Literature DB >> 22220118

4-(o-Tol-yl)piperazin-1-ium chloride.

Hoong-Kun Fun, Safra Izuani Jama Asik, B Chandrakantha, Arun M Isloor, Prakash Shetty.   

Abstract

In the title mol-ecular salt, C(11)H(17)N(2) (+)·Cl(-), the piperazin-1-ium ring adopts a chair conformation with the aromatic ring in a pseudo-equatorial orientation. The dihedral angle between the benzene ring and the mean plane of the piperazin-1-ium ring is 51.22 (6)°. In the crystal, N-H⋯Cl hydrogen bonds link the mol-ecules into chains propagating in [100]. Weak C-H⋯π inter-actions also ocur.

Entities:  

Year:  2011        PMID: 22220118      PMCID: PMC3247500          DOI: 10.1107/S1600536811044394

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the medicinal applications of piperazine derivatives, see: Amir et al. (2004 ▶); Omar & AboulWafa (1986 ▶); El-Emam et al. (2004 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶). For a related structure, see: Ben Gharbia et al. (2008 ▶).

Experimental

Crystal data

C11H17N2Cl− M = 212.72 Orthorhombic, a = 8.1572 (2) Å b = 11.2821 (3) Å c = 12.4256 (3) Å V = 1143.53 (5) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 296 K 0.54 × 0.33 × 0.23 mm

Data collection

Bruker APEX DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009) ▶ T min = 0.854, T max = 0.936 8246 measured reflections 4871 independent reflections 4172 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.092 S = 0.95 4871 reflections 128 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶), 1943 Friedel pairs Flack parameter: 0.02 (4) Data collection: APEX2 (Bruker, 2009) ▶; cell refinement: SAINT (Bruker, 2009) ▶; data reduction: SAINT ▶; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044394/hb6474sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044394/hb6474Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044394/hb6474Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H17N2+·ClF(000) = 456
Mr = 212.72Dx = 1.236 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3871 reflections
a = 8.1572 (2) Åθ = 2.4–35.1°
b = 11.2821 (3) ŵ = 0.30 mm1
c = 12.4256 (3) ÅT = 296 K
V = 1143.53 (5) Å3Block, colourless
Z = 40.54 × 0.33 × 0.23 mm
Bruker APEX DUO CCD diffractometer4871 independent reflections
Radiation source: fine-focus sealed tube4172 reflections with I > 2σ(I)
graphiteRint = 0.016
φ and ω scansθmax = 35.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −7→13
Tmin = 0.854, Tmax = 0.936k = −10→18
8246 measured reflectionsl = −6→20
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.092w = 1/[σ2(Fo2) + (0.0554P)2 + 0.0493P] where P = (Fo2 + 2Fc2)/3
S = 0.95(Δ/σ)max < 0.001
4871 reflectionsΔρmax = 0.23 e Å3
128 parametersΔρmin = −0.19 e Å3
0 restraintsAbsolute structure: Flack (1983), 1943 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.02 (4)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.37470 (3)0.15197 (3)0.10255 (2)0.04298 (7)
N11.02356 (12)1.12619 (8)1.00673 (8)0.04027 (19)
H1N11.11421.14221.04070.048*
H2N10.98411.19000.97790.048*
N20.81569 (10)0.94027 (7)0.93398 (6)0.03177 (15)
C10.93463 (14)0.99338 (10)0.86053 (8)0.0381 (2)
H1A0.88391.05810.82140.046*
H1B0.97130.93470.80880.046*
C21.07872 (14)1.03893 (12)0.92397 (10)0.0461 (2)
H2A1.13370.97320.95900.055*
H2B1.15631.07650.87570.055*
C30.89107 (15)1.07704 (11)1.07575 (8)0.0427 (2)
H3A0.85021.13841.12340.051*
H3B0.93461.01341.11970.051*
C40.75240 (13)1.03055 (10)1.00711 (8)0.0380 (2)
H4A0.66790.99671.05260.046*
H4B0.70421.09490.96620.046*
C50.69593 (12)0.86761 (8)0.88251 (6)0.03052 (16)
C60.53332 (14)0.90410 (10)0.87004 (8)0.0382 (2)
H6A0.50150.97830.89510.046*
C70.41906 (15)0.83147 (12)0.82098 (9)0.0468 (3)
H7A0.31150.85710.81250.056*
C80.46538 (18)0.72070 (12)0.78461 (10)0.0507 (3)
H8A0.38950.67180.75070.061*
C90.62468 (18)0.68295 (10)0.79889 (9)0.0451 (2)
H9A0.65390.60760.77540.054*
C100.74324 (14)0.75387 (9)0.84727 (7)0.03504 (18)
C110.91432 (17)0.70764 (11)0.86458 (11)0.0482 (3)
H11A0.91170.62270.86910.072*
H11B0.95770.73960.93030.072*
H11C0.98270.73120.80540.072*
U11U22U33U12U13U23
Cl10.03237 (11)0.04279 (13)0.05376 (13)−0.00052 (10)0.00001 (10)0.00279 (11)
N10.0329 (4)0.0355 (4)0.0524 (5)−0.0008 (3)−0.0083 (3)−0.0036 (3)
N20.0313 (4)0.0318 (4)0.0322 (3)−0.0009 (3)0.0029 (3)−0.0031 (3)
C10.0336 (5)0.0428 (5)0.0377 (4)−0.0050 (4)0.0063 (4)−0.0029 (4)
C20.0295 (4)0.0507 (6)0.0580 (6)−0.0033 (4)0.0039 (4)−0.0098 (5)
C30.0469 (6)0.0424 (5)0.0388 (4)−0.0020 (5)−0.0015 (4)−0.0088 (4)
C40.0343 (4)0.0393 (5)0.0404 (4)−0.0028 (4)0.0055 (4)−0.0101 (4)
C50.0328 (4)0.0306 (4)0.0282 (3)−0.0023 (3)0.0012 (3)0.0013 (3)
C60.0340 (4)0.0396 (5)0.0410 (4)−0.0005 (4)−0.0011 (4)0.0005 (4)
C70.0363 (5)0.0571 (7)0.0470 (5)−0.0074 (5)−0.0054 (4)0.0010 (5)
C80.0522 (7)0.0509 (7)0.0489 (5)−0.0197 (6)−0.0047 (5)−0.0018 (5)
C90.0574 (7)0.0347 (5)0.0433 (5)−0.0106 (5)0.0040 (5)−0.0040 (4)
C100.0425 (5)0.0295 (4)0.0331 (4)−0.0009 (4)0.0021 (3)0.0016 (3)
C110.0518 (7)0.0381 (5)0.0548 (6)0.0117 (5)−0.0019 (5)−0.0026 (5)
N1—C31.4869 (15)C4—H4B0.9700
N1—C21.4930 (15)C5—C61.3974 (14)
N1—H1N10.8702C5—C101.4098 (13)
N1—H2N10.8662C6—C71.3827 (16)
N2—C51.4267 (12)C6—H6A0.9300
N2—C41.4593 (12)C7—C81.382 (2)
N2—C11.4606 (13)C7—H7A0.9300
C1—C21.5056 (16)C8—C91.379 (2)
C1—H1A0.9700C8—H8A0.9300
C1—H1B0.9700C9—C101.3918 (16)
C2—H2A0.9700C9—H9A0.9300
C2—H2B0.9700C10—C111.5053 (17)
C3—C41.5107 (15)C11—H11A0.9600
C3—H3A0.9700C11—H11B0.9600
C3—H3B0.9700C11—H11C0.9600
C4—H4A0.9700
C3—N1—C2111.74 (9)C3—C4—H4A109.8
C3—N1—H1N1114.6N2—C4—H4B109.8
C2—N1—H1N1102.4C3—C4—H4B109.8
C3—N1—H2N1106.2H4A—C4—H4B108.3
C2—N1—H2N1112.0C6—C5—C10119.57 (9)
H1N1—N1—H2N1110.1C6—C5—N2122.03 (9)
C5—N2—C4115.97 (8)C10—C5—N2118.35 (9)
C5—N2—C1114.24 (7)C7—C6—C5120.94 (11)
C4—N2—C1109.74 (8)C7—C6—H6A119.5
N2—C1—C2109.36 (9)C5—C6—H6A119.5
N2—C1—H1A109.8C6—C7—C8119.73 (12)
C2—C1—H1A109.8C6—C7—H7A120.1
N2—C1—H1B109.8C8—C7—H7A120.1
C2—C1—H1B109.8C9—C8—C7119.67 (11)
H1A—C1—H1B108.3C9—C8—H8A120.2
N1—C2—C1110.51 (9)C7—C8—H8A120.2
N1—C2—H2A109.5C8—C9—C10122.20 (11)
C1—C2—H2A109.5C8—C9—H9A118.9
N1—C2—H2B109.5C10—C9—H9A118.9
C1—C2—H2B109.5C9—C10—C5117.86 (11)
H2A—C2—H2B108.1C9—C10—C11120.45 (10)
N1—C3—C4110.37 (8)C5—C10—C11121.65 (10)
N1—C3—H3A109.6C10—C11—H11A109.5
C4—C3—H3A109.6C10—C11—H11B109.5
N1—C3—H3B109.6H11A—C11—H11B109.5
C4—C3—H3B109.6C10—C11—H11C109.5
H3A—C3—H3B108.1H11A—C11—H11C109.5
N2—C4—C3109.21 (9)H11B—C11—H11C109.5
N2—C4—H4A109.8
C5—N2—C1—C2−164.57 (9)C10—C5—C6—C7−1.76 (15)
C4—N2—C1—C263.23 (11)N2—C5—C6—C7−179.23 (10)
C3—N1—C2—C153.08 (13)C5—C6—C7—C80.65 (17)
N2—C1—C2—N1−57.39 (13)C6—C7—C8—C90.87 (18)
C2—N1—C3—C4−53.24 (12)C7—C8—C9—C10−1.31 (18)
C5—N2—C4—C3165.32 (8)C8—C9—C10—C50.20 (16)
C1—N2—C4—C3−63.38 (11)C8—C9—C10—C11177.96 (11)
N1—C3—C4—N257.89 (12)C6—C5—C10—C91.32 (13)
C4—N2—C5—C622.41 (12)N2—C5—C10—C9178.88 (9)
C1—N2—C5—C6−106.74 (10)C6—C5—C10—C11−176.42 (10)
C4—N2—C5—C10−155.10 (9)N2—C5—C10—C111.14 (13)
C1—N2—C5—C1075.76 (11)
Cg2 is the centroid of C5–C10 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1N1···Cl1i0.872.263.1155 (10)167
N1—H2N1···Cl1ii0.872.233.0956 (10)177
C3—H3A···Cg2iii0.972.793.5342 (11)134
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of C5–C10 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯Cl1i0.872.263.1155 (10)167
N1—H2N1⋯Cl1ii0.872.233.0956 (10)177
C3—H3ACg2iii0.972.793.5342 (11)134

Symmetry codes: (i) ; (ii) ; (iii) .

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