Literature DB >> 22220120

4-(4-Methyl-piperazin-1-yl)-3-(5-phenyl-1,3,4-oxadiazol-2-yl)-7-(trifluoro-meth-yl)quinoline.

Hoong-Kun Fun, Suhana Arshad, B Garudachari, Arun M Isloor, M N Satyanarayan.   

Abstract

In the title compound, C(23)H(20)F(3)N(5)O, the piperazine ring adopts a chair conformation. The quinoline ring makes dihedral angles of 56.61 (11), 49.94 (12) and 42.58 (14)° with the piperazine ring, the 1,3,4-oxadiazole ring and the benzene ring, respectively. An intra-molecular C-H⋯O hydrogen bond generates an S(7) ring motif. In the crystal, mol-ecules are linked into infinite chains along the b axis by C-H⋯N hydrogen bonds.

Entities:  

Year:  2011        PMID: 22220120      PMCID: PMC3247502          DOI: 10.1107/S1600536811044370

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the properties and uses of quinoline deriv­atives, see: Kaur et al. (2010 ▶); Eswaran et al. (2010 ▶); Chou et al. (2010 ▶); Chen et al. (2004 ▶); Shingalapur et al. (2009 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C23H20F3N5O M = 439.44 Triclinic, a = 8.5065 (15) Å b = 10.2176 (17) Å c = 13.709 (3) Å α = 103.840 (5)° β = 98.515 (5)° γ = 109.034 (4)° V = 1060.0 (4) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.44 × 0.20 × 0.13 mm

Data collection

Bruker SMART APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.954, T max = 0.987 13724 measured reflections 4831 independent reflections 2890 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.231 S = 1.04 4831 reflections 290 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044370/hb6464sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044370/hb6464Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044370/hb6464Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H20F3N5OZ = 2
Mr = 439.44F(000) = 456
Triclinic, P1Dx = 1.377 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5065 (15) ÅCell parameters from 4219 reflections
b = 10.2176 (17) Åθ = 2.3–26.9°
c = 13.709 (3) ŵ = 0.11 mm1
α = 103.840 (5)°T = 296 K
β = 98.515 (5)°Block, colourless
γ = 109.034 (4)°0.44 × 0.20 × 0.13 mm
V = 1060.0 (4) Å3
Bruker SMART APEXII DUO CCD diffractometer4831 independent reflections
Radiation source: fine-focus sealed tube2890 reflections with I > 2σ(I)
graphiteRint = 0.040
φ and ω scansθmax = 27.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.954, Tmax = 0.987k = −13→12
13724 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.231H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.1328P)2 + 0.121P] where P = (Fo2 + 2Fc2)/3
4831 reflections(Δ/σ)max < 0.001
290 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.5226 (3)−0.6774 (2)−0.27438 (12)0.0963 (6)
F20.5484 (3)−0.7593 (2)−0.14756 (14)0.1015 (6)
F30.7645 (3)−0.6755 (2)−0.20656 (17)0.1229 (9)
O10.7623 (2)0.17853 (16)0.22070 (11)0.0530 (4)
N10.6121 (3)−0.1679 (2)−0.10374 (15)0.0627 (6)
N20.9415 (2)−0.0424 (2)0.19566 (13)0.0506 (5)
N31.1662 (3)0.0381 (2)0.39233 (14)0.0602 (5)
N40.8354 (3)0.2779 (3)0.10041 (17)0.0738 (7)
N50.8316 (3)0.3860 (2)0.18536 (18)0.0745 (7)
C10.8270 (3)−0.0818 (3)0.09901 (16)0.0487 (5)
C20.7750 (3)−0.2268 (3)0.03114 (15)0.0493 (5)
C30.8327 (3)−0.3329 (3)0.05590 (17)0.0580 (6)
H3A0.9059−0.30920.12040.070*
C40.7844 (3)−0.4679 (3)−0.01160 (18)0.0606 (6)
H4A0.8240−0.53570.00660.073*
C50.6736 (3)−0.5050 (3)−0.10978 (17)0.0555 (6)
C60.6166 (3)−0.4057 (3)−0.13745 (17)0.0585 (6)
H6A0.5446−0.4314−0.20270.070*
C70.6652 (3)−0.2655 (3)−0.06883 (16)0.0534 (6)
C80.6647 (3)−0.0358 (3)−0.04098 (17)0.0611 (6)
H8A0.63180.0313−0.06520.073*
C90.7691 (3)0.0135 (3)0.06230 (16)0.0538 (6)
C100.7947 (3)0.1592 (3)0.12490 (17)0.0563 (6)
C110.7883 (3)0.3219 (3)0.25302 (18)0.0557 (6)
C120.7691 (3)0.3857 (3)0.35531 (18)0.0545 (6)
C130.7751 (4)0.5264 (3)0.3839 (2)0.0778 (8)
H13A0.78750.57940.33710.093*
C140.7628 (5)0.5883 (4)0.4819 (3)0.0946 (10)
H14A0.76750.68350.50110.113*
C150.7436 (4)0.5113 (3)0.5516 (2)0.0852 (9)
H15A0.73510.55390.61760.102*
C160.7371 (5)0.3730 (4)0.5239 (2)0.0907 (10)
H16A0.72410.32060.57100.109*
C170.7497 (5)0.3091 (3)0.4258 (2)0.0798 (8)
H17A0.74490.21390.40740.096*
C180.6293 (4)−0.6518 (3)−0.1835 (2)0.0661 (7)
C191.0295 (3)−0.1042 (3)0.35015 (17)0.0603 (6)
H19A0.9899−0.13650.40630.072*
H19B1.0730−0.17330.31370.072*
C200.8802 (3)−0.1007 (3)0.27605 (16)0.0568 (6)
H20A0.7941−0.19830.24460.068*
H20B0.8279−0.04040.31380.068*
C211.0767 (3)0.1013 (3)0.23898 (18)0.0585 (6)
H21A1.03440.16860.27880.070*
H21B1.11490.13720.18380.070*
C221.2244 (3)0.0892 (3)0.30838 (18)0.0599 (6)
H22A1.26610.02160.26820.072*
H22B1.31800.18340.33690.072*
C231.3087 (4)0.0320 (4)0.4630 (2)0.0857 (9)
H23A1.26900.00010.51840.129*
H23B1.39820.12690.49090.129*
H23C1.3524−0.03510.42580.129*
U11U22U33U12U13U23
F10.1233 (15)0.0904 (13)0.0601 (9)0.0372 (11)0.0038 (9)0.0121 (9)
F20.1358 (17)0.0692 (11)0.0916 (12)0.0266 (10)0.0267 (11)0.0283 (9)
F30.0936 (14)0.1201 (17)0.1324 (17)0.0514 (12)0.0326 (12)−0.0196 (13)
O10.0703 (10)0.0585 (10)0.0514 (8)0.0397 (8)0.0224 (7)0.0284 (7)
N10.0840 (14)0.0819 (15)0.0464 (10)0.0542 (12)0.0177 (9)0.0291 (10)
N20.0607 (11)0.0572 (11)0.0437 (9)0.0274 (9)0.0124 (8)0.0261 (8)
N30.0700 (12)0.0684 (13)0.0479 (10)0.0342 (11)0.0073 (9)0.0208 (9)
N40.1127 (19)0.0686 (14)0.0645 (13)0.0471 (13)0.0351 (12)0.0373 (11)
N50.1079 (18)0.0646 (14)0.0703 (13)0.0425 (13)0.0323 (12)0.0344 (12)
C10.0581 (12)0.0623 (13)0.0425 (10)0.0336 (10)0.0192 (9)0.0266 (10)
C20.0592 (12)0.0613 (14)0.0431 (10)0.0338 (11)0.0173 (9)0.0254 (10)
C30.0731 (15)0.0656 (15)0.0484 (11)0.0387 (12)0.0117 (10)0.0252 (11)
C40.0770 (16)0.0645 (15)0.0567 (13)0.0402 (13)0.0194 (11)0.0269 (12)
C50.0629 (13)0.0649 (15)0.0481 (11)0.0301 (11)0.0199 (10)0.0217 (11)
C60.0650 (14)0.0768 (17)0.0448 (11)0.0372 (12)0.0144 (10)0.0230 (11)
C70.0607 (13)0.0724 (16)0.0445 (11)0.0381 (12)0.0190 (9)0.0267 (11)
C80.0831 (16)0.0787 (18)0.0496 (12)0.0528 (14)0.0231 (11)0.0343 (12)
C90.0706 (14)0.0669 (15)0.0485 (11)0.0436 (12)0.0246 (10)0.0305 (11)
C100.0721 (14)0.0682 (15)0.0508 (12)0.0422 (12)0.0233 (10)0.0308 (11)
C110.0660 (13)0.0553 (14)0.0595 (13)0.0337 (11)0.0161 (10)0.0263 (11)
C120.0576 (12)0.0557 (13)0.0597 (13)0.0303 (11)0.0139 (10)0.0221 (11)
C130.104 (2)0.0628 (17)0.0746 (17)0.0387 (15)0.0225 (15)0.0236 (14)
C140.133 (3)0.0618 (18)0.083 (2)0.0410 (19)0.0281 (19)0.0046 (16)
C150.099 (2)0.074 (2)0.0714 (18)0.0261 (16)0.0282 (16)0.0061 (15)
C160.138 (3)0.080 (2)0.0680 (17)0.046 (2)0.0438 (18)0.0297 (15)
C170.123 (3)0.0650 (18)0.0700 (17)0.0477 (17)0.0387 (16)0.0282 (14)
C180.0738 (16)0.0691 (17)0.0597 (14)0.0324 (13)0.0179 (12)0.0188 (12)
C190.0815 (16)0.0666 (16)0.0456 (11)0.0380 (13)0.0145 (11)0.0265 (11)
C200.0658 (14)0.0656 (15)0.0458 (11)0.0251 (11)0.0158 (10)0.0273 (11)
C210.0611 (13)0.0645 (15)0.0606 (13)0.0285 (11)0.0154 (11)0.0313 (12)
C220.0593 (13)0.0658 (15)0.0627 (14)0.0310 (12)0.0140 (11)0.0242 (12)
C230.088 (2)0.099 (2)0.0671 (16)0.0432 (17)−0.0064 (14)0.0253 (16)
F1—C181.342 (3)C8—C91.429 (3)
F2—C181.338 (3)C8—H8A0.9300
F3—C181.316 (3)C9—C101.457 (3)
O1—C111.356 (3)C11—C121.456 (3)
O1—C101.363 (3)C12—C131.378 (4)
N1—C81.303 (3)C12—C171.379 (4)
N1—C71.374 (3)C13—C141.376 (4)
N2—C11.404 (3)C13—H13A0.9300
N2—C211.452 (3)C14—C151.372 (4)
N2—C201.457 (3)C14—H14A0.9300
N3—C191.448 (3)C15—C161.353 (5)
N3—C221.459 (3)C15—H15A0.9300
N3—C231.464 (3)C16—C171.383 (4)
N4—C101.288 (3)C16—H16A0.9300
N4—N51.413 (3)C17—H17A0.9300
N5—C111.288 (3)C19—C201.520 (3)
C1—C91.385 (3)C19—H19A0.9700
C1—C21.430 (3)C19—H19B0.9700
C2—C31.416 (3)C20—H20A0.9700
C2—C71.424 (3)C20—H20B0.9700
C3—C41.355 (3)C21—C221.518 (3)
C3—H3A0.9300C21—H21A0.9700
C4—C51.411 (3)C21—H21B0.9700
C4—H4A0.9300C22—H22A0.9700
C5—C61.363 (3)C22—H22B0.9700
C5—C181.486 (4)C23—H23A0.9600
C6—C71.401 (4)C23—H23B0.9600
C6—H6A0.9300C23—H23C0.9600
C11—O1—C10103.18 (17)C15—C14—C13120.7 (3)
C8—N1—C7117.4 (2)C15—C14—H14A119.6
C1—N2—C21120.91 (17)C13—C14—H14A119.6
C1—N2—C20119.14 (18)C16—C15—C14119.7 (3)
C21—N2—C20111.94 (17)C16—C15—H15A120.2
C19—N3—C22109.93 (18)C14—C15—H15A120.2
C19—N3—C23110.1 (2)C15—C16—C17120.4 (3)
C22—N3—C23110.4 (2)C15—C16—H16A119.8
C10—N4—N5106.5 (2)C17—C16—H16A119.8
C11—N5—N4105.9 (2)C12—C17—C16120.3 (3)
C9—C1—N2124.0 (2)C12—C17—H17A119.8
C9—C1—C2117.54 (19)C16—C17—H17A119.8
N2—C1—C2118.30 (19)F3—C18—F2106.3 (3)
C3—C2—C7117.7 (2)F3—C18—F1105.9 (2)
C3—C2—C1123.64 (19)F2—C18—F1104.3 (2)
C7—C2—C1118.6 (2)F3—C18—C5113.0 (2)
C4—C3—C2122.0 (2)F2—C18—C5112.9 (2)
C4—C3—H3A119.0F1—C18—C5113.7 (2)
C2—C3—H3A119.0N3—C19—C20111.1 (2)
C3—C4—C5119.5 (2)N3—C19—H19A109.4
C3—C4—H4A120.3C20—C19—H19A109.4
C5—C4—H4A120.3N3—C19—H19B109.4
C6—C5—C4120.6 (2)C20—C19—H19B109.4
C6—C5—C18121.3 (2)H19A—C19—H19B108.0
C4—C5—C18118.0 (2)N2—C20—C19109.67 (19)
C5—C6—C7120.8 (2)N2—C20—H20A109.7
C5—C6—H6A119.6C19—C20—H20A109.7
C7—C6—H6A119.6N2—C20—H20B109.7
N1—C7—C6117.9 (2)C19—C20—H20B109.7
N1—C7—C2122.6 (2)H20A—C20—H20B108.2
C6—C7—C2119.4 (2)N2—C21—C22108.10 (19)
N1—C8—C9124.8 (2)N2—C21—H21A110.1
N1—C8—H8A117.6C22—C21—H21A110.1
C9—C8—H8A117.6N2—C21—H21B110.1
C1—C9—C8119.0 (2)C22—C21—H21B110.1
C1—C9—C10124.4 (2)H21A—C21—H21B108.4
C8—C9—C10116.4 (2)N3—C22—C21109.5 (2)
N4—C10—O1111.9 (2)N3—C22—H22A109.8
N4—C10—C9128.8 (2)C21—C22—H22A109.8
O1—C10—C9119.1 (2)N3—C22—H22B109.8
N5—C11—O1112.5 (2)C21—C22—H22B109.8
N5—C11—C12127.8 (2)H22A—C22—H22B108.2
O1—C11—C12119.6 (2)N3—C23—H23A109.5
C13—C12—C17119.0 (2)N3—C23—H23B109.5
C13—C12—C11119.9 (2)H23A—C23—H23B109.5
C17—C12—C11121.0 (2)N3—C23—H23C109.5
C14—C13—C12119.9 (3)H23A—C23—H23C109.5
C14—C13—H13A120.1H23B—C23—H23C109.5
C12—C13—H13A120.1
C10—N4—N5—C11−0.2 (3)C8—C9—C10—N4−47.0 (4)
C21—N2—C1—C9−34.4 (3)C1—C9—C10—O1−46.5 (3)
C20—N2—C1—C9112.0 (3)C8—C9—C10—O1128.1 (2)
C21—N2—C1—C2141.4 (2)N4—N5—C11—O1−0.1 (3)
C20—N2—C1—C2−72.2 (3)N4—N5—C11—C12178.8 (2)
C9—C1—C2—C3176.0 (2)C10—O1—C11—N50.3 (3)
N2—C1—C2—C3−0.1 (3)C10—O1—C11—C12−178.7 (2)
C9—C1—C2—C7−1.1 (3)N5—C11—C12—C138.9 (4)
N2—C1—C2—C7−177.17 (18)O1—C11—C12—C13−172.3 (2)
C7—C2—C3—C4−1.0 (3)N5—C11—C12—C17−169.2 (3)
C1—C2—C3—C4−178.1 (2)O1—C11—C12—C179.6 (4)
C2—C3—C4—C50.1 (4)C17—C12—C13—C140.4 (5)
C3—C4—C5—C60.7 (4)C11—C12—C13—C14−177.8 (3)
C3—C4—C5—C18177.4 (2)C12—C13—C14—C15−0.4 (5)
C4—C5—C6—C7−0.6 (4)C13—C14—C15—C160.2 (6)
C18—C5—C6—C7−177.2 (2)C14—C15—C16—C170.0 (6)
C8—N1—C7—C6−176.9 (2)C13—C12—C17—C16−0.3 (5)
C8—N1—C7—C2−0.7 (3)C11—C12—C17—C16177.9 (3)
C5—C6—C7—N1176.1 (2)C15—C16—C17—C120.1 (6)
C5—C6—C7—C2−0.2 (4)C6—C5—C18—F3117.0 (3)
C3—C2—C7—N1−175.1 (2)C4—C5—C18—F3−59.7 (3)
C1—C2—C7—N12.2 (3)C6—C5—C18—F2−122.3 (3)
C3—C2—C7—C61.0 (3)C4—C5—C18—F261.0 (3)
C1—C2—C7—C6178.3 (2)C6—C5—C18—F1−3.8 (4)
C7—N1—C8—C9−2.0 (4)C4—C5—C18—F1179.6 (2)
N2—C1—C9—C8174.6 (2)C22—N3—C19—C20−57.9 (3)
C2—C1—C9—C8−1.3 (3)C23—N3—C19—C20−179.7 (2)
N2—C1—C9—C10−11.0 (4)C1—N2—C20—C19154.1 (2)
C2—C1—C9—C10173.1 (2)C21—N2—C20—C19−56.7 (3)
N1—C8—C9—C13.0 (4)N3—C19—C20—N255.0 (3)
N1—C8—C9—C10−171.8 (2)C1—N2—C21—C22−151.8 (2)
N5—N4—C10—O10.4 (3)C20—N2—C21—C2259.7 (2)
N5—N4—C10—C9175.7 (2)C19—N3—C22—C2160.9 (3)
C11—O1—C10—N4−0.4 (3)C23—N3—C22—C21−177.4 (2)
C11—O1—C10—C9−176.2 (2)N2—C21—C22—N3−61.0 (3)
C1—C9—C10—N4138.5 (3)
D—H···AD—HH···AD···AD—H···A
C21—H21A···O10.972.383.018 (3)123
C4—H4A···N4i0.932.563.426 (4)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C21—H21A⋯O10.972.383.018 (3)123
C4—H4A⋯N4i0.932.563.426 (4)155

Symmetry code: (i) .

  7 in total

1.  New quinoline derivatives: synthesis and investigation of antibacterial and antituberculosis properties.

Authors:  Sumesh Eswaran; Airody Vasudeva Adhikari; Imran H Chowdhury; Nishith K Pal; K D Thomas
Journal:  Eur J Med Chem       Date:  2010-04-28       Impact factor: 6.514

2.  Design, synthesis, and preclinical evaluation of new 5,6- (or 6,7-) disubstituted-2-(fluorophenyl)quinolin-4-one derivatives as potent antitumor agents.

Authors:  Li-Chen Chou; Meng-Tung Tsai; Mei-Hua Hsu; Sheng-Hung Wang; Tzong-Der Way; Chi-Hung Huang; Hui-Yi Lin; Keduo Qian; Yizhou Dong; Kuo-Hsiung Lee; Li-Jiau Huang; Sheng-Chu Kuo
Journal:  J Med Chem       Date:  2010-10-25       Impact factor: 7.446

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 4.  Quinolines and structurally related heterocycles as antimalarials.

Authors:  Kirandeep Kaur; Meenakshi Jain; Ravi P Reddy; Rahul Jain
Journal:  Eur J Med Chem       Date:  2010-04-18       Impact factor: 6.514

5.  Synthesis and anticancer evaluation of certain indolo[2,3-b]quinoline derivatives.

Authors:  Yeh-Long Chen; Hsien-Ming Hung; Chih-Ming Lu; Kuang-Chieh Li; Cherng-Chyi Tzeng
Journal:  Bioorg Med Chem       Date:  2004-12-15       Impact factor: 3.641

6.  Synthesis and evaluation of in vitro anti-microbial and anti-tubercular activity of 2-styryl benzimidazoles.

Authors:  Ramya V Shingalapur; Kallappa M Hosamani; Rangappa S Keri
Journal:  Eur J Med Chem       Date:  2009-05-28       Impact factor: 6.514

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  1 in total

1.  Ethyl 1-(2,4-dichloro-benz-yl)-4-oxo-7-trifluoro-meth-yl-1,4-dihydro-quinoline-3-carboxyl-ate.

Authors:  Hoong-Kun Fun; Chin Wei Ooi; B Garudachari; Arun M Isloor; Gurumurthy Hegde
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-18
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.