Literature DB >> 22220119

4-[(2,4-Difluoro-phen-yl)hydrazinyl-idene]-3-methyl-5-oxo-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Hoong-Kun Fun, Safra Izuani Jama Asik, Ibrahim Abdul Razak, Shobhitha Shetty, Balakrishna Kalluraya.   

Abstract

In the title compound, C(11)H(9)F(2)N(5)OS, the pyrazole ring forms a dihedral angle of 16.42 (6)° with the benzene ring. Intra-molecular N-H⋯O hydrogen bonds generate two S(6) ring motifs. In the crystal, an R(2) (2)(8) ring motif is formed by a pair of inter-molecular N-H⋯S hydrogen bonds. Inter-molecular C-H⋯F hydrogen bonds further link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2011        PMID: 22220119      PMCID: PMC3247501          DOI: 10.1107/S1600536811044576

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrazole derivatives, see: Isloor et al. (2009 ▶); Rai et al. (2008 ▶); Bradbury & Pucci (2008 ▶); Girisha et al. (2010 ▶). For a related structure, see: Fun et al. (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986) ▶.

Experimental

Crystal data

C11H9F2N5OS M = 297.29 Triclinic, a = 7.9003 (1) Å b = 8.2400 (1) Å c = 10.1378 (1) Å α = 103.409 (1)° β = 99.864 (1)° γ = 99.372 (1)° V = 618.18 (1) Å3 Z = 2 Mo Kα radiation μ = 0.29 mm−1 T = 100 K 0.41 × 0.23 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.890, T max = 0.977 15661 measured reflections 4211 independent reflections 3546 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.091 S = 1.06 4211 reflections 194 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.46 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044576/is2796sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044576/is2796Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044576/is2796Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H9F2N5OSZ = 2
Mr = 297.29F(000) = 304
Triclinic, P1Dx = 1.597 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.9003 (1) ÅCell parameters from 7383 reflections
b = 8.2400 (1) Åθ = 2.6–31.9°
c = 10.1378 (1) ŵ = 0.29 mm1
α = 103.409 (1)°T = 100 K
β = 99.864 (1)°Block, green
γ = 99.372 (1)°0.41 × 0.23 × 0.08 mm
V = 618.18 (1) Å3
Bruker SMART APEXII CCD area-detector diffractometer4211 independent reflections
Radiation source: fine-focus sealed tube3546 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 31.9°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.890, Tmax = 0.977k = −12→12
15661 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0469P)2 + 0.1483P] where P = (Fo2 + 2Fc2)/3
4211 reflections(Δ/σ)max = 0.001
194 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.21061 (4)0.24608 (3)0.56219 (3)0.01893 (8)
F1−0.53111 (10)0.91062 (10)−0.26133 (8)0.02844 (17)
F2−0.43017 (9)0.41257 (8)−0.13817 (7)0.02208 (15)
O1−0.14398 (10)0.30354 (10)0.16468 (8)0.01952 (16)
N1−0.15277 (12)0.58736 (12)0.06501 (10)0.01746 (17)
N2−0.00803 (12)0.66676 (12)0.15852 (9)0.01665 (17)
N30.08671 (12)0.38926 (11)0.36455 (9)0.01611 (17)
N40.22017 (12)0.53670 (11)0.43282 (10)0.01660 (17)
N5−0.06153 (13)0.11880 (12)0.34770 (11)0.02077 (19)
C1−0.19357 (15)0.85108 (14)0.00178 (12)0.0202 (2)
H1A−0.09490.91650.07220.024*
C2−0.29073 (16)0.93080 (15)−0.08133 (13)0.0229 (2)
H2A−0.26031.0507−0.06810.027*
C3−0.43254 (15)0.83195 (15)−0.18365 (12)0.0208 (2)
C4−0.48169 (14)0.65643 (14)−0.21030 (12)0.0190 (2)
H4A−0.57680.5907−0.28390.023*
C5−0.38454 (14)0.58275 (13)−0.12371 (11)0.01665 (19)
C6−0.24060 (14)0.67551 (13)−0.01797 (11)0.01630 (19)
C7−0.01793 (13)0.40835 (13)0.24639 (11)0.01574 (19)
C80.05592 (13)0.58088 (13)0.24210 (11)0.01541 (18)
C90.20256 (14)0.64684 (13)0.36007 (11)0.01583 (19)
C100.32130 (15)0.81794 (13)0.39924 (12)0.0200 (2)
H10A0.41100.82920.48250.030*
H10B0.25290.90640.41840.030*
H10C0.37830.83110.32270.030*
C110.07145 (14)0.24765 (13)0.41963 (11)0.01608 (19)
H1N1−0.198 (2)0.482 (2)0.0569 (18)0.036 (5)*
H1N5−0.078 (2)0.032 (2)0.3780 (19)0.036 (4)*
H2N5−0.138 (2)0.126 (2)0.2763 (18)0.030 (4)*
U11U22U33U12U13U23
S10.01932 (13)0.01622 (12)0.01939 (14)0.00185 (9)−0.00104 (10)0.00627 (10)
F10.0254 (4)0.0287 (4)0.0295 (4)0.0030 (3)−0.0064 (3)0.0154 (3)
F20.0226 (3)0.0156 (3)0.0241 (3)−0.0004 (2)0.0008 (3)0.0039 (3)
O10.0175 (4)0.0184 (4)0.0183 (4)−0.0008 (3)−0.0013 (3)0.0032 (3)
N10.0172 (4)0.0165 (4)0.0164 (4)0.0018 (3)−0.0009 (3)0.0044 (3)
N20.0170 (4)0.0175 (4)0.0143 (4)0.0034 (3)0.0018 (3)0.0032 (3)
N30.0164 (4)0.0135 (4)0.0161 (4)0.0005 (3)−0.0002 (3)0.0041 (3)
N40.0164 (4)0.0134 (4)0.0170 (4)0.0000 (3)0.0003 (3)0.0027 (3)
N50.0211 (5)0.0163 (4)0.0216 (5)−0.0015 (3)−0.0015 (4)0.0068 (4)
C10.0194 (5)0.0186 (5)0.0185 (5)0.0011 (4)−0.0028 (4)0.0038 (4)
C20.0238 (5)0.0183 (5)0.0236 (6)0.0020 (4)−0.0022 (4)0.0067 (4)
C30.0195 (5)0.0231 (5)0.0193 (5)0.0038 (4)−0.0010 (4)0.0089 (4)
C40.0159 (5)0.0220 (5)0.0164 (5)0.0005 (4)0.0002 (4)0.0046 (4)
C50.0166 (5)0.0160 (4)0.0157 (5)0.0009 (4)0.0030 (4)0.0031 (4)
C60.0165 (4)0.0176 (4)0.0146 (4)0.0036 (4)0.0023 (4)0.0046 (4)
C70.0152 (4)0.0163 (4)0.0147 (4)0.0028 (3)0.0022 (4)0.0033 (4)
C80.0156 (4)0.0146 (4)0.0146 (4)0.0018 (3)0.0018 (4)0.0030 (4)
C90.0164 (4)0.0146 (4)0.0152 (4)0.0025 (3)0.0022 (4)0.0030 (4)
C100.0219 (5)0.0148 (4)0.0197 (5)−0.0006 (4)0.0005 (4)0.0037 (4)
C110.0164 (4)0.0143 (4)0.0170 (5)0.0030 (3)0.0029 (4)0.0041 (4)
S1—C111.6633 (11)C1—C21.3893 (15)
F1—C31.3557 (12)C1—C61.3914 (15)
F2—C51.3564 (12)C1—H1A0.9500
O1—C71.2366 (13)C2—C31.3810 (16)
N1—N21.3159 (13)C2—H2A0.9500
N1—C61.4016 (13)C3—C41.3840 (16)
N1—H1N10.866 (17)C4—C51.3772 (15)
N2—C81.3122 (13)C4—H4A0.9500
N3—C71.3905 (13)C5—C61.3949 (15)
N3—C111.4026 (13)C7—C81.4597 (14)
N3—N41.4176 (12)C8—C91.4445 (14)
N4—C91.3051 (13)C9—C101.4858 (14)
N5—C111.3334 (14)C10—H10A0.9800
N5—H1N50.840 (18)C10—H10B0.9800
N5—H2N50.878 (17)C10—H10C0.9800
N2—N1—C6120.34 (9)F2—C5—C6117.21 (9)
N2—N1—H1N1120.6 (12)C4—C5—C6123.13 (10)
C6—N1—H1N1119.0 (12)C1—C6—C5118.51 (10)
C8—N2—N1116.66 (9)C1—C6—N1123.27 (10)
C7—N3—C11127.86 (9)C5—C6—N1118.20 (9)
C7—N3—N4112.25 (8)O1—C7—N3127.95 (10)
C11—N3—N4119.89 (9)O1—C7—C8128.37 (10)
C9—N4—N3106.61 (8)N3—C7—C8103.68 (9)
C11—N5—H1N5117.8 (12)N2—C8—C9126.25 (9)
C11—N5—H2N5122.4 (11)N2—C8—C7127.47 (10)
H1N5—N5—H2N5119.5 (16)C9—C8—C7105.88 (9)
C2—C1—C6120.11 (10)N4—C9—C8111.56 (9)
C2—C1—H1A119.9N4—C9—C10122.26 (10)
C6—C1—H1A119.9C8—C9—C10126.18 (9)
C3—C2—C1118.57 (10)C9—C10—H10A109.5
C3—C2—H2A120.7C9—C10—H10B109.5
C1—C2—H2A120.7H10A—C10—H10B109.5
F1—C3—C2118.52 (10)C9—C10—H10C109.5
F1—C3—C4117.86 (10)H10A—C10—H10C109.5
C2—C3—C4123.62 (10)H10B—C10—H10C109.5
C5—C4—C3116.00 (10)N5—C11—N3114.10 (9)
C5—C4—H4A122.0N5—C11—S1124.50 (8)
C3—C4—H4A122.0N3—C11—S1121.40 (8)
F2—C5—C4119.65 (10)
C6—N1—N2—C8172.87 (9)N4—N3—C7—O1179.75 (10)
C7—N3—N4—C9−0.44 (12)C11—N3—C7—C8178.66 (10)
C11—N3—N4—C9−179.57 (9)N4—N3—C7—C8−0.38 (11)
C6—C1—C2—C3−0.58 (18)N1—N2—C8—C9−173.72 (10)
C1—C2—C3—F1177.63 (10)N1—N2—C8—C7−2.03 (16)
C1—C2—C3—C4−1.39 (19)O1—C7—C8—N27.81 (18)
F1—C3—C4—C5−176.26 (10)N3—C7—C8—N2−172.05 (10)
C2—C3—C4—C52.77 (17)O1—C7—C8—C9−179.15 (10)
C3—C4—C5—F2176.48 (10)N3—C7—C8—C90.98 (11)
C3—C4—C5—C6−2.30 (16)N3—N4—C9—C81.11 (12)
C2—C1—C6—C51.00 (17)N3—N4—C9—C10−179.47 (9)
C2—C1—C6—N1−177.62 (10)N2—C8—C9—N4171.79 (10)
F2—C5—C6—C1−178.30 (10)C7—C8—C9—N4−1.35 (12)
C4—C5—C6—C10.50 (16)N2—C8—C9—C10−7.61 (17)
F2—C5—C6—N10.39 (14)C7—C8—C9—C10179.24 (10)
C4—C5—C6—N1179.20 (10)C7—N3—C11—N5−0.44 (16)
N2—N1—C6—C1−6.89 (16)N4—N3—C11—N5178.53 (9)
N2—N1—C6—C5174.49 (9)C7—N3—C11—S1179.35 (8)
C11—N3—C7—O1−1.21 (18)N4—N3—C11—S1−1.67 (13)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O10.863 (17)2.080 (17)2.7605 (13)135.2 (15)
N5—H1N5···S1i0.842 (17)2.607 (17)3.4279 (11)165.5 (15)
N5—H2N5···O10.880 (17)2.048 (17)2.7208 (13)132.5 (14)
C10—H10A···F1ii0.982.473.3016 (14)143.
C10—H10C···F1iii0.982.533.2775 (14)133.
C10—H10C···F2iv0.982.553.2145 (14)125.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O10.863 (17)2.080 (17)2.7605 (13)135.2 (15)
N5—H1N5⋯S1i0.842 (17)2.607 (17)3.4279 (11)165.5 (15)
N5—H2N5⋯O10.880 (17)2.048 (17)2.7208 (13)132.5 (14)
C10—H10A⋯F1ii0.982.473.3016 (14)143
C10—H10C⋯F1iii0.982.533.2775 (14)133
C10—H10C⋯F2iv0.982.553.2145 (14)125

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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