)0.0494 (5)
C8−0.23979 (19)0.65666 (18)0.24675 (11)0.0502 (5)
C9−0.20179 (18)0.71566 (17)0.30334 (11)0.0475 (5)
C10−0.10732 (17)0.66749 (14)0.34298 (10)0.0418 (4)
C11−0.04980 (14)0.55892 (13)0.32692 (9)0.0331 (4)
C120.05192 (15)0.50816 (13)0.37001 (8)0.0331 (4)
H30.5167 (19)0.3712 (17)0.6237 (10)0.056 (6)*
H40.4035 (18)0.5488 (16)0.6398 (10)0.049 (5)*
H50.2538 (19)0.6171 (18)0.5580 (10)0.054 (5)*
H7−0.212 (2)0.5068 (18)0.1886 (12)0.066 (6)*
H8−0.304 (2)0.6964 (16)0.2196 (10)0.050 (5)*
H9−0.2398 (17)0.7915 (16)0.3162 (9)0.042 (5)*
H10−0.0825 (19)0.7010 (16)0.3859 (11)0.048 (5)*
H1O10.016 (2)0.3733 (17)0.2853 (11)0.059 (6)*
H1N10.224 (2)0.5073 (16)0.4672 (10)0.048 (5)*
H1N20.2509 (18)0.3436 (15)0.4020 (10)0.038 (5)*
H2N20.3459 (18)0.2443 (19)0.4211 (10)0.054 (6)*
H1N30.465 (2)0.1816 (17)0.4864 (11)0.056 (6)*
H2N30.536 (2)0.1958 (16)0.5553 (11)0.052 (6)*
U11U22U33U12U13U23
N10.0357 (8)0.0335 (7)0.0423 (9)0.0034 (6)−0.0022 (7)−0.0001 (6)
N20.0419 (8)0.0376 (7)0.0401 (9)0.0062 (7)−0.0096 (7)−0.0050 (6)
N30.0599 (11)0.0414 (8)0.0531 (11)0.0154 (8)−0.0212 (9)−0.0047 (8)
C10.0295 (8)0.0312 (7)0.0380 (9)−0.0034 (6)−0.0004 (7)0.0020 (6)
C20.0347 (8)0.0330 (7)0.0391 (10)−0.0017 (7)−0.0035 (7)0.0037 (7)
C30.0405 (10)0.0447 (9)0.0429 (11)−0.0018 (8)−0.0079 (8)0.0017 (8)
C40.0495 (11)0.0454 (9)0.0436 (11)−0.0020 (9)−0.0021 (9)−0.0086 (8)
C50.0453 (10)0.0373 (8)0.0496 (12)0.0035 (8)−0.0010 (9)−0.0071 (8)
O10.0476 (8)0.0510 (8)0.0565 (9)0.0040 (6)−0.0077 (7)−0.0173 (6)
O20.0458 (7)0.0389 (6)0.0449 (8)0.0057 (5)−0.0135 (6)−0.0061 (5)
O30.0405 (6)0.0319 (6)0.0453 (7)0.0023 (5)0.0005 (5)−0.0002 (5)
C60.0315 (8)0.0394 (8)0.0423 (10)−0.0046 (7)0.0007 (7)−0.0031 (7)
C70.0397 (10)0.0614 (12)0.0471 (12)−0.0056 (9)−0.0103 (9)−0.0050 (9)
C80.0377 (10)0.0561 (11)0.0568 (13)0.0006 (9)−0.0133 (9)0.0056 (9)
C90.0405 (10)0.0403 (9)0.0617 (13)0.0022 (8)−0.0126 (9)0.0024 (9)
C100.0380 (9)0.0362 (8)0.0513 (12)0.0001 (7)−0.0092 (8)−0.0021 (8)
C110.0276 (8)0.0321 (7)0.0395 (10)−0.0052 (6)−0.0004 (7)0.0019 (6)
C120.0304 (8)0.0324 (7)0.0366 (9)−0.0028 (6)0.0031 (7)0.0032 (7)
N1—C11.346 (2)O1—C61.352 (2)
N1—C51.364 (2)O1—H1O10.96 (2)
N1—H1N10.94 (2)O2—C121.267 (2)
N2—C11.338 (2)O3—C121.2646 (19)
N2—H1N20.90 (2)C6—C71.390 (3)
N2—H2N20.91 (2)C6—C111.399 (2)
N3—C21.376 (2)C7—C81.382 (3)
N3—H1N30.92 (2)C7—H70.99 (2)
N3—H2N30.88 (2)C8—C91.373 (3)
C1—C21.420 (2)C8—H80.97 (2)
C2—C31.371 (3)C9—C101.380 (3)
C3—C41.397 (3)C9—H90.977 (18)
C3—H31.01 (2)C10—C111.401 (2)
C4—C51.346 (3)C10—H100.97 (2)
C4—H40.93 (2)C11—C121.486 (2)
C5—H50.98 (2)
C1—N1—C5123.31 (15)N1—C5—H5114.7 (12)
C1—N1—H1N1118.2 (12)C6—O1—H1O1104.2 (12)
C5—N1—H1N1118.4 (12)O1—C6—C7117.32 (16)
C1—N2—H1N2121.4 (12)O1—C6—C11122.45 (16)
C1—N2—H2N2120.4 (13)C7—C6—C11120.22 (16)
H1N2—N2—H2N2117.3 (17)C8—C7—C6120.02 (18)
C2—N3—H1N3117.2 (13)C8—C7—H7120.9 (12)
C2—N3—H2N3116.5 (13)C6—C7—H7119.1 (12)
H1N3—N3—H2N3122.2 (18)C9—C8—C7120.72 (19)
N2—C1—N1118.37 (15)C9—C8—H8116.0 (11)
N2—C1—C2123.58 (15)C7—C8—H8123.2 (11)
N1—C1—C2118.05 (15)C8—C9—C10119.54 (18)
C3—C2—N3122.58 (16)C8—C9—H9121.5 (11)
C3—C2—C1118.21 (15)C10—C9—H9118.9 (11)
N3—C2—C1119.18 (16)C9—C10—C11121.31 (17)
C2—C3—C4121.63 (17)C9—C10—H10123.2 (11)
C2—C3—H3119.6 (11)C11—C10—H10115.2 (11)
C4—C3—H3118.7 (11)C6—C11—C10118.16 (15)
C5—C4—C3118.84 (18)C6—C11—C12121.10 (14)
C5—C4—H4121.2 (12)C10—C11—C12120.74 (15)
C3—C4—H4119.9 (12)O3—C12—O2122.00 (15)
C4—C5—N1119.95 (17)O3—C12—C11118.43 (14)
C4—C5—H5125.3 (12)O2—C12—C11119.57 (14)
C5—N1—C1—N2−178.69 (16)C6—C7—C8—C91.3 (3)
C5—N1—C1—C21.1 (2)C7—C8—C9—C10−0.2 (3)
N2—C1—C2—C3178.90 (16)C8—C9—C10—C11−0.5 (3)
N1—C1—C2—C3−0.9 (2)O1—C6—C11—C10−179.94 (16)
N2—C1—C2—N30.5 (3)C7—C6—C11—C101.0 (2)
N1—C1—C2—N3−179.27 (15)O1—C6—C11—C120.2 (2)
N3—C2—C3—C4178.57 (18)C7—C6—C11—C12−178.86 (16)
C1—C2—C3—C40.2 (3)C9—C10—C11—C60.0 (3)
C2—C3—C4—C50.2 (3)C9—C10—C11—C12179.93 (16)
C3—C4—C5—N1−0.1 (3)C6—C11—C12—O3−8.9 (2)
C1—N1—C5—C4−0.6 (3)C10—C11—C12—O3171.22 (15)
O1—C6—C7—C8179.24 (17)C6—C11—C12—O2170.49 (15)
C11—C6—C7—C8−1.7 (3)C10—C11—C12—O2−9.4 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O30.96 (2)1.69 (2)2.573 (2)151.2 (18)
N1—H1N1···O20.94 (2)1.80 (2)2.736 (2)171.1 (19)
N2—H1N2···O30.900 (19)2.019 (19)2.905 (2)167.7 (18)
N2—H2N2···O2i0.91 (2)2.04 (2)2.942 (2)169.6 (18)
N3—H1N3···O2i0.92 (2)1.99 (2)2.907 (2)174.3 (19)
N3—H2N3···O3ii0.88 (2)2.14 (2)2.994 (2)163.9 (19)
C7—H7···O3iii0.99 (2)2.56 (2)3.376 (3)139.8 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O30.96 (2)1.69 (2)2.573 (2)151.2 (18)
N1—H1N1⋯O20.94 (2)1.80 (2)2.736 (2)171.1 (19)
N2—H1N2⋯O30.900 (19)2.019 (19)2.905 (2)167.7 (18)
N2—H2N2⋯O2i0.91 (2)2.04 (2)2.942 (2)169.6 (18)
N3—H1N3⋯O2i0.92 (2)1.99 (2)2.907 (2)174.3 (19)
N3—H2N3⋯O3ii0.88 (2)2.14 (2)2.994 (2)163.9 (19)
C7—H7⋯O3iii0.99 (2)2.56 (2)3.376 (3)139.8 (17)

Symmetry codes: (i) ; (ii) ; (iii) .

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